Wall clock time and date at job start Tue Mar 31 2020 04:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46866 * 2 1 4 4 C 1.52990 * 109.47216 * 239.99563 * 2 1 3 5 5 N 1.46906 * 109.47364 * 184.99697 * 4 2 1 6 6 C 1.46893 * 110.99828 * 293.96202 * 5 4 2 7 7 C 1.46893 * 111.00247 * 169.99786 * 5 4 2 8 8 C 1.50697 * 109.47306 * 190.00352 * 7 5 4 9 9 O 1.21295 * 119.99893 * 359.97438 * 8 7 5 10 10 N 1.34778 * 120.00381 * 180.02562 * 8 7 5 11 11 C 1.37092 * 120.00114 * 179.97438 * 10 8 7 12 12 H 1.07993 * 120.00199 * 0.02562 * 11 10 8 13 13 C 1.38958 * 119.99787 * 179.97438 * 11 10 8 14 14 N 1.31403 * 119.99929 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99674 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47110 * 90.00262 * 15 13 11 17 17 H 1.48505 * 109.46634 * 209.99879 * 15 13 11 18 18 H 1.48492 * 109.47251 * 330.00184 * 15 13 11 19 19 N 1.46501 * 109.46955 * 119.99393 * 2 1 3 20 20 C 1.34776 * 120.00353 * 274.72704 * 19 2 1 21 21 O 1.21281 * 119.99958 * 0.28017 * 20 19 2 22 22 C 1.50697 * 120.00061 * 180.27779 * 20 19 2 23 23 H 1.08999 * 115.55315 * 61.45457 * 22 20 19 24 24 C 1.53004 * 117.49807 * 207.16834 * 22 20 19 25 25 C 1.53002 * 60.00341 * 107.48811 * 24 22 20 26 26 H 1.08994 * 117.49689 * 107.48502 * 25 24 22 27 27 C 1.50702 * 117.49745 * 252.51144 * 25 24 22 28 28 N 1.34771 * 119.99701 * 152.96759 * 27 25 24 29 29 O 1.21275 * 120.00076 * 332.96918 * 27 25 24 30 30 H 1.09004 * 109.46866 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47383 * 300.00269 * 1 2 3 32 32 H 1.08992 * 109.47127 * 60.00269 * 1 2 3 33 33 H 1.08999 * 109.47349 * 305.00351 * 4 2 1 34 34 H 1.09007 * 109.47166 * 65.00000 * 4 2 1 35 35 H 1.08996 * 109.47807 * 59.99776 * 6 5 4 36 36 H 1.09001 * 109.46841 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.46812 * 299.99211 * 6 5 4 38 38 H 1.08999 * 109.47526 * 310.01035 * 7 5 4 39 39 H 1.09009 * 109.46980 * 70.00431 * 7 5 4 40 40 H 0.97006 * 119.99633 * 0.02562 * 10 8 7 41 41 H 0.97005 * 120.00312 * 180.02562 * 14 13 11 42 42 H 0.97005 * 119.99489 * 95.00013 * 19 2 1 43 43 H 1.08996 * 117.49525 * 214.97957 * 24 22 20 44 44 H 1.08999 * 117.49923 * 359.97438 * 24 22 20 45 45 H 0.97001 * 120.00609 * 0.02562 * 28 27 25 46 46 H 0.97001 * 119.99984 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5041 -0.8267 -1.1903 6 6 4.1310 0.4993 -1.2718 7 6 4.0108 -1.7145 -2.2452 8 6 5.4725 -1.9938 -2.0076 9 8 6.0368 -1.5013 -1.0535 10 7 6.1531 -2.7900 -2.8557 11 6 7.4829 -3.0437 -2.6398 12 1 7.9851 -2.6058 -1.7898 13 6 8.1844 -3.8650 -3.5140 14 7 7.5733 -4.3981 -4.5478 15 14 9.9963 -4.2112 -3.2193 16 1 10.1372 -5.4181 -2.3657 17 1 10.6738 -4.4432 -4.5203 18 1 10.6181 -3.0476 -2.5378 19 7 2.0183 -0.6905 1.1963 20 6 2.1523 -0.0168 2.3558 21 8 1.8638 1.1600 2.4103 22 6 2.6605 -0.7256 3.5847 23 1 3.6669 -1.1370 3.5078 24 6 2.2209 -0.1826 4.9460 25 6 1.6431 -1.5001 4.4251 26 1 1.9804 -2.4207 4.9012 27 6 0.2095 -1.4957 3.9605 28 7 -0.2000 -2.3805 3.0300 29 8 -0.5756 -0.6959 4.4238 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8899 33 1 1.6054 -1.7198 -1.2950 34 1 1.7517 -0.1584 -2.1369 35 1 3.7911 1.1139 -0.4383 36 1 5.2148 0.3922 -1.2265 37 1 3.8524 0.9757 -2.2118 38 1 3.4546 -2.6517 -2.2297 39 1 3.8859 -1.2339 -3.2156 40 1 5.7021 -3.1830 -3.6194 41 1 8.0628 -4.9718 -5.1579 42 1 2.2490 -1.6317 1.1527 43 1 2.9383 -0.2366 5.7648 44 1 1.5645 0.6875 4.9526 45 1 0.4279 -3.0204 2.6596 46 1 -1.1228 -2.3779 2.7312 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754325328.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:11 Heat of formation + Delta-G solvation = -111.101356 kcal Electronic energy + Delta-G solvation = -28411.587639 eV Core-core repulsion = 24335.804939 eV Total energy + Delta-G solvation = -4075.782699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.55328 -40.44925 -40.00233 -38.39510 -36.91285 -36.07138 -35.49171 -34.54915 -33.22612 -32.05417 -29.46306 -28.00567 -26.67441 -26.24875 -25.15086 -23.75582 -21.68972 -21.44265 -20.90896 -20.80039 -19.80385 -18.99317 -17.95285 -17.79792 -17.39078 -17.03742 -16.78193 -16.56360 -16.47922 -16.14486 -15.63262 -15.39911 -15.30441 -15.03854 -14.90585 -14.82388 -14.21206 -14.06409 -13.64216 -13.50834 -13.32790 -13.11354 -12.97344 -12.87593 -12.81635 -12.63527 -12.41819 -12.36645 -12.11555 -11.80189 -11.72717 -11.58306 -11.41382 -11.10939 -10.85095 -10.65789 -10.23005 -9.98340 -9.94833 -9.20053 -8.43059 -5.90536 1.39811 1.40964 1.44023 1.55680 1.62543 2.12327 2.14889 2.30766 2.46479 2.74060 2.81018 3.24840 3.46827 3.60201 3.72922 3.79104 3.88352 4.12586 4.16511 4.23389 4.35050 4.37483 4.43071 4.55779 4.56777 4.61579 4.72661 4.76980 4.78953 4.81277 4.85103 5.03784 5.10374 5.18511 5.26675 5.45131 5.58641 5.87871 5.90218 6.07788 6.20333 6.42952 6.63815 6.66097 7.18488 7.31370 7.33191 7.63258 8.19502 8.74296 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017052 B = 0.002662 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.630460 B =10516.267987 C =11126.803460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.148 3.852 3 H 0.057 0.943 4 C 0.049 3.951 5 N -0.524 5.524 6 C 0.031 3.969 7 C 0.058 3.942 8 C 0.443 3.557 9 O -0.613 6.613 10 N -0.576 5.576 11 C -0.328 4.328 12 H 0.078 0.922 13 C -0.012 4.012 14 N -0.921 5.921 15 Si 0.988 3.012 16 H -0.270 1.270 17 H -0.274 1.274 18 H -0.275 1.275 19 N -0.685 5.685 20 C 0.532 3.468 21 O -0.588 6.588 22 C -0.167 4.167 23 H 0.162 0.838 24 C -0.128 4.128 25 C -0.155 4.155 26 H 0.180 0.820 27 C 0.537 3.463 28 N -0.826 5.826 29 O -0.590 6.590 30 H 0.082 0.918 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.028 0.972 38 H 0.121 0.879 39 H 0.064 0.936 40 H 0.396 0.604 41 H 0.276 0.724 42 H 0.414 0.586 43 H 0.142 0.858 44 H 0.078 0.922 45 H 0.418 0.582 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.469 -0.904 8.881 17.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.043 3.957 3 H 0.075 0.925 4 C -0.079 4.079 5 N -0.248 5.248 6 C -0.117 4.117 7 C -0.073 4.073 8 C 0.230 3.770 9 O -0.499 6.499 10 N -0.214 5.214 11 C -0.458 4.458 12 H 0.096 0.904 13 C -0.212 4.212 14 N -0.563 5.563 15 Si 0.812 3.188 16 H -0.196 1.196 17 H -0.199 1.199 18 H -0.200 1.200 19 N -0.335 5.335 20 C 0.319 3.681 21 O -0.469 6.469 22 C -0.189 4.189 23 H 0.179 0.821 24 C -0.166 4.166 25 C -0.176 4.176 26 H 0.197 0.803 27 C 0.322 3.678 28 N -0.389 5.389 29 O -0.470 6.470 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.138 0.862 39 H 0.082 0.918 40 H 0.229 0.771 41 H 0.086 0.914 42 H 0.251 0.749 43 H 0.160 0.840 44 H 0.097 0.903 45 H 0.250 0.750 46 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -15.465 0.470 10.192 18.527 hybrid contribution 0.697 -0.411 -1.532 1.732 sum -14.767 0.059 8.660 17.119 Atomic orbital electron populations 1.22027 0.93489 1.03405 1.01857 1.20928 0.94355 0.96306 0.84150 0.92486 1.22566 0.86434 1.02734 0.96142 1.61495 1.05374 1.11234 1.46658 1.22332 1.00554 0.89551 0.99307 1.21767 0.92129 0.99477 0.93942 1.20816 0.89985 0.82124 0.84047 1.90482 1.71606 1.54994 1.32810 1.41935 1.09797 1.43900 1.25759 1.19611 0.86636 1.28408 1.11104 0.90415 1.25948 1.04066 0.96125 0.95044 1.69659 1.38784 1.33062 1.14759 0.85000 0.77414 0.78603 0.77787 1.19565 1.19896 1.19979 1.45645 1.65287 1.14413 1.08201 1.20070 0.76575 0.86404 0.85100 1.90682 1.52257 1.18136 1.85812 1.22398 1.01248 1.04394 0.90811 0.82053 1.23020 1.02271 0.95620 0.95678 1.22475 0.90008 1.00883 1.04274 0.80316 1.20014 0.89311 0.79666 0.78796 1.43605 1.16271 1.36850 1.42164 1.90746 1.56993 1.40796 1.58475 0.89951 0.94817 0.90321 0.87230 0.92053 0.92294 0.92619 0.95356 0.86159 0.91778 0.77063 0.91446 0.74939 0.84009 0.90332 0.75005 0.76096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.49 71.98 0.68 -1.82 16 2 C 0.15 3.03 2.35 44.99 0.11 3.13 16 3 H 0.06 1.55 6.23 -2.39 -0.01 1.53 16 4 C 0.05 0.89 4.52 86.30 0.39 1.28 16 5 N -0.52 -14.18 4.22 -927.08 -3.92 -18.09 16 6 C 0.03 0.97 8.96 127.69 1.14 2.11 16 7 C 0.06 1.70 5.45 85.56 0.47 2.17 16 8 C 0.44 19.28 7.47 87.66 0.66 19.94 16 9 O -0.61 -31.50 13.91 -3.08 -0.04 -31.55 16 10 N -0.58 -27.70 5.29 -306.99 -1.62 -29.33 16 11 C -0.33 -17.82 9.68 84.04 0.81 -17.01 16 12 H 0.08 4.53 7.16 -2.91 -0.02 4.51 16 13 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 14 N -0.92 -48.05 13.05 21.66 0.28 -47.77 16 15 Si 0.99 41.67 29.55 68.60 2.03 43.70 16 16 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 19 N -0.69 -13.92 4.80 -442.54 -2.12 -16.05 16 20 C 0.53 13.82 6.49 87.66 0.57 14.39 16 21 O -0.59 -21.06 16.26 -3.03 -0.05 -21.11 16 22 C -0.17 -3.14 6.18 -11.54 -0.07 -3.21 16 23 H 0.16 2.44 8.14 -2.39 -0.02 2.42 16 24 C -0.13 -2.48 9.56 30.60 0.29 -2.18 16 25 C -0.16 -2.32 6.18 -11.54 -0.07 -2.39 16 26 H 0.18 1.23 8.14 -2.39 -0.02 1.21 16 27 C 0.54 10.58 6.79 87.66 0.60 11.17 16 28 N -0.83 -8.68 8.87 -173.54 -1.54 -10.22 16 29 O -0.59 -18.11 17.43 -3.01 -0.05 -18.17 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.03 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 33 H 0.11 1.39 7.93 -2.39 -0.02 1.37 16 34 H 0.06 1.00 8.12 -2.38 -0.02 0.98 16 35 H 0.06 1.85 6.58 -2.39 -0.02 1.83 16 36 H 0.06 2.22 5.82 -2.39 -0.01 2.21 16 37 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.12 2.82 7.93 -2.39 -0.02 2.80 16 39 H 0.06 1.73 8.12 -2.38 -0.02 1.71 16 40 H 0.40 18.03 7.90 -92.70 -0.73 17.30 16 41 H 0.28 13.55 8.31 -92.70 -0.77 12.78 16 42 H 0.41 6.63 8.60 -92.70 -0.80 5.84 16 43 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.08 2.13 7.71 -2.39 -0.02 2.11 16 45 H 0.42 1.79 8.83 -92.71 -0.82 0.97 16 46 H 0.41 3.81 8.93 -92.71 -0.83 2.98 16 Total: -1.00 -81.81 388.49 -3.12 -84.93 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: -2.12 Total: 36.24 kcal Atomic # 6 Polarization: 21.37 SS G_CDS: 6.04 Total: 27.41 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -8.92 Total: -121.45 kcal Atomic # 8 Polarization: -70.68 SS G_CDS: -0.14 Total: -70.82 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -81.81 -3.12 -84.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754325328.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.173 kcal (2) G-P(sol) polarization free energy of solvation -81.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds