Wall clock time and date at job start Tue Mar 31 2020 05:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47152 * 2 1 4 4 C 1.35997 * 117.00147 * 179.97438 * 3 2 1 5 5 C 1.39689 * 125.66966 * 179.97438 * 4 3 2 6 6 C 1.37988 * 107.63846 * 179.97438 * 5 4 3 7 7 C 1.47168 * 126.43730 * 179.97438 * 6 5 4 8 8 O 1.21625 * 119.99937 * 349.04750 * 7 6 5 9 9 N 1.34777 * 119.99729 * 169.04623 * 7 6 5 10 10 C 1.46498 * 120.00335 * 1.09758 * 9 7 6 11 11 C 1.46506 * 119.99957 * 181.09560 * 9 7 6 12 12 C 1.53001 * 109.47315 * 89.99622 * 11 9 7 13 13 H 1.09001 * 109.46886 * 59.99886 * 12 11 9 14 14 O 1.42900 * 109.46950 * 300.00734 * 12 11 9 15 15 C 1.52995 * 109.47264 * 179.97438 * 12 11 9 16 16 N 1.46501 * 109.46923 * 184.99909 * 15 12 11 17 17 C 1.46494 * 120.00284 * 269.99977 * 16 15 12 18 18 C 1.36941 * 119.99513 * 90.00720 * 16 15 12 19 19 H 1.07998 * 120.00248 * 356.43195 * 18 16 15 20 20 C 1.38815 * 119.99922 * 176.43923 * 18 16 15 21 21 N 1.31613 * 119.99972 * 34.25443 * 20 18 16 22 22 Si 1.86799 * 119.99672 * 214.25886 * 20 18 16 23 23 H 1.48498 * 109.46979 * 94.99922 * 22 20 18 24 24 H 1.48499 * 109.46850 * 214.99445 * 22 20 18 25 25 H 1.48491 * 109.47230 * 334.99574 * 22 20 18 26 26 N 1.36673 * 107.12597 * 0.02562 * 6 5 4 27 27 H 0.97005 * 126.09684 * 179.97438 * 26 6 5 28 28 N 1.31218 * 125.67054 * 359.69441 * 4 3 2 29 29 H 1.08999 * 109.47285 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47708 * 300.00114 * 1 2 3 31 31 H 1.08997 * 109.47345 * 59.99746 * 1 2 3 32 32 H 1.08998 * 109.47162 * 240.00259 * 2 1 3 33 33 H 1.09004 * 109.47246 * 119.99883 * 2 1 3 34 34 H 1.08000 * 126.18500 * 359.97438 * 5 4 3 35 35 H 1.08998 * 109.47443 * 83.35885 * 10 9 7 36 36 H 1.09001 * 109.47033 * 203.36272 * 10 9 7 37 37 H 1.09006 * 109.46952 * 323.36123 * 10 9 7 38 38 H 1.08995 * 109.47436 * 210.00099 * 11 9 7 39 39 H 1.09001 * 109.46760 * 329.99956 * 11 9 7 40 40 H 0.96698 * 113.99871 * 299.99243 * 14 12 11 41 41 H 1.09001 * 109.47316 * 305.00640 * 15 12 11 42 42 H 1.09000 * 109.46528 * 65.00681 * 15 12 11 43 43 H 1.09007 * 109.46736 * 95.25390 * 17 16 15 44 44 H 1.09000 * 109.47588 * 215.25223 * 17 16 15 45 45 H 1.09001 * 109.47377 * 335.25446 * 17 16 15 46 46 H 0.96997 * 120.00247 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.0134 2.7573 0.0001 6 6 5.3701 2.5058 0.0015 7 6 6.4454 3.5106 0.0011 8 8 6.1837 4.6811 -0.2007 9 7 7.7199 3.1337 0.2244 10 6 8.0383 1.7206 0.4436 11 6 8.7872 4.1372 0.2478 12 6 8.9622 4.6624 1.6742 13 1 9.2251 3.8368 2.3356 14 8 7.7400 5.2562 2.1164 15 6 10.0771 5.7098 1.6988 16 7 10.3261 6.1255 3.0813 17 6 9.5874 7.2550 3.6510 18 6 11.2496 5.4582 3.8411 19 1 11.7524 4.5902 3.4409 20 6 11.5393 5.8973 5.1257 21 7 10.5924 6.4311 5.8678 22 14 13.2730 5.7307 5.8009 23 1 14.0135 6.9991 5.5818 24 1 13.2117 5.4382 7.2555 25 1 13.9719 4.6225 5.1021 26 7 5.5278 1.1482 0.0022 27 1 6.3723 0.6709 0.0028 28 7 4.2528 0.5690 0.0067 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3635 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5454 3.7306 -0.0011 35 1 8.1414 1.2179 -0.5180 36 1 8.9736 1.6406 0.9976 37 1 7.2367 1.2519 1.0145 38 1 9.7193 3.6841 -0.0895 39 1 8.5242 4.9627 -0.4136 40 1 7.4447 5.9995 1.5730 41 1 10.9872 5.2817 1.2785 42 1 9.7759 6.5748 1.1080 43 1 8.7206 6.8836 4.1977 44 1 10.2360 7.8078 4.3306 45 1 9.2559 7.9142 2.8486 46 1 10.7947 6.7377 6.7656 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755802080.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:16 Heat of formation + Delta-G solvation = 12.289134 kcal Electronic energy + Delta-G solvation = -28085.416862 eV Core-core repulsion = 24014.984776 eV Total energy + Delta-G solvation = -4070.432086 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74615 -39.80010 -38.44436 -37.26901 -35.69337 -34.64315 -32.42735 -31.51532 -31.01372 -30.40244 -29.44026 -27.39046 -26.14493 -25.69683 -24.07175 -22.93673 -21.71157 -21.32365 -20.57653 -20.22881 -18.16729 -17.33484 -16.95878 -16.65053 -16.41308 -16.05520 -15.88294 -15.21559 -14.81155 -14.64020 -14.47819 -14.40427 -13.85742 -13.75167 -13.65488 -13.37545 -13.27900 -12.92755 -12.90061 -12.86543 -12.41862 -11.99812 -11.84180 -11.64767 -11.25727 -11.17564 -11.09931 -10.84258 -10.76100 -10.52160 -10.29549 -10.18664 -10.05370 -9.84833 -9.78300 -9.34878 -8.92744 -8.69255 -8.18819 -6.91195 -5.85531 -2.98528 0.90706 2.18949 2.34254 2.52808 3.05024 3.14893 3.40019 3.49078 3.50142 4.13711 4.42563 4.50955 4.56143 4.64824 4.71483 4.82853 4.93482 4.99003 5.11124 5.17063 5.18664 5.24257 5.27734 5.43120 5.47497 5.52100 5.64639 5.67959 5.79135 5.89455 5.91959 6.02098 6.28662 6.49507 6.65324 6.70808 6.79091 7.00933 7.07806 7.30256 7.53146 7.69937 7.86903 7.90832 8.29818 8.36705 9.18995 9.88601 10.34330 11.23834 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021884 B = 0.002336 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.145000 B =11985.650360 C =12120.988102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.288 6.288 4 C 0.262 3.738 5 C -0.193 4.193 6 C 0.068 3.932 7 C 0.589 3.411 8 O -0.508 6.508 9 N -0.599 5.599 10 C 0.052 3.948 11 C 0.081 3.919 12 C 0.066 3.934 13 H 0.094 0.906 14 O -0.544 6.544 15 C 0.128 3.872 16 N -0.595 5.595 17 C 0.157 3.843 18 C -0.265 4.265 19 H 0.076 0.924 20 C 0.008 3.992 21 N -0.882 5.882 22 Si 0.879 3.121 23 H -0.289 1.289 24 H -0.295 1.295 25 H -0.280 1.280 26 N -0.456 5.456 27 H 0.447 0.553 28 N -0.327 5.327 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.167 0.833 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.365 0.635 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.019 0.981 44 H 0.061 0.939 45 H -0.002 1.002 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.726 -12.909 -15.607 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 O -0.193 6.193 4 C 0.059 3.941 5 C -0.224 4.224 6 C -0.062 4.062 7 C 0.375 3.625 8 O -0.381 6.381 9 N -0.332 5.332 10 C -0.092 4.092 11 C -0.042 4.042 12 C 0.002 3.998 13 H 0.112 0.888 14 O -0.348 6.348 15 C -0.001 4.001 16 N -0.317 5.317 17 C 0.012 3.988 18 C -0.393 4.393 19 H 0.093 0.907 20 C -0.191 4.191 21 N -0.526 5.526 22 Si 0.708 3.292 23 H -0.216 1.216 24 H -0.222 1.222 25 H -0.206 1.206 26 N -0.182 5.182 27 H 0.302 0.698 28 N -0.169 5.169 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.184 0.816 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.211 0.789 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.037 0.963 44 H 0.079 0.921 45 H 0.016 0.984 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.918 -13.662 -15.061 24.091 hybrid contribution 1.252 0.351 0.176 1.313 sum -11.666 -13.311 -14.885 23.127 Atomic orbital electron populations 1.21797 0.92620 1.02943 1.03605 1.22728 0.95500 0.81186 1.02228 1.86320 1.13828 1.29706 1.89433 1.20225 0.84376 0.91943 0.97548 1.21075 0.89665 0.98302 1.13358 1.21279 0.95422 0.84390 1.05100 1.16940 0.81121 0.86915 0.77553 1.90816 1.81823 1.16967 1.48490 1.47625 1.07013 1.08066 1.70507 1.22246 1.03697 0.81851 1.01361 1.22587 0.89078 0.91890 1.00659 1.23364 0.87056 0.97534 0.91860 0.88796 1.86618 1.39943 1.50955 1.57238 1.21356 0.95628 0.95091 0.88026 1.44035 1.45165 1.34489 1.07969 1.21013 0.95761 0.87956 0.94060 1.19139 1.12937 1.10784 0.96462 0.90653 1.24702 0.97637 1.00991 0.95783 1.70365 1.29696 1.44397 1.08095 0.86597 0.87139 0.77757 0.77687 1.21576 1.22165 1.20562 1.47333 1.07027 1.03728 1.60133 0.69837 1.77267 0.88620 1.20607 1.30428 0.90245 0.91393 0.91474 0.91804 0.91704 0.81554 0.91813 0.88614 0.90850 0.89492 0.89354 0.78889 0.92824 0.93792 0.96257 0.92093 0.98385 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.55 16 2 C 0.06 0.50 6.33 37.16 0.24 0.74 16 3 O -0.29 -3.38 10.22 -19.73 -0.20 -3.58 16 4 C 0.26 3.37 7.85 -17.27 -0.14 3.23 16 5 C -0.19 -2.56 10.65 -39.13 -0.42 -2.97 16 6 C 0.07 0.87 6.71 -82.18 -0.55 0.32 16 7 C 0.59 8.24 7.15 -12.63 -0.09 8.15 16 8 O -0.51 -8.43 15.35 -2.05 -0.03 -8.46 16 9 N -0.60 -7.13 2.83 -182.94 -0.52 -7.64 16 10 C 0.05 0.42 8.90 59.85 0.53 0.95 16 11 C 0.08 1.01 5.12 -4.04 -0.02 0.99 16 12 C 0.07 1.12 3.48 -26.73 -0.09 1.02 16 13 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 14 O -0.54 -10.60 11.73 -42.53 -0.50 -11.09 16 15 C 0.13 2.42 5.37 -4.04 -0.02 2.40 16 16 N -0.59 -14.67 2.90 -181.12 -0.52 -15.19 16 17 C 0.16 3.94 8.85 59.84 0.53 4.47 16 18 C -0.27 -7.17 9.65 -15.06 -0.15 -7.31 16 19 H 0.08 1.96 8.02 -52.49 -0.42 1.54 16 20 C 0.01 0.22 4.85 -17.43 -0.08 0.14 16 21 N -0.88 -25.95 10.80 55.49 0.60 -25.35 16 22 Si 0.88 21.44 29.67 -169.99 -5.04 16.39 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 N -0.46 -4.90 6.39 33.41 0.21 -4.69 16 27 H 0.45 3.45 5.01 -182.64 -0.92 2.53 16 28 N -0.33 -4.00 12.05 30.46 0.37 -3.64 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.17 2.09 8.06 -52.49 -0.42 1.67 16 35 H 0.06 0.33 7.75 -51.93 -0.40 -0.07 16 36 H 0.10 0.72 8.02 -51.93 -0.42 0.30 16 37 H 0.07 0.59 5.19 -51.93 -0.27 0.32 16 38 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 39 H 0.09 1.13 7.41 -51.93 -0.38 0.74 16 40 H 0.36 6.44 8.48 45.56 0.39 6.83 16 41 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 42 H 0.04 0.76 7.86 -51.93 -0.41 0.35 16 43 H 0.02 0.53 8.05 -51.93 -0.42 0.11 16 44 H 0.06 1.67 6.15 -51.93 -0.32 1.35 16 45 H 0.00 -0.05 7.83 -51.93 -0.41 -0.46 16 46 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -34.52 379.53 -6.70 -41.22 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.91 Total: 4.73 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 0.12 Total: 11.59 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.14 Total: -56.51 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.73 Total: -23.14 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.04 Total: 16.39 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.52 -6.70 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755802080.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.511 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds