Wall clock time and date at job start Tue Mar 31 2020 05:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47152 * 2 1 4 4 C 1.35997 * 117.00147 * 179.97438 * 3 2 1 5 5 C 1.39689 * 125.66966 * 179.97438 * 4 3 2 6 6 C 1.37988 * 107.63846 * 179.97438 * 5 4 3 7 7 C 1.47168 * 126.43730 * 179.97438 * 6 5 4 8 8 O 1.21625 * 119.99937 * 349.04750 * 7 6 5 9 9 N 1.34777 * 119.99729 * 169.04623 * 7 6 5 10 10 C 1.46498 * 120.00335 * 1.09758 * 9 7 6 11 11 C 1.46506 * 119.99957 * 181.09560 * 9 7 6 12 12 C 1.53001 * 109.47315 * 89.99622 * 11 9 7 13 13 H 1.09001 * 109.46886 * 59.99886 * 12 11 9 14 14 O 1.42900 * 109.46950 * 300.00734 * 12 11 9 15 15 C 1.52995 * 109.47264 * 179.97438 * 12 11 9 16 16 N 1.46501 * 109.46923 * 184.99909 * 15 12 11 17 17 C 1.46494 * 120.00284 * 269.99977 * 16 15 12 18 18 C 1.36941 * 119.99513 * 90.00720 * 16 15 12 19 19 H 1.07998 * 120.00248 * 356.43195 * 18 16 15 20 20 C 1.38815 * 119.99922 * 176.43923 * 18 16 15 21 21 N 1.31613 * 119.99972 * 34.25443 * 20 18 16 22 22 Si 1.86799 * 119.99672 * 214.25886 * 20 18 16 23 23 H 1.48498 * 109.46979 * 94.99922 * 22 20 18 24 24 H 1.48499 * 109.46850 * 214.99445 * 22 20 18 25 25 H 1.48491 * 109.47230 * 334.99574 * 22 20 18 26 26 N 1.36673 * 107.12597 * 0.02562 * 6 5 4 27 27 H 0.97005 * 126.09684 * 179.97438 * 26 6 5 28 28 N 1.31218 * 125.67054 * 359.69441 * 4 3 2 29 29 H 1.08999 * 109.47285 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47708 * 300.00114 * 1 2 3 31 31 H 1.08997 * 109.47345 * 59.99746 * 1 2 3 32 32 H 1.08998 * 109.47162 * 240.00259 * 2 1 3 33 33 H 1.09004 * 109.47246 * 119.99883 * 2 1 3 34 34 H 1.08000 * 126.18500 * 359.97438 * 5 4 3 35 35 H 1.08998 * 109.47443 * 83.35885 * 10 9 7 36 36 H 1.09001 * 109.47033 * 203.36272 * 10 9 7 37 37 H 1.09006 * 109.46952 * 323.36123 * 10 9 7 38 38 H 1.08995 * 109.47436 * 210.00099 * 11 9 7 39 39 H 1.09001 * 109.46760 * 329.99956 * 11 9 7 40 40 H 0.96698 * 113.99871 * 299.99243 * 14 12 11 41 41 H 1.09001 * 109.47316 * 305.00640 * 15 12 11 42 42 H 1.09000 * 109.46528 * 65.00681 * 15 12 11 43 43 H 1.09007 * 109.46736 * 95.25390 * 17 16 15 44 44 H 1.09000 * 109.47588 * 215.25223 * 17 16 15 45 45 H 1.09001 * 109.47377 * 335.25446 * 17 16 15 46 46 H 0.96997 * 120.00247 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.0134 2.7573 0.0001 6 6 5.3701 2.5058 0.0015 7 6 6.4454 3.5106 0.0011 8 8 6.1837 4.6811 -0.2007 9 7 7.7199 3.1337 0.2244 10 6 8.0383 1.7206 0.4436 11 6 8.7872 4.1372 0.2478 12 6 8.9622 4.6624 1.6742 13 1 9.2251 3.8368 2.3356 14 8 7.7400 5.2562 2.1164 15 6 10.0771 5.7098 1.6988 16 7 10.3261 6.1255 3.0813 17 6 9.5874 7.2550 3.6510 18 6 11.2496 5.4582 3.8411 19 1 11.7524 4.5902 3.4409 20 6 11.5393 5.8973 5.1257 21 7 10.5924 6.4311 5.8678 22 14 13.2730 5.7307 5.8009 23 1 14.0135 6.9991 5.5818 24 1 13.2117 5.4382 7.2555 25 1 13.9719 4.6225 5.1021 26 7 5.5278 1.1482 0.0022 27 1 6.3723 0.6709 0.0028 28 7 4.2528 0.5690 0.0067 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3635 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5454 3.7306 -0.0011 35 1 8.1414 1.2179 -0.5180 36 1 8.9736 1.6406 0.9976 37 1 7.2367 1.2519 1.0145 38 1 9.7193 3.6841 -0.0895 39 1 8.5242 4.9627 -0.4136 40 1 7.4447 5.9995 1.5730 41 1 10.9872 5.2817 1.2785 42 1 9.7759 6.5748 1.1080 43 1 8.7206 6.8836 4.1977 44 1 10.2360 7.8078 4.3306 45 1 9.2559 7.9142 2.8486 46 1 10.7947 6.7377 6.7656 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755802080.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:14 Heat of formation + Delta-G solvation = -15.252035 kcal Electronic energy + Delta-G solvation = -28086.611136 eV Core-core repulsion = 24014.984776 eV Total energy + Delta-G solvation = -4071.626361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.69851 -40.83143 -39.34679 -38.69300 -36.96022 -36.26420 -33.39012 -33.14085 -32.06877 -31.31131 -30.75715 -28.31827 -27.89627 -27.30352 -24.95501 -24.16576 -22.81785 -22.39231 -22.14756 -21.21503 -19.12673 -18.80003 -18.20119 -17.80820 -17.47460 -17.07568 -16.94390 -16.63194 -16.31889 -16.09032 -15.62901 -15.44020 -15.24287 -14.86480 -14.77168 -14.69770 -14.45800 -14.17340 -13.73080 -13.60419 -13.42659 -13.30886 -13.17679 -12.78160 -12.71283 -12.61467 -12.48942 -12.13547 -12.04944 -11.98234 -11.93003 -11.84245 -11.77952 -11.34489 -11.21126 -10.34063 -10.30326 -9.88448 -9.68478 -8.85915 -7.93501 -5.07298 -0.09306 1.32751 1.35260 1.46712 1.51439 1.58403 1.59388 2.06846 2.28162 2.53777 3.19028 3.24771 3.49187 3.60187 3.75459 3.88903 4.05001 4.09534 4.11660 4.16091 4.24007 4.38696 4.38953 4.40360 4.52774 4.54608 4.66293 4.74191 4.79098 4.86516 4.94049 5.00077 5.01584 5.22469 5.26200 5.28429 5.44904 5.62251 5.76842 5.78370 6.11230 6.16989 6.25916 6.38912 6.87010 6.97902 7.12839 7.91266 8.33688 9.16378 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021884 B = 0.002336 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.145000 B =11985.650360 C =12120.988102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.301 6.301 4 C 0.255 3.745 5 C -0.213 4.213 6 C 0.067 3.933 7 C 0.585 3.415 8 O -0.542 6.542 9 N -0.596 5.596 10 C 0.042 3.958 11 C 0.093 3.907 12 C 0.074 3.926 13 H 0.070 0.930 14 O -0.569 6.569 15 C 0.123 3.877 16 N -0.612 5.612 17 C 0.174 3.826 18 C -0.263 4.263 19 H 0.086 0.914 20 C -0.053 4.053 21 N -0.924 5.924 22 Si 0.947 3.053 23 H -0.292 1.292 24 H -0.304 1.304 25 H -0.263 1.263 26 N -0.437 5.437 27 H 0.459 0.541 28 N -0.329 5.329 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.164 0.836 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.124 0.876 39 H 0.090 0.910 40 H 0.371 0.629 41 H 0.075 0.925 42 H 0.062 0.938 43 H -0.016 1.016 44 H 0.032 0.968 45 H 0.028 0.972 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.751 -14.844 -17.560 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 O -0.206 6.206 4 C 0.052 3.948 5 C -0.244 4.244 6 C -0.065 4.065 7 C 0.371 3.629 8 O -0.418 6.418 9 N -0.328 5.328 10 C -0.100 4.100 11 C -0.030 4.030 12 C 0.012 3.988 13 H 0.088 0.912 14 O -0.374 6.374 15 C -0.005 4.005 16 N -0.335 5.335 17 C 0.028 3.972 18 C -0.393 4.393 19 H 0.104 0.896 20 C -0.249 4.249 21 N -0.571 5.571 22 Si 0.776 3.224 23 H -0.219 1.219 24 H -0.232 1.232 25 H -0.188 1.188 26 N -0.166 5.166 27 H 0.318 0.682 28 N -0.172 5.172 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.181 0.819 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.142 0.858 39 H 0.108 0.892 40 H 0.218 0.782 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.002 0.998 44 H 0.051 0.949 45 H 0.046 0.954 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.914 -15.670 -17.067 26.053 hybrid contribution 0.901 0.877 0.718 1.448 sum -11.013 -14.793 -16.349 24.645 Atomic orbital electron populations 1.21826 0.90726 1.04430 1.03484 1.22992 0.96996 0.79865 1.02411 1.86319 1.13286 1.31647 1.89300 1.20310 0.84965 0.91807 0.97727 1.21214 0.90305 0.98658 1.14239 1.21110 0.94993 0.84981 1.05381 1.17121 0.81877 0.86613 0.77289 1.90793 1.82458 1.18285 1.50224 1.47671 1.06126 1.09594 1.69368 1.22561 1.04069 0.79734 1.03673 1.22387 0.90821 0.92657 0.97157 1.23110 0.85489 0.96065 0.94177 0.91223 1.86588 1.40962 1.51518 1.58338 1.21633 0.97165 0.96450 0.85212 1.44301 1.45108 1.34325 1.09753 1.20687 0.93792 0.88445 0.94244 1.19558 1.12731 1.10596 0.96367 0.89611 1.25451 1.00597 1.02142 0.96687 1.70498 1.31328 1.47007 1.08257 0.85525 0.82601 0.77835 0.76431 1.21911 1.23174 1.18751 1.47366 1.07282 1.03002 1.58929 0.68228 1.77238 0.88997 1.20549 1.30429 0.87915 0.91711 0.91375 0.91319 0.91764 0.81865 0.88081 0.87585 0.90968 0.85835 0.89192 0.78169 0.90715 0.91952 0.99796 0.94908 0.95363 0.94371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.28 71.98 0.74 -0.86 16 2 C 0.05 0.85 6.33 71.98 0.46 1.30 16 3 O -0.30 -6.97 10.22 -93.51 -0.96 -7.93 16 4 C 0.25 6.45 7.85 85.14 0.67 7.12 16 5 C -0.21 -5.66 10.65 22.56 0.24 -5.42 16 6 C 0.07 1.65 6.71 40.68 0.27 1.92 16 7 C 0.59 15.72 7.15 86.59 0.62 16.34 16 8 O -0.54 -17.84 15.35 2.87 0.04 -17.79 16 9 N -0.60 -12.76 2.83 -850.95 -2.41 -15.16 16 10 C 0.04 0.54 8.90 127.77 1.14 1.67 16 11 C 0.09 2.06 5.12 86.38 0.44 2.50 16 12 C 0.07 2.42 3.48 30.59 0.11 2.52 16 13 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 14 O -0.57 -22.08 11.73 -142.00 -1.67 -23.75 16 15 C 0.12 4.35 5.37 86.38 0.46 4.81 16 16 N -0.61 -29.82 2.90 -726.94 -2.11 -31.93 16 17 C 0.17 8.87 8.85 127.77 1.13 10.00 16 18 C -0.26 -14.06 9.65 84.03 0.81 -13.24 16 19 H 0.09 4.31 8.02 -2.91 -0.02 4.28 16 20 C -0.05 -3.00 4.85 84.86 0.41 -2.59 16 21 N -0.92 -55.93 10.80 21.65 0.23 -55.70 16 22 Si 0.95 44.46 29.67 68.60 2.04 46.50 16 23 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 24 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 25 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 26 N -0.44 -8.64 6.39 -48.20 -0.31 -8.95 16 27 H 0.46 5.88 5.01 -213.35 -1.07 4.81 16 28 N -0.33 -7.67 12.05 -170.77 -2.06 -9.72 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.03 8.14 -2.38 -0.02 1.02 16 34 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 35 H 0.10 0.60 7.75 -2.39 -0.02 0.58 16 36 H 0.11 1.21 8.02 -2.39 -0.02 1.19 16 37 H 0.07 0.96 5.19 -2.38 -0.01 0.95 16 38 H 0.12 1.89 8.07 -2.39 -0.02 1.87 16 39 H 0.09 2.05 7.41 -2.39 -0.02 2.03 16 40 H 0.37 13.07 8.48 -74.06 -0.63 12.45 16 41 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 42 H 0.06 2.00 7.86 -2.39 -0.02 1.98 16 43 H -0.02 -0.94 8.05 -2.38 -0.02 -0.96 16 44 H 0.03 1.84 6.15 -2.39 -0.01 1.82 16 45 H 0.03 1.22 7.83 -2.39 -0.02 1.21 16 46 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -76.40 379.53 -0.37 -76.78 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -0.69 Total: 21.59 kcal Atomic # 6 Polarization: 18.57 SS G_CDS: 7.50 Total: 26.07 kcal Atomic # 7 Polarization: -114.82 SS G_CDS: -6.64 Total: -121.46 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: -2.58 Total: -49.47 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.04 Total: 46.50 kcal Total: -76.40 -0.37 -76.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755802080.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.525 kcal (2) G-P(sol) polarization free energy of solvation -76.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds