Wall clock time and date at job start Tue Mar 31 2020 04:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47489 * 2 1 4 4 C 1.53003 * 109.47273 * 119.99953 * 2 1 3 5 5 O 1.45195 * 109.47344 * 174.99604 * 4 2 1 6 6 C 1.34639 * 117.00027 * 179.97438 * 5 4 2 7 7 O 1.21515 * 119.99701 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99877 * 180.02562 * 6 5 4 9 9 C 1.46918 * 120.63174 * 359.72604 * 8 6 5 10 10 C 1.52760 * 109.00654 * 233.58056 * 9 8 6 11 11 C 1.53045 * 109.38634 * 305.58630 * 10 9 8 12 12 C 1.50696 * 109.45096 * 181.25220 * 11 10 9 13 13 O 1.21282 * 120.00196 * 249.45087 * 12 11 10 14 14 N 1.34781 * 119.99723 * 69.45281 * 12 11 10 15 15 C 1.46499 * 120.00359 * 5.03378 * 14 12 11 16 16 C 1.46503 * 119.99785 * 185.04047 * 14 12 11 17 17 C 1.50696 * 109.47537 * 89.99478 * 16 14 12 18 18 H 1.08006 * 119.99959 * 0.02562 * 17 16 14 19 19 C 1.37873 * 120.00348 * 179.97438 * 17 16 14 20 20 N 1.31515 * 119.99993 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00212 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47192 * 90.00110 * 21 19 17 23 23 H 1.48500 * 109.46929 * 210.00203 * 21 19 17 24 24 H 1.48493 * 109.46923 * 329.99814 * 21 19 17 25 25 C 1.53044 * 109.53398 * 61.23945 * 11 10 9 26 26 C 1.46928 * 120.63107 * 179.97438 * 8 6 5 27 27 H 1.09005 * 109.46863 * 299.99958 * 1 2 3 28 28 H 1.09004 * 109.47276 * 59.99973 * 1 2 3 29 29 H 1.09003 * 109.47318 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46934 * 239.99538 * 2 1 3 31 31 H 1.09000 * 109.47691 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47340 * 300.00058 * 3 2 1 33 33 H 1.09001 * 109.47410 * 59.99829 * 3 2 1 34 34 H 1.09005 * 109.47135 * 295.00570 * 4 2 1 35 35 H 1.09009 * 109.46968 * 54.99245 * 4 2 1 36 36 H 1.09005 * 109.58901 * 353.41524 * 9 8 6 37 37 H 1.08998 * 109.59056 * 113.84280 * 9 8 6 38 38 H 1.09004 * 109.56890 * 185.55031 * 10 9 8 39 39 H 1.09003 * 109.38856 * 65.51365 * 10 9 8 40 40 H 1.09001 * 109.45604 * 301.22063 * 11 10 9 41 41 H 1.09002 * 109.46583 * 83.32984 * 15 14 12 42 42 H 1.08994 * 109.47568 * 203.32823 * 15 14 12 43 43 H 1.09006 * 109.47132 * 323.33116 * 15 14 12 44 44 H 1.09000 * 109.46939 * 210.00013 * 16 14 12 45 45 H 1.09008 * 109.47088 * 329.99295 * 16 14 12 46 46 H 0.96997 * 120.00561 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.49175 * 178.68773 * 25 11 10 48 48 H 1.08996 * 109.52302 * 58.60586 * 25 11 10 49 49 H 1.09002 * 109.58943 * 246.16275 * 26 8 6 50 50 H 1.09004 * 109.58224 * 6.43992 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 3.4870 -0.8255 1.1911 6 6 4.0977 -1.4383 2.2228 7 8 3.4393 -1.8744 3.1463 8 7 5.4392 -1.5679 2.2312 9 6 6.2481 -1.0511 1.1190 10 6 7.1390 -2.1729 0.5885 11 6 7.9568 -2.7604 1.7410 12 6 8.8587 -3.8465 1.2139 13 8 8.6464 -5.0049 1.5038 14 7 9.9012 -3.5306 0.4202 15 6 10.2239 -2.1256 0.1594 16 6 10.7116 -4.5923 -0.1817 17 6 10.1314 -4.9694 -1.5204 18 1 9.2475 -4.4681 -1.8865 19 6 10.7294 -5.9537 -2.2784 20 7 11.8059 -6.5638 -1.8329 21 14 10.0105 -6.4207 -3.9381 22 1 10.6233 -5.5794 -4.9974 23 1 10.2950 -7.8515 -4.2158 24 1 8.5418 -6.2025 -3.9204 25 6 7.0116 -3.3477 2.7918 26 6 6.1199 -2.2337 3.3501 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.7516 -0.1583 2.1370 35 1 1.6053 -1.7198 1.2952 36 1 5.5922 -0.6996 0.3225 37 1 6.8713 -0.2292 1.4714 38 1 7.8132 -1.7758 -0.1705 39 1 6.5163 -2.9527 0.1498 40 1 8.5611 -1.9748 2.1947 41 1 10.8290 -1.7340 0.9771 42 1 10.7810 -2.0480 -0.7742 43 1 9.3019 -1.5494 0.0813 44 1 11.7336 -4.2376 -0.3155 45 1 10.7123 -5.4641 0.4726 46 1 12.2264 -7.2565 -2.3659 47 1 7.5952 -3.7865 3.6011 48 1 6.3898 -4.1165 2.3332 49 1 6.7324 -1.5099 3.8880 50 1 5.3793 -2.6600 4.0268 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069739508.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:59 Heat of formation + Delta-G solvation = -127.638804 kcal Electronic energy + Delta-G solvation = -28816.882483 eV Core-core repulsion = 24843.923009 eV Total energy + Delta-G solvation = -3972.959474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.84630 -39.58565 -37.92110 -36.66456 -35.27201 -34.88773 -33.16169 -32.41050 -31.22035 -28.06429 -27.54946 -27.25469 -26.20354 -25.28487 -23.50309 -22.89044 -21.61127 -20.67162 -19.97310 -18.67084 -17.97408 -17.21290 -16.72453 -16.51424 -16.37045 -15.52709 -15.29621 -14.96202 -14.62726 -14.59192 -14.36669 -14.27712 -13.87639 -13.51123 -13.30625 -13.06979 -12.80521 -12.73798 -12.52473 -12.44951 -12.13389 -12.07952 -11.91068 -11.64156 -11.52038 -11.47147 -11.31833 -11.18875 -11.10009 -10.94752 -10.75570 -10.69282 -10.55746 -10.54637 -10.45012 -10.15919 -9.64290 -9.04599 -8.72625 -8.45386 -7.64424 -6.06045 -4.11191 1.96993 2.71004 3.28148 3.34151 3.36369 3.41860 3.63579 3.94363 4.39839 4.42446 4.45766 4.62941 4.73560 4.75045 4.89975 4.97552 5.06473 5.11226 5.18082 5.19207 5.26467 5.27429 5.31044 5.38340 5.46194 5.47755 5.53108 5.57991 5.65358 5.67623 5.69794 5.77750 5.85212 5.89734 5.92355 5.97059 6.11051 6.20985 6.28095 6.38337 6.39919 7.04857 7.19581 7.44045 7.53169 7.90459 8.15885 8.21585 8.41058 8.88224 9.08274 9.54168 11.01966 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013679 B = 0.002818 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.439329 B = 9933.535343 C =11069.490195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.147 4.147 4 C 0.091 3.909 5 O -0.367 6.367 6 C 0.651 3.349 7 O -0.577 6.577 8 N -0.592 5.592 9 C 0.116 3.884 10 C -0.133 4.133 11 C -0.107 4.107 12 C 0.510 3.490 13 O -0.541 6.541 14 N -0.602 5.602 15 C 0.075 3.925 16 C 0.244 3.756 17 C -0.527 4.527 18 H 0.057 0.943 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.114 4.114 26 C 0.128 3.872 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.031 0.969 45 H 0.044 0.956 46 H 0.263 0.737 47 H 0.085 0.915 48 H 0.078 0.922 49 H 0.073 0.927 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.839 18.567 5.860 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.204 4.204 4 C 0.016 3.984 5 O -0.281 6.281 6 C 0.406 3.594 7 O -0.467 6.467 8 N -0.332 5.332 9 C -0.007 4.007 10 C -0.171 4.171 11 C -0.129 4.129 12 C 0.296 3.704 13 O -0.419 6.419 14 N -0.334 5.334 15 C -0.069 4.069 16 C 0.125 3.875 17 C -0.565 4.565 18 H 0.075 0.925 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.153 4.153 26 C 0.007 3.993 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.103 0.897 48 H 0.097 0.903 49 H 0.091 0.909 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.064 17.692 6.211 24.690 hybrid contribution -0.209 -0.324 -1.044 1.113 sum -16.272 17.367 5.167 24.354 Atomic orbital electron populations 1.21774 0.93583 1.02414 1.02530 1.21188 0.95939 0.97000 0.97463 1.21827 1.01907 0.94918 1.01762 1.23077 0.75057 1.01249 0.99009 1.86202 1.24199 1.73186 1.44468 1.17978 0.83066 0.77490 0.80876 1.90976 1.64250 1.53877 1.37564 1.46975 1.02357 1.60285 1.23609 1.21680 0.94260 0.95952 0.88801 1.21998 0.98687 0.98724 0.97661 1.21313 0.96561 0.97997 0.96985 1.20216 0.81428 0.89513 0.79261 1.90664 1.71650 1.20849 1.58717 1.48130 1.30539 1.07498 1.47227 1.21847 1.00597 0.82998 1.01425 1.19299 0.89522 0.85575 0.93136 1.21426 1.12275 1.20245 1.02599 0.92500 1.24942 0.94964 0.95813 0.98414 1.69930 1.19990 1.25290 1.38116 0.86503 0.79492 0.77776 0.83695 1.20622 1.21078 1.19908 1.21761 0.97405 0.97365 0.98769 1.21752 0.95728 0.94542 0.87276 0.92278 0.91583 0.92194 0.89849 0.91855 0.92401 0.92727 0.91250 0.91198 0.88782 0.90907 0.88900 0.90606 0.89167 0.93873 0.90651 0.91865 0.95090 0.93801 0.92698 0.89675 0.90348 0.90922 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.19 37.16 0.34 -0.48 16 2 C -0.10 -0.70 3.16 -90.62 -0.29 -0.99 16 3 C -0.15 -0.98 9.09 37.15 0.34 -0.64 16 4 C 0.09 0.87 4.85 37.16 0.18 1.05 16 5 O -0.37 -4.27 8.40 -40.32 -0.34 -4.61 16 6 C 0.65 8.87 8.43 54.05 0.46 9.33 16 7 O -0.58 -9.37 15.54 -19.28 -0.30 -9.67 16 8 N -0.59 -7.09 2.98 -178.80 -0.53 -7.62 16 9 C 0.12 1.15 6.42 -3.94 -0.03 1.13 16 10 C -0.13 -1.64 5.03 -26.83 -0.13 -1.78 16 11 C -0.11 -1.49 1.68 -91.73 -0.15 -1.64 16 12 C 0.51 10.23 6.94 -10.99 -0.08 10.16 16 13 O -0.54 -13.45 15.56 5.56 0.09 -13.36 16 14 N -0.60 -12.36 2.86 -182.95 -0.52 -12.88 16 15 C 0.08 1.11 9.83 59.85 0.59 1.70 16 16 C 0.24 6.32 5.17 -5.19 -0.03 6.30 16 17 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16 18 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 21 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 C -0.11 -1.55 4.68 -26.59 -0.12 -1.67 16 26 C 0.13 1.46 6.44 -3.69 -0.02 1.43 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.48 7.82 -51.93 -0.41 0.07 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.09 0.89 6.93 -51.93 -0.36 0.53 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.08 5.44 -51.93 -0.28 0.80 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.09 1.03 7.68 -51.93 -0.40 0.63 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 1.16 8.02 -51.93 -0.42 0.74 16 43 H 0.06 0.74 4.36 -51.93 -0.23 0.52 16 44 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 45 H 0.04 1.29 7.36 -51.92 -0.38 0.91 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 47 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.10 1.19 7.00 -51.93 -0.36 0.83 16 LS Contribution 397.92 15.07 6.00 6.00 Total: -1.00 -35.03 397.92 -7.98 -43.01 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -8.71 Total: -2.20 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 0.63 Total: 10.43 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.32 Total: -46.30 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.55 Total: -27.64 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.03 -7.98 -43.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069739508.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.633 kcal (2) G-P(sol) polarization free energy of solvation -35.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds