Wall clock time and date at job start Tue Mar 31 2020 05:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47208 * 2 1 4 4 C 1.46497 * 120.00049 * 269.99731 * 3 2 1 5 5 C 1.34777 * 119.99931 * 90.00280 * 3 2 1 6 6 O 1.21283 * 119.99898 * 6.29670 * 5 3 2 7 7 C 1.50703 * 119.99863 * 186.29538 * 5 3 2 8 8 H 1.09005 * 109.46957 * 306.76737 * 7 5 3 9 9 C 1.52993 * 109.47027 * 66.77107 * 7 5 3 10 10 N 1.46494 * 109.46706 * 186.77011 * 7 5 3 11 11 C 1.34783 * 120.00106 * 155.00305 * 10 7 5 12 12 O 1.21588 * 119.99467 * 4.87727 * 11 10 7 13 13 N 1.34776 * 119.99992 * 184.88085 * 11 10 7 14 14 C 1.47074 * 120.88636 * 354.68666 * 13 11 10 15 15 C 1.53232 * 108.52373 * 231.16468 * 14 13 11 16 16 N 1.46904 * 109.34156 * 306.17014 * 15 14 13 17 17 C 1.46894 * 111.00097 * 187.25063 * 16 15 14 18 18 C 1.50702 * 109.47065 * 169.99866 * 17 16 15 19 19 H 1.07998 * 119.99817 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99917 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99616 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00273 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47349 * 90.00092 * 22 20 18 24 24 H 1.48499 * 109.47204 * 210.00280 * 22 20 18 25 25 H 1.48509 * 109.46868 * 329.99828 * 22 20 18 26 26 C 1.46904 * 111.26672 * 63.10044 * 16 15 14 27 27 C 1.47086 * 120.87664 * 174.66283 * 13 11 10 28 28 H 1.08993 * 109.47234 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46823 * 299.99912 * 1 2 3 30 30 H 1.08999 * 109.47050 * 59.99760 * 1 2 3 31 31 H 1.08997 * 109.46823 * 240.00088 * 2 1 3 32 32 H 1.08999 * 109.47050 * 120.00240 * 2 1 3 33 33 H 1.08996 * 109.47353 * 264.75199 * 4 3 2 34 34 H 1.09005 * 109.47218 * 24.74864 * 4 3 2 35 35 H 1.09002 * 109.47289 * 144.74529 * 4 3 2 36 36 H 1.09004 * 109.47488 * 66.95215 * 9 7 5 37 37 H 1.09000 * 109.46993 * 186.95352 * 9 7 5 38 38 H 1.09007 * 109.47057 * 306.95157 * 9 7 5 39 39 H 0.97006 * 120.00389 * 334.99552 * 10 7 5 40 40 H 1.09002 * 109.63224 * 111.44914 * 14 13 11 41 41 H 1.09005 * 109.62503 * 350.87232 * 14 13 11 42 42 H 1.09000 * 109.49532 * 186.20493 * 15 14 13 43 43 H 1.09008 * 109.49261 * 66.12710 * 15 14 13 44 44 H 1.08996 * 109.47545 * 289.99923 * 17 16 15 45 45 H 1.09007 * 109.46900 * 50.00085 * 17 16 15 46 46 H 0.97004 * 119.99813 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.48943 * 56.85970 * 26 16 15 48 48 H 1.09003 * 109.48564 * 176.93951 * 26 16 15 49 49 H 1.09001 * 109.62932 * 9.12818 * 27 13 11 50 50 H 1.09000 * 109.62936 * 248.54694 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 2.2431 2.0165 1.1672 6 8 2.1514 1.4115 2.2144 7 6 2.6082 3.4786 1.1711 8 1 3.4615 3.6418 0.5127 9 6 1.4178 4.3029 0.6771 10 7 2.9564 3.8912 2.5330 11 6 3.7711 4.9468 2.7298 12 8 4.1456 5.6106 1.7825 13 7 4.1705 5.2665 3.9767 14 6 3.6391 4.5507 5.1465 15 6 3.1322 5.5826 6.1596 16 7 4.2041 6.5432 6.4534 17 6 3.8174 7.4454 7.5463 18 6 5.0163 8.2467 7.9841 19 1 5.9700 8.1007 7.4987 20 6 4.8957 9.1663 9.0042 21 7 5.9421 9.8652 9.3866 22 14 3.2464 9.4185 9.8443 23 1 3.1328 8.4928 10.9998 24 1 3.1433 10.8209 10.3215 25 1 2.1520 9.1423 8.8792 26 6 4.5835 7.3016 5.2538 27 6 5.1499 6.3401 4.2036 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.3151 1.9787 -1.5363 34 1 1.6482 1.6245 -2.0501 35 1 2.0062 3.1260 -1.1638 36 1 0.6053 4.2377 1.4009 37 1 1.7194 5.3440 0.5623 38 1 1.0804 3.9142 -0.2838 39 1 2.6006 3.4048 3.2931 40 1 4.4289 3.9509 5.5987 41 1 2.8163 3.9055 4.8382 42 1 2.8362 5.0756 7.0780 43 1 2.2746 6.1108 5.7427 44 1 3.0355 8.1212 7.2001 45 1 3.4454 6.8594 8.3868 46 1 5.8572 10.5125 10.1041 47 1 3.7057 7.8058 4.8497 48 1 5.3401 8.0413 5.5155 49 1 5.3261 6.8779 3.2721 50 1 6.0849 5.9123 4.5652 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601597069.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:42 Heat of formation + Delta-G solvation = -32.022186 kcal Electronic energy + Delta-G solvation = -28792.721249 eV Core-core repulsion = 24856.200774 eV Total energy + Delta-G solvation = -3936.520475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.92695 -39.89285 -37.77301 -36.37551 -35.25470 -34.48271 -32.47248 -32.09744 -30.88011 -30.07964 -28.47682 -27.33184 -25.72635 -25.04904 -23.53323 -22.87601 -21.74815 -20.60549 -19.88824 -19.38243 -18.17638 -17.21897 -16.86611 -16.58319 -16.11009 -15.99186 -15.42931 -14.99707 -14.57777 -14.54180 -14.40570 -14.09819 -13.96505 -13.90526 -13.61905 -13.43465 -13.19955 -13.16256 -13.09057 -12.65314 -12.44055 -12.39498 -12.17123 -12.06034 -11.77107 -11.55545 -11.48725 -11.22359 -10.92008 -10.75866 -10.53463 -10.36093 -10.16129 -10.01581 -9.88205 -9.32902 -9.28677 -9.17468 -8.58851 -8.38696 -7.43553 -6.07033 -4.04805 2.15015 2.27813 2.81896 3.24220 3.27207 3.34902 3.36423 3.87668 3.96631 4.40211 4.54809 4.58959 4.63830 4.69859 4.75201 4.80679 4.93545 4.97715 5.09832 5.17874 5.23542 5.24777 5.32358 5.33880 5.40875 5.44778 5.51549 5.63360 5.71720 5.79392 5.84822 5.90434 6.00061 6.02629 6.12588 6.29953 6.38861 6.51712 6.62069 6.82571 6.84145 6.95011 7.04038 7.54673 7.66525 7.81828 7.97051 7.99002 8.61658 8.62325 9.00872 9.54332 11.05842 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.028041 B = 0.002325 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.287117 B =12039.996404 C =12474.711528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.109 3.891 3 N -0.615 5.615 4 C 0.060 3.940 5 C 0.514 3.486 6 O -0.532 6.532 7 C 0.148 3.852 8 H 0.111 0.889 9 C -0.167 4.167 10 N -0.736 5.736 11 C 0.712 3.288 12 O -0.596 6.596 13 N -0.623 5.623 14 C 0.118 3.882 15 C 0.038 3.962 16 N -0.526 5.526 17 C 0.163 3.837 18 C -0.511 4.511 19 H 0.082 0.918 20 C 0.069 3.931 21 N -0.899 5.899 22 Si 0.875 3.125 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.269 1.269 26 C 0.050 3.950 27 C 0.133 3.867 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.405 0.595 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.027 0.973 44 H -0.011 1.011 45 H 0.025 0.975 46 H 0.264 0.736 47 H 0.025 0.975 48 H 0.103 0.897 49 H 0.091 0.909 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.108 -18.638 -22.275 31.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.013 4.013 3 N -0.349 5.349 4 C -0.083 4.083 5 C 0.301 3.699 6 O -0.408 6.408 7 C 0.038 3.962 8 H 0.129 0.871 9 C -0.225 4.225 10 N -0.396 5.396 11 C 0.414 3.586 12 O -0.475 6.475 13 N -0.359 5.359 14 C -0.006 4.006 15 C -0.091 4.091 16 N -0.250 5.250 17 C 0.037 3.963 18 C -0.549 4.549 19 H 0.100 0.900 20 C -0.133 4.133 21 N -0.537 5.537 22 Si 0.703 3.297 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.194 1.194 26 C -0.079 4.079 27 C 0.011 3.989 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.244 0.756 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.045 0.955 44 H 0.006 0.994 45 H 0.043 0.957 46 H 0.074 0.926 47 H 0.043 0.957 48 H 0.121 0.879 49 H 0.109 0.891 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.388 -18.612 -22.109 30.711 hybrid contribution -1.821 0.389 0.668 1.978 sum -12.209 -18.223 -21.441 30.673 Atomic orbital electron populations 1.22139 0.95679 1.02417 1.02392 1.21475 0.94458 0.81887 1.03490 1.47779 1.66456 1.14492 1.06177 1.22196 1.01942 0.98935 0.85180 1.20749 0.76400 0.89157 0.83580 1.90694 1.51267 1.67630 1.31232 1.20489 1.00037 0.89946 0.85755 0.87106 1.22343 0.97067 1.01684 1.01429 1.45004 1.53081 1.33718 1.07772 1.15711 0.78731 0.80667 0.83529 1.90878 1.62278 1.53797 1.40540 1.47384 1.46065 1.38606 1.03887 1.21769 0.98512 0.94355 0.85961 1.22432 0.93363 0.95137 0.98193 1.61898 1.37162 1.18841 1.07139 1.20176 0.96528 0.90706 0.88935 1.21012 0.96224 1.19335 1.18309 0.90002 1.24900 0.96298 0.95531 0.96598 1.69894 1.29299 1.25205 1.29348 0.86863 0.85024 0.77603 0.80249 1.20141 1.21205 1.19360 1.22410 1.00546 0.95472 0.89489 1.21764 0.90402 0.87463 0.99316 0.91409 0.92213 0.92502 0.90365 0.89584 0.91999 0.90499 0.89643 0.91740 0.90112 0.90653 0.75590 0.90387 0.90956 0.90025 0.95473 0.99375 0.95667 0.92633 0.95661 0.87879 0.89069 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 10.24 37.16 0.38 -0.54 16 2 C 0.11 0.67 6.15 -4.04 -0.02 0.65 16 3 N -0.61 -4.44 2.87 -181.57 -0.52 -4.97 16 4 C 0.06 0.25 9.80 59.85 0.59 0.84 16 5 C 0.51 5.27 7.03 -10.98 -0.08 5.20 16 6 O -0.53 -7.12 15.37 5.56 0.09 -7.03 16 7 C 0.15 1.52 2.13 -69.09 -0.15 1.38 16 8 H 0.11 1.16 7.28 -51.93 -0.38 0.78 16 9 C -0.17 -1.43 9.08 37.15 0.34 -1.09 16 10 N -0.74 -9.33 4.90 -59.82 -0.29 -9.62 16 11 C 0.71 11.07 8.27 -86.91 -0.72 10.36 16 12 O -0.60 -10.72 15.51 5.29 0.08 -10.64 16 13 N -0.62 -9.71 3.01 -178.19 -0.54 -10.24 16 14 C 0.12 1.64 6.53 -3.61 -0.02 1.62 16 15 C 0.04 0.63 5.62 -3.70 -0.02 0.61 16 16 N -0.53 -10.72 4.62 -235.76 -1.09 -11.81 16 17 C 0.16 3.88 3.79 -4.98 -0.02 3.86 16 18 C -0.51 -14.24 8.96 -34.44 -0.31 -14.55 16 19 H 0.08 2.47 7.37 -52.49 -0.39 2.08 16 20 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 21 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 22 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 26 C 0.05 0.96 5.46 -3.70 -0.02 0.94 16 27 C 0.13 2.22 6.61 -3.60 -0.02 2.20 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 32 H 0.09 0.68 7.35 -51.93 -0.38 0.30 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.08 0.18 8.03 -51.93 -0.42 -0.24 16 35 H 0.09 0.34 4.28 -51.93 -0.22 0.12 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.44 5.36 -51.92 -0.28 0.16 16 39 H 0.40 4.98 5.27 -40.82 -0.22 4.76 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.07 0.84 5.75 -51.93 -0.30 0.54 16 42 H 0.08 1.25 7.99 -51.93 -0.41 0.84 16 43 H 0.03 0.46 8.14 -51.92 -0.42 0.03 16 44 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 45 H 0.03 0.60 7.40 -51.92 -0.38 0.21 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.10 2.17 6.67 -51.93 -0.35 1.82 16 49 H 0.09 1.52 7.04 -51.93 -0.37 1.15 16 50 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 388.37 15.07 5.85 5.85 Total: -1.00 -34.34 388.37 -8.77 -43.11 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -8.27 Total: 1.85 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: -0.18 Total: 13.33 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -1.67 Total: -63.15 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.17 Total: -17.67 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.34 -8.77 -43.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601597069.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.085 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds