Wall clock time and date at job start Tue Mar 31 2020 04:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47089 * 2 1 4 4 C 1.52993 * 109.46761 * 239.99804 * 2 1 3 5 5 C 1.53002 * 109.47042 * 174.99931 * 4 2 1 6 6 H 1.09002 * 109.47340 * 305.00408 * 5 4 2 7 7 C 1.52998 * 109.47571 * 184.99920 * 5 4 2 8 8 N 1.46900 * 109.47047 * 65.00024 * 5 4 2 9 9 N 1.46504 * 109.46943 * 119.99753 * 2 1 3 10 10 C 1.34771 * 119.99918 * 275.00087 * 9 2 1 11 11 O 1.21344 * 120.00353 * 359.97438 * 10 9 2 12 12 C 1.49451 * 119.99638 * 180.02562 * 10 9 2 13 13 O 1.21344 * 120.00008 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99943 * 179.97438 * 12 10 9 15 15 C 1.46504 * 120.00223 * 179.97438 * 14 12 10 16 16 C 1.53035 * 109.45880 * 275.03233 * 15 14 12 17 17 C 1.53197 * 109.30887 * 178.60137 * 16 15 14 18 18 N 1.46924 * 108.76832 * 54.65284 * 17 16 15 19 19 C 1.36937 * 120.63309 * 126.40409 * 18 17 16 20 20 H 1.07996 * 119.99913 * 331.83260 * 19 18 17 21 21 C 1.38805 * 119.99944 * 151.82391 * 19 18 17 22 22 N 1.31618 * 120.00426 * 343.07747 * 21 19 18 23 23 Si 1.86807 * 119.99990 * 163.06907 * 21 19 18 24 24 H 1.48499 * 109.46886 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46971 * 120.00274 * 23 21 19 26 26 H 1.48494 * 109.47197 * 240.00564 * 23 21 19 27 27 C 1.46924 * 118.73431 * 306.38417 * 18 17 16 28 28 C 1.53037 * 109.45857 * 154.97350 * 15 14 12 29 29 H 1.09002 * 109.47258 * 299.99904 * 1 2 3 30 30 H 1.09003 * 109.47283 * 59.99976 * 1 2 3 31 31 H 1.09005 * 109.47284 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47589 * 294.99914 * 4 2 1 33 33 H 1.09000 * 109.47441 * 55.00569 * 4 2 1 34 34 H 1.09008 * 109.47001 * 60.00090 * 7 5 4 35 35 H 1.09004 * 109.47548 * 179.97438 * 7 5 4 36 36 H 1.09002 * 109.47187 * 300.00582 * 7 5 4 37 37 H 1.00900 * 111.00326 * 56.04477 * 8 5 4 38 38 H 1.00900 * 111.00368 * 180.02562 * 8 5 4 39 39 H 0.96996 * 119.99356 * 94.99957 * 9 2 1 40 40 H 0.96999 * 119.99947 * 359.97438 * 14 12 10 41 41 H 1.09001 * 109.45317 * 34.99802 * 15 14 12 42 42 H 1.09001 * 109.50042 * 298.55759 * 16 15 14 43 43 H 1.08996 * 109.50324 * 58.65978 * 16 15 14 44 44 H 1.09001 * 109.59796 * 294.86445 * 17 16 15 45 45 H 1.09008 * 109.70195 * 174.50373 * 17 16 15 46 46 H 0.97002 * 120.00329 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.58824 * 293.81681 * 27 18 17 48 48 H 1.09003 * 109.70377 * 173.46451 * 27 18 17 49 49 H 1.09003 * 109.49947 * 301.34015 * 28 15 14 50 50 H 1.09000 * 109.50056 * 61.43637 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 1 3.8571 0.4358 -1.2678 7 6 4.0645 -1.2251 -2.6240 8 7 4.1553 -1.3362 -0.1793 9 7 2.0183 -0.6906 1.1962 10 6 2.1470 -0.0182 2.3571 11 8 1.8589 1.1593 2.4115 12 6 2.6457 -0.7226 3.5773 13 8 2.9343 -1.9000 3.5228 14 7 2.7749 -0.0501 4.7381 15 6 3.2632 -0.7407 5.9344 16 6 2.0934 -1.4350 6.6354 17 6 2.6132 -2.1848 7.8661 18 7 3.3526 -1.2421 8.7166 19 6 3.0347 -1.1002 10.0410 20 1 2.0262 -1.2897 10.3776 21 6 4.0088 -0.7128 10.9508 22 7 5.2821 -0.8022 10.6298 23 14 3.5126 -0.0643 12.6310 24 1 2.0319 -0.0636 12.7436 25 1 4.0886 -0.9346 13.6873 26 1 4.0227 1.3203 12.7976 27 6 4.4398 -0.4549 8.1191 28 6 3.8995 0.2754 6.8855 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7516 -1.7716 -1.2056 33 1 1.6054 -0.2618 -2.1369 34 1 3.6263 -0.6887 -3.4658 35 1 5.1508 -1.1478 -2.6702 36 1 3.7722 -2.2742 -2.6699 37 1 3.8472 -2.2969 -0.1628 38 1 5.1625 -1.2794 -0.1991 39 1 2.2490 -1.6317 1.1526 40 1 2.5445 0.8911 4.7816 41 1 4.0067 -1.4839 5.6464 42 1 1.3611 -0.6896 6.9459 43 1 1.6258 -2.1415 5.9498 44 1 3.2768 -2.9899 7.5504 45 1 1.7744 -2.6004 8.4247 46 1 5.9628 -0.5312 11.2655 47 1 5.2523 -1.1188 7.8241 48 1 4.8072 0.2729 8.8427 49 1 4.7177 0.7863 6.3778 50 1 3.1501 1.0045 7.1935 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326547708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:07 Heat of formation + Delta-G solvation = -60.475208 kcal Electronic energy + Delta-G solvation = -28616.405876 eV Core-core repulsion = 24678.651586 eV Total energy + Delta-G solvation = -3937.754290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.54942 -38.96960 -37.62743 -37.18231 -35.03742 -34.31027 -32.08472 -31.49062 -30.13884 -29.44141 -29.21739 -27.23192 -25.71252 -24.22185 -22.28911 -22.02178 -21.30226 -21.02971 -20.06291 -19.42687 -18.13106 -17.06404 -16.69553 -16.35485 -15.86315 -15.42387 -15.21075 -15.07436 -14.75941 -14.29707 -13.93521 -13.83780 -13.62899 -13.58806 -13.46686 -13.08072 -12.97903 -12.83463 -12.57044 -12.47755 -12.38333 -12.31485 -11.75220 -11.50522 -11.41881 -11.21100 -11.11078 -11.10794 -10.80211 -10.71893 -10.45515 -10.26423 -10.02581 -9.78933 -9.62254 -9.34048 -9.27140 -8.84213 -8.74901 -8.45017 -6.67335 -5.78263 -3.20516 1.67724 2.58392 3.38503 3.46563 3.47560 3.48886 3.82288 4.12612 4.22518 4.50990 4.51449 4.70986 4.75914 4.88634 4.95831 5.07812 5.18096 5.33654 5.34315 5.40697 5.42151 5.45081 5.51502 5.51879 5.58261 5.66703 5.77684 5.87348 5.95326 6.08823 6.25706 6.32971 6.35665 6.53939 6.54725 6.60358 6.79343 6.80118 6.84920 6.99602 7.07773 7.21937 7.33393 7.59782 7.68141 7.81579 7.99712 8.27045 8.45928 9.22036 9.85190 10.42061 11.30682 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.028909 B = 0.002263 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.311766 B =12370.568525 C =12710.619551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 H 0.088 0.912 4 C -0.123 4.123 5 C 0.085 3.915 6 H 0.082 0.918 7 C -0.188 4.188 8 N -0.838 5.838 9 N -0.671 5.671 10 C 0.511 3.489 11 O -0.535 6.535 12 C 0.504 3.496 13 O -0.525 6.525 14 N -0.694 5.694 15 C 0.150 3.850 16 C -0.140 4.140 17 C 0.148 3.852 18 N -0.593 5.593 19 C -0.251 4.251 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.175 3.825 28 C -0.148 4.148 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.338 0.662 38 H 0.343 0.657 39 H 0.412 0.588 40 H 0.407 0.593 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.021 0.979 45 H 0.057 0.943 46 H 0.253 0.747 47 H 0.022 0.978 48 H 0.092 0.908 49 H 0.056 0.944 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.188 0.542 -26.694 27.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.044 3.956 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.027 4.027 6 H 0.100 0.900 7 C -0.247 4.247 8 N -0.368 5.368 9 N -0.324 5.324 10 C 0.292 3.708 11 O -0.413 6.413 12 C 0.285 3.715 13 O -0.401 6.401 14 N -0.345 5.345 15 C 0.047 3.953 16 C -0.180 4.180 17 C 0.021 3.979 18 N -0.316 5.316 19 C -0.380 4.380 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.732 3.268 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.048 3.952 28 C -0.187 4.187 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.249 0.751 40 H 0.242 0.758 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.039 0.961 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.040 0.960 48 H 0.111 0.889 49 H 0.075 0.925 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.438 1.087 -26.112 26.694 hybrid contribution 0.332 -0.247 -0.001 0.414 sum -5.105 0.839 -26.113 26.621 Atomic orbital electron populations 1.22231 0.95270 1.02294 1.02760 1.20901 0.93459 0.97594 0.83658 0.89356 1.22008 0.94973 1.01497 0.97609 1.21493 0.94018 0.98983 0.88220 0.90012 1.22653 1.01443 1.01363 0.99237 1.58946 1.13862 1.19153 1.44865 1.45597 1.64056 1.14788 1.07913 1.20223 0.78763 0.86874 0.84938 1.90723 1.49748 1.15602 1.85180 1.20088 0.79707 0.87173 0.84578 1.90729 1.48999 1.15320 1.85075 1.46197 1.64436 1.14681 1.09171 1.21181 0.96415 0.95191 0.82529 1.22395 0.97428 0.99829 0.98356 1.20871 0.95336 0.91397 0.90274 1.44107 1.38359 1.42750 1.06359 1.19229 0.93612 1.42147 0.83041 0.91583 1.25058 0.95088 1.01852 0.97730 1.70032 0.98782 1.50358 1.35598 0.86226 0.77999 0.78470 0.84102 1.20258 1.21760 1.21561 1.20746 0.89083 0.94409 0.90948 1.22560 0.99941 0.98112 0.98135 0.91792 0.91583 0.92378 0.91180 0.89745 0.92119 0.92596 0.92643 0.84894 0.84384 0.75106 0.75789 0.89690 0.92111 0.92668 0.96124 0.92469 0.93656 0.96035 0.88945 0.92531 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 9.48 37.16 0.35 -0.93 16 2 C 0.15 1.22 2.57 -67.93 -0.17 1.04 16 3 H 0.09 0.87 7.58 -51.93 -0.39 0.47 16 4 C -0.12 -0.66 4.47 -26.73 -0.12 -0.78 16 5 C 0.08 0.49 3.37 -67.71 -0.23 0.26 16 6 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 7 C -0.19 -0.87 9.48 37.16 0.35 -0.52 16 8 N -0.84 -5.68 7.05 -4.67 -0.03 -5.71 16 9 N -0.67 -6.92 3.79 -54.24 -0.21 -7.12 16 10 C 0.51 7.01 7.85 -11.59 -0.09 6.92 16 11 O -0.54 -8.35 16.14 5.50 0.09 -8.26 16 12 C 0.50 7.80 7.85 -11.58 -0.09 7.71 16 13 O -0.52 -9.03 16.14 5.50 0.09 -8.94 16 14 N -0.69 -10.79 5.07 -54.20 -0.27 -11.06 16 15 C 0.15 2.66 2.42 -67.89 -0.16 2.49 16 16 C -0.14 -2.58 5.65 -26.61 -0.15 -2.73 16 17 C 0.15 3.18 6.52 -3.71 -0.02 3.16 16 18 N -0.59 -14.85 2.99 -172.32 -0.52 -15.36 16 19 C -0.25 -6.86 9.58 -15.06 -0.14 -7.01 16 20 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 21 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 22 N -0.90 -26.10 11.19 55.49 0.62 -25.48 16 23 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 28 C -0.15 -2.77 5.55 -26.61 -0.15 -2.92 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.26 8.14 -51.92 -0.42 -0.17 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.34 2.03 8.60 -39.29 -0.34 1.69 16 38 H 0.34 2.20 9.04 -39.29 -0.36 1.85 16 39 H 0.41 4.01 6.81 -40.82 -0.28 3.73 16 40 H 0.41 5.89 8.07 -40.82 -0.33 5.56 16 41 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 1.20 7.93 -51.92 -0.41 0.79 16 46 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.09 2.42 6.07 -51.93 -0.31 2.11 16 49 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 398.31 15.07 6.00 6.00 Total: -1.00 -31.29 398.31 -8.70 -39.99 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -8.70 Total: 8.57 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -0.74 Total: 10.75 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: -0.41 Total: -64.74 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: 0.18 Total: -17.20 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.29 -8.70 -39.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326547708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.483 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds