Wall clock time and date at job start Tue Mar 31 2020 04:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47089 * 2 1 4 4 C 1.52993 * 109.46761 * 239.99804 * 2 1 3 5 5 C 1.53002 * 109.47042 * 174.99931 * 4 2 1 6 6 H 1.09002 * 109.47340 * 305.00408 * 5 4 2 7 7 C 1.52998 * 109.47571 * 184.99920 * 5 4 2 8 8 N 1.46900 * 109.47047 * 65.00024 * 5 4 2 9 9 N 1.46504 * 109.46943 * 119.99753 * 2 1 3 10 10 C 1.34771 * 119.99918 * 275.00087 * 9 2 1 11 11 O 1.21344 * 120.00353 * 359.97438 * 10 9 2 12 12 C 1.49451 * 119.99638 * 180.02562 * 10 9 2 13 13 O 1.21344 * 120.00008 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99943 * 179.97438 * 12 10 9 15 15 C 1.46504 * 120.00223 * 179.97438 * 14 12 10 16 16 C 1.53035 * 109.45880 * 275.03233 * 15 14 12 17 17 C 1.53197 * 109.30887 * 178.60137 * 16 15 14 18 18 N 1.46924 * 108.76832 * 54.65284 * 17 16 15 19 19 C 1.36937 * 120.63309 * 126.40409 * 18 17 16 20 20 H 1.07996 * 119.99913 * 331.83260 * 19 18 17 21 21 C 1.38805 * 119.99944 * 151.82391 * 19 18 17 22 22 N 1.31618 * 120.00426 * 343.07747 * 21 19 18 23 23 Si 1.86807 * 119.99990 * 163.06907 * 21 19 18 24 24 H 1.48499 * 109.46886 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46971 * 120.00274 * 23 21 19 26 26 H 1.48494 * 109.47197 * 240.00564 * 23 21 19 27 27 C 1.46924 * 118.73431 * 306.38417 * 18 17 16 28 28 C 1.53037 * 109.45857 * 154.97350 * 15 14 12 29 29 H 1.09002 * 109.47258 * 299.99904 * 1 2 3 30 30 H 1.09003 * 109.47283 * 59.99976 * 1 2 3 31 31 H 1.09005 * 109.47284 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47589 * 294.99914 * 4 2 1 33 33 H 1.09000 * 109.47441 * 55.00569 * 4 2 1 34 34 H 1.09008 * 109.47001 * 60.00090 * 7 5 4 35 35 H 1.09004 * 109.47548 * 179.97438 * 7 5 4 36 36 H 1.09002 * 109.47187 * 300.00582 * 7 5 4 37 37 H 1.00900 * 111.00326 * 56.04477 * 8 5 4 38 38 H 1.00900 * 111.00368 * 180.02562 * 8 5 4 39 39 H 0.96996 * 119.99356 * 94.99957 * 9 2 1 40 40 H 0.96999 * 119.99947 * 359.97438 * 14 12 10 41 41 H 1.09001 * 109.45317 * 34.99802 * 15 14 12 42 42 H 1.09001 * 109.50042 * 298.55759 * 16 15 14 43 43 H 1.08996 * 109.50324 * 58.65978 * 16 15 14 44 44 H 1.09001 * 109.59796 * 294.86445 * 17 16 15 45 45 H 1.09008 * 109.70195 * 174.50373 * 17 16 15 46 46 H 0.97002 * 120.00329 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.58824 * 293.81681 * 27 18 17 48 48 H 1.09003 * 109.70377 * 173.46451 * 27 18 17 49 49 H 1.09003 * 109.49947 * 301.34015 * 28 15 14 50 50 H 1.09000 * 109.50056 * 61.43637 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 1 3.8571 0.4358 -1.2678 7 6 4.0645 -1.2251 -2.6240 8 7 4.1553 -1.3362 -0.1793 9 7 2.0183 -0.6906 1.1962 10 6 2.1470 -0.0182 2.3571 11 8 1.8589 1.1593 2.4115 12 6 2.6457 -0.7226 3.5773 13 8 2.9343 -1.9000 3.5228 14 7 2.7749 -0.0501 4.7381 15 6 3.2632 -0.7407 5.9344 16 6 2.0934 -1.4350 6.6354 17 6 2.6132 -2.1848 7.8661 18 7 3.3526 -1.2421 8.7166 19 6 3.0347 -1.1002 10.0410 20 1 2.0262 -1.2897 10.3776 21 6 4.0088 -0.7128 10.9508 22 7 5.2821 -0.8022 10.6298 23 14 3.5126 -0.0643 12.6310 24 1 2.0319 -0.0636 12.7436 25 1 4.0886 -0.9346 13.6873 26 1 4.0227 1.3203 12.7976 27 6 4.4398 -0.4549 8.1191 28 6 3.8995 0.2754 6.8855 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7516 -1.7716 -1.2056 33 1 1.6054 -0.2618 -2.1369 34 1 3.6263 -0.6887 -3.4658 35 1 5.1508 -1.1478 -2.6702 36 1 3.7722 -2.2742 -2.6699 37 1 3.8472 -2.2969 -0.1628 38 1 5.1625 -1.2794 -0.1991 39 1 2.2490 -1.6317 1.1526 40 1 2.5445 0.8911 4.7816 41 1 4.0067 -1.4839 5.6464 42 1 1.3611 -0.6896 6.9459 43 1 1.6258 -2.1415 5.9498 44 1 3.2768 -2.9899 7.5504 45 1 1.7744 -2.6004 8.4247 46 1 5.9628 -0.5312 11.2655 47 1 5.2523 -1.1188 7.8241 48 1 4.8072 0.2729 8.8427 49 1 4.7177 0.7863 6.3778 50 1 3.1501 1.0045 7.1935 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326547708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:07 Heat of formation + Delta-G solvation = -83.368227 kcal Electronic energy + Delta-G solvation = -28617.398592 eV Core-core repulsion = 24678.651586 eV Total energy + Delta-G solvation = -3938.747006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.69475 -40.12925 -38.85226 -38.28929 -36.20785 -35.48601 -33.89301 -32.28092 -31.83221 -31.21652 -29.71772 -27.72340 -27.35066 -25.69336 -23.94656 -23.49063 -22.14574 -21.70113 -21.29509 -20.91952 -19.43600 -18.55916 -18.01127 -17.19767 -16.91211 -16.84744 -16.46214 -16.23350 -15.67365 -15.61688 -15.36305 -15.11372 -14.98404 -14.75561 -14.48533 -14.30359 -14.13293 -14.09099 -13.54147 -13.40957 -13.22119 -13.05749 -13.01944 -12.86947 -12.66924 -12.61229 -12.45695 -12.28244 -12.18932 -12.00411 -11.87101 -11.75712 -11.64479 -11.57365 -11.35870 -10.56130 -10.53188 -10.17305 -10.09268 -9.41984 -8.70276 -7.87348 -5.32782 0.51026 1.46109 1.49261 1.50120 1.60614 2.30841 2.52422 2.76094 3.28889 3.51197 3.65396 3.69256 3.75878 3.87034 4.01443 4.02382 4.25723 4.30712 4.38176 4.43343 4.45286 4.59671 4.64732 4.72456 4.75875 4.79965 4.84353 4.95200 4.96814 4.98035 5.03773 5.05286 5.14100 5.18994 5.28516 5.29827 5.35604 5.39369 5.47458 5.52877 5.65474 5.70836 6.10281 6.33820 6.39896 6.53249 6.61178 6.90269 7.12855 7.15095 7.84632 8.37208 9.19926 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.028909 B = 0.002263 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.311766 B =12370.568525 C =12710.619551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.073 0.927 4 C -0.114 4.114 5 C 0.085 3.915 6 H 0.069 0.931 7 C -0.180 4.180 8 N -0.852 5.852 9 N -0.652 5.652 10 C 0.513 3.487 11 O -0.558 6.558 12 C 0.505 3.495 13 O -0.542 6.542 14 N -0.688 5.688 15 C 0.161 3.839 16 C -0.125 4.125 17 C 0.146 3.854 18 N -0.610 5.610 19 C -0.261 4.261 20 H 0.067 0.933 21 C -0.050 4.050 22 N -0.935 5.935 23 Si 0.968 3.032 24 H -0.267 1.267 25 H -0.293 1.293 26 H -0.289 1.289 27 C 0.180 3.820 28 C -0.132 4.132 29 H 0.038 0.962 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.342 0.658 38 H 0.343 0.657 39 H 0.416 0.584 40 H 0.414 0.586 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.014 0.986 45 H 0.059 0.941 46 H 0.251 0.749 47 H 0.000 1.000 48 H 0.063 0.937 49 H 0.076 0.924 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.600 0.700 -28.630 29.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.026 4.026 6 H 0.087 0.913 7 C -0.239 4.239 8 N -0.383 5.383 9 N -0.304 5.304 10 C 0.293 3.707 11 O -0.437 6.437 12 C 0.286 3.714 13 O -0.420 6.420 14 N -0.340 5.340 15 C 0.057 3.943 16 C -0.166 4.166 17 C 0.020 3.980 18 N -0.333 5.333 19 C -0.391 4.391 20 H 0.085 0.915 21 C -0.246 4.246 22 N -0.581 5.581 23 Si 0.796 3.204 24 H -0.191 1.191 25 H -0.220 1.220 26 H -0.215 1.215 27 C 0.054 3.946 28 C -0.171 4.171 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.124 0.876 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.254 0.746 40 H 0.251 0.749 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.032 0.968 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.018 0.982 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.878 1.230 -28.105 28.960 hybrid contribution 0.777 -0.366 0.525 1.006 sum -6.102 0.864 -27.580 28.260 Atomic orbital electron populations 1.22198 0.94455 1.02834 1.02641 1.21106 0.94035 0.96999 0.83733 0.90930 1.21993 0.94541 1.01953 0.96727 1.21469 0.94300 0.98245 0.88597 0.91310 1.22557 1.01200 1.01552 0.98632 1.58963 1.14094 1.19595 1.45624 1.45655 1.62311 1.14887 1.07550 1.19891 0.79149 0.86555 0.85150 1.90720 1.51248 1.16320 1.85418 1.20436 0.79060 0.86965 0.84974 1.90721 1.49713 1.16144 1.85408 1.45975 1.64419 1.14957 1.08607 1.20834 0.95782 0.94562 0.83072 1.22204 0.97492 0.99788 0.97070 1.20968 0.94911 0.91100 0.91048 1.44360 1.38774 1.43909 1.06305 1.19536 0.93694 1.41623 0.84275 0.91481 1.25808 0.95064 1.02485 1.01220 1.70179 0.99669 1.51544 1.36693 0.85206 0.78058 0.77418 0.79739 1.19136 1.22044 1.21547 1.20548 0.88604 0.93476 0.92006 1.22295 1.00643 0.97829 0.96358 0.94240 0.89402 0.91467 0.90045 0.87615 0.91372 0.92982 0.92212 0.84416 0.84350 0.74568 0.74888 0.91088 0.91795 0.91518 0.96826 0.92198 0.94019 0.98220 0.91881 0.90575 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.48 71.98 0.68 -1.47 16 2 C 0.15 2.11 2.57 44.99 0.12 2.23 16 3 H 0.07 1.34 7.58 -2.39 -0.02 1.32 16 4 C -0.11 -0.93 4.47 30.59 0.14 -0.79 16 5 C 0.09 0.84 3.37 44.92 0.15 0.99 16 6 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 7 C -0.18 -1.30 9.48 71.98 0.68 -0.61 16 8 N -0.85 -10.48 7.05 -168.68 -1.19 -11.67 16 9 N -0.65 -12.52 3.79 -443.88 -1.68 -14.20 16 10 C 0.51 13.50 7.85 87.27 0.69 14.19 16 11 O -0.56 -16.93 16.14 -3.23 -0.05 -16.98 16 12 C 0.50 15.03 7.85 87.27 0.69 15.72 16 13 O -0.54 -18.05 16.14 -3.23 -0.05 -18.11 16 14 N -0.69 -20.52 5.07 -443.75 -2.25 -22.77 16 15 C 0.16 5.59 2.42 45.01 0.11 5.70 16 16 C -0.13 -4.49 5.65 30.67 0.17 -4.32 16 17 C 0.15 6.24 6.52 86.36 0.56 6.80 16 18 N -0.61 -30.86 2.99 -699.09 -2.09 -32.95 16 19 C -0.26 -14.39 9.58 84.03 0.81 -13.59 16 20 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 21 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 22 N -0.93 -55.25 11.19 21.65 0.24 -55.01 16 23 Si 0.97 44.89 29.59 68.60 2.03 46.92 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 26 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 27 C 0.18 8.66 5.30 86.36 0.46 9.11 16 28 C -0.13 -4.86 5.55 30.67 0.17 -4.69 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.11 0.48 8.14 -2.39 -0.02 0.47 16 34 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 35 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.06 0.39 8.14 -2.39 -0.02 0.38 16 37 H 0.34 3.58 8.60 -89.69 -0.77 2.80 16 38 H 0.34 4.14 9.04 -89.69 -0.81 3.33 16 39 H 0.42 7.40 6.81 -92.71 -0.63 6.76 16 40 H 0.41 11.38 8.07 -92.71 -0.75 10.63 16 41 H 0.07 2.71 7.58 -2.39 -0.02 2.69 16 42 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.06 2.49 7.93 -2.38 -0.02 2.47 16 46 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 47 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 48 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 49 H 0.08 2.51 8.14 -2.39 -0.02 2.50 16 50 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -67.63 398.31 -1.21 -68.83 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -2.00 Total: 29.06 kcal Atomic # 6 Polarization: 21.04 SS G_CDS: 5.84 Total: 26.87 kcal Atomic # 7 Polarization: -129.63 SS G_CDS: -6.97 Total: -136.60 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -0.10 Total: -35.08 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.63 -1.21 -68.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326547708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.534 kcal (2) G-P(sol) polarization free energy of solvation -67.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds