Wall clock time and date at job start Tue Mar 31 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47497 * 265.00833 * 9 8 7 11 11 O 1.21276 * 119.99988 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00062 * 179.97438 * 10 9 8 13 13 S 1.65599 * 119.99877 * 179.97438 * 12 10 9 14 14 O 1.42104 * 104.27412 * 181.06989 * 13 12 10 15 15 O 1.42094 * 104.27872 * 308.93075 * 13 12 10 16 16 C 1.81407 * 104.44644 * 65.00422 * 13 12 10 17 17 C 1.53005 * 109.46760 * 179.97438 * 16 13 12 18 18 C 1.50697 * 109.46649 * 180.02562 * 17 16 13 19 19 H 1.08001 * 120.00678 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99800 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99943 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99889 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46944 * 60.00197 * 22 20 18 24 24 H 1.48506 * 109.46918 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47320 * 300.00213 * 22 20 18 26 26 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 27 27 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 29 29 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 30 30 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 31 31 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 34 34 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 35 35 H 0.96996 * 119.99860 * 359.97438 * 12 10 9 36 36 H 1.08995 * 109.46700 * 299.99680 * 16 13 12 37 37 H 1.08997 * 109.46893 * 59.99691 * 16 13 12 38 38 H 1.09003 * 109.46765 * 299.99611 * 17 16 13 39 39 H 1.08993 * 109.47174 * 60.00055 * 17 16 13 40 40 H 0.97002 * 120.00005 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4238 -0.4671 -1.4154 11 8 3.9256 0.1486 -2.3338 12 7 5.1295 -1.5889 -1.6603 13 16 5.3158 -2.1270 -3.2153 14 8 6.0768 -3.3199 -3.0845 15 8 3.9945 -2.1544 -3.7374 16 6 6.2945 -0.8334 -4.0276 17 6 6.5373 -1.2191 -5.4882 18 6 7.3508 -0.1449 -6.1627 19 1 7.6632 0.7261 -5.6057 20 6 7.6965 -0.2738 -7.4913 21 7 7.3167 -1.3346 -8.1696 22 14 8.7044 1.0581 -8.3276 23 1 10.0074 1.2041 -7.6304 24 1 8.9401 0.6837 -9.7453 25 1 7.9664 2.3456 -8.2723 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.2128 2.3203 -0.0010 30 1 1.3339 4.5114 0.0026 31 1 3.7920 4.6381 -0.0024 32 1 5.1344 2.5754 -0.0023 33 1 5.2326 0.2265 0.4336 34 1 3.7469 -0.7414 0.5899 35 1 5.5282 -2.0811 -0.9257 36 1 5.7531 0.1116 -3.9861 37 1 7.2513 -0.7269 -3.5164 38 1 7.0788 -2.1642 -5.5292 39 1 5.5807 -1.3260 -5.9995 40 1 7.5595 -1.4251 -9.1043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181271962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:41 Heat of formation + Delta-G solvation = -128.693839 kcal Electronic energy + Delta-G solvation = -25602.423696 eV Core-core repulsion = 21702.786493 eV Total energy + Delta-G solvation = -3899.637203 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.71995 -39.57872 -37.53838 -36.64196 -35.55693 -34.34442 -33.86091 -33.13383 -31.15137 -30.31212 -28.31484 -27.26094 -25.59181 -22.84062 -22.32094 -21.63533 -21.04400 -19.30010 -18.26645 -17.76616 -17.44895 -16.64804 -16.44439 -15.89239 -15.85911 -15.67732 -15.07309 -14.89347 -14.67713 -14.54164 -14.33661 -13.87868 -13.45075 -13.36176 -12.71571 -12.52669 -12.44958 -12.30072 -12.16727 -11.76705 -11.67142 -11.56581 -11.55511 -11.30620 -11.06492 -11.03845 -10.96871 -10.77642 -10.39227 -10.34747 -10.18362 -9.67995 -9.16180 -9.04823 -8.47144 -8.32229 -6.09566 -4.14943 0.55157 1.11675 1.29149 2.21374 2.81879 3.08628 3.30062 3.34383 3.36649 3.56733 4.09756 4.36745 4.39692 4.43434 4.56643 4.70564 4.75694 4.88232 4.96452 5.00512 5.05056 5.11093 5.24331 5.25621 5.29803 5.33343 5.51347 5.63799 5.76610 5.79939 6.11437 6.21289 6.34776 6.49752 6.58309 6.72708 7.18898 7.31409 7.38401 7.59425 7.83304 8.19673 8.87710 9.49312 11.01583 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.003391 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.981168 B = 8256.003896 C = 9395.254443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.145 3.855 4 C -0.209 4.209 5 C -0.078 4.078 6 C -0.157 4.157 7 C -0.067 4.067 8 C -0.107 4.107 9 C -0.094 4.094 10 C 0.535 3.465 11 O -0.480 6.480 12 N -1.060 6.060 13 S 2.566 3.434 14 O -0.957 6.957 15 O -0.938 6.938 16 C -0.576 4.576 17 C 0.030 3.970 18 C -0.519 4.519 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.891 5.891 22 Si 0.901 3.099 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.428 0.572 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.034 0.966 39 H 0.036 0.964 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.747 6.241 23.074 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.099 3.901 4 C -0.228 4.228 5 C -0.096 4.096 6 C -0.175 4.175 7 C -0.085 4.085 8 C -0.108 4.108 9 C -0.135 4.135 10 C 0.321 3.679 11 O -0.350 6.350 12 N -0.822 5.822 13 S 2.666 3.334 14 O -0.947 6.947 15 O -0.929 6.929 16 C -0.710 4.710 17 C -0.009 4.009 18 C -0.559 4.559 19 H 0.080 0.920 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.729 3.271 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.200 1.200 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.073 0.927 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.262 0.738 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.445 5.578 21.921 24.914 hybrid contribution 0.771 1.089 -0.108 1.338 sum -9.674 6.666 21.813 24.776 Atomic orbital electron populations 1.23069 0.78222 1.04117 1.01289 1.86060 1.21535 1.26773 1.88312 1.18787 0.91648 0.84413 0.95208 1.21190 1.00000 0.92329 1.09233 1.20945 0.94757 0.96904 0.97003 1.21015 0.93908 0.98372 1.04212 1.20884 0.99996 0.90949 0.96687 1.18602 0.90258 0.94511 1.07456 1.20588 1.02043 0.96872 0.93993 1.20536 0.75810 0.78852 0.92737 1.90912 1.43655 1.54426 1.46041 1.55410 1.60812 1.35245 1.30715 1.06672 0.76436 0.77042 0.73272 1.93584 1.73328 1.43518 1.84291 1.93594 1.35805 1.86628 1.76829 1.30338 1.12529 1.16076 1.12103 1.18982 0.98987 0.98650 0.84322 1.20945 1.33992 1.05386 0.95547 0.92022 1.25062 0.96088 0.95980 0.97320 1.69945 1.45519 1.27745 1.09682 0.86508 0.80430 0.81797 0.78412 1.20067 1.21068 1.20038 0.92415 0.88150 0.92747 0.85450 0.85837 0.85736 0.85174 0.87016 0.86848 0.73754 0.85092 0.86087 0.94776 0.94621 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -3.74 9.63 -19.42 -0.19 -3.92 16 3 C 0.15 1.75 6.66 -39.22 -0.26 1.49 16 4 C -0.21 -2.17 9.04 -39.43 -0.36 -2.53 16 5 C -0.08 -0.74 10.04 -39.60 -0.40 -1.14 16 6 C -0.16 -1.52 10.04 -39.56 -0.40 -1.91 16 7 C -0.07 -0.69 9.68 -39.61 -0.38 -1.07 16 8 C -0.11 -1.24 4.39 -104.48 -0.46 -1.70 16 9 C -0.09 -0.92 5.55 -29.04 -0.16 -1.08 16 10 C 0.53 7.58 7.56 -10.98 -0.08 7.49 16 11 O -0.48 -8.97 14.14 -11.57 -0.16 -9.14 16 12 N -1.06 -14.00 5.60 31.22 0.17 -13.83 16 13 S 2.57 48.39 5.11 -107.50 -0.55 47.84 16 14 O -0.96 -19.44 18.08 -57.54 -1.04 -20.48 16 15 O -0.94 -21.41 17.04 -64.79 -1.10 -22.51 16 16 C -0.58 -11.77 5.82 37.16 0.22 -11.55 16 17 C 0.03 0.79 4.98 -27.88 -0.14 0.65 16 18 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 19 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 22 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 27 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.13 1.04 6.30 -52.49 -0.33 0.71 16 30 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 31 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.11 0.68 8.05 -51.93 -0.42 0.26 16 34 H 0.11 0.92 7.69 -51.93 -0.40 0.53 16 35 H 0.43 3.68 8.79 -34.47 -0.30 3.38 16 36 H 0.13 2.65 7.19 -51.93 -0.37 2.28 16 37 H 0.12 2.11 8.14 -51.93 -0.42 1.69 16 38 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 358.03 15.07 5.40 5.40 Total: -1.00 -39.37 358.03 -8.72 -48.09 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.12 Total: 1.77 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -1.84 Total: -23.60 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.91 Total: -40.01 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -2.49 Total: -56.05 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 48.39 SS G_CDS: -0.55 Total: 47.84 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -39.37 -8.72 -48.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181271962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.604 kcal (2) G-P(sol) polarization free energy of solvation -39.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds