Wall clock time and date at job start Tue Mar 31 2020 05:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46999 * 300.00221 * 3 2 1 6 6 H 1.48500 * 109.46805 * 60.00305 * 3 2 1 7 7 C 1.38807 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00141 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00164 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.84940 * 23.81158 * 10 9 7 12 12 C 1.53787 * 113.61073 * 155.00545 * 10 9 7 13 13 C 1.53784 * 87.07923 * 140.06858 * 12 10 9 14 14 H 1.09002 * 113.61478 * 89.11632 * 13 12 10 15 15 N 1.46497 * 113.61569 * 220.01663 * 13 12 10 16 16 C 1.34769 * 120.00274 * 204.99925 * 15 13 12 17 17 O 1.21513 * 119.99764 * 0.02562 * 16 15 13 18 18 C 1.48163 * 120.00291 * 179.97438 * 16 15 13 19 19 C 1.39945 * 120.88717 * 0.02562 * 18 16 15 20 20 C 1.38054 * 119.13490 * 180.02562 * 19 18 16 21 21 N 1.31842 * 120.98341 * 359.97438 * 20 19 18 22 22 C 1.32238 * 121.97278 * 359.97438 * 21 20 19 23 23 N 1.39830 * 119.62919 * 180.02562 * 22 21 20 24 24 C 1.35847 * 126.10084 * 0.02562 * 23 22 21 25 25 C 1.35281 * 107.61207 * 180.02562 * 24 23 22 26 26 C 1.39948 * 107.97215 * 359.97438 * 25 24 23 27 27 N 1.30823 * 108.36755 * 359.71893 * 26 25 24 28 28 C 1.38918 * 120.74491 * 359.72466 * 22 21 20 29 29 C 1.53779 * 87.08045 * 334.56667 * 13 12 10 30 30 H 0.96992 * 120.00637 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00128 * 0.02562 * 9 7 2 32 32 H 1.09004 * 113.61202 * 254.61611 * 12 10 9 33 33 H 1.08994 * 113.61447 * 25.52042 * 12 10 9 34 34 H 0.97009 * 119.99534 * 24.99936 * 15 13 12 35 35 H 1.07998 * 120.43351 * 0.02562 * 19 18 16 36 36 H 1.08004 * 119.51017 * 180.02562 * 20 19 18 37 37 H 1.07997 * 126.19178 * 0.02562 * 24 23 22 38 38 H 1.08000 * 126.01306 * 179.97438 * 25 24 23 39 39 H 1.07995 * 125.81881 * 180.02562 * 26 25 24 40 40 H 1.08000 * 120.52456 * 180.28661 * 28 22 21 41 41 H 1.09006 * 113.61307 * 270.88660 * 29 13 12 42 42 H 1.08999 * 113.69146 * 139.99146 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 2.0584 -3.6567 -0.0005 11 1 3.0658 -3.5637 0.4050 12 6 1.2604 -4.8288 0.5949 13 6 1.8501 -5.6981 -0.5283 14 1 2.8007 -6.1632 -0.2670 15 7 0.8910 -6.6447 -1.1028 16 6 1.3301 -7.7723 -1.6962 17 8 2.5215 -8.0039 -1.7543 18 6 0.3601 -8.7300 -2.2767 19 6 -1.0161 -8.4821 -2.2197 20 6 -1.8877 -9.3994 -2.7718 21 7 -1.4415 -10.4979 -3.3483 22 6 -0.1504 -10.7730 -3.4262 23 7 0.2688 -11.9526 -4.0492 24 6 -0.5370 -12.8915 -4.6101 25 6 0.2563 -13.8710 -5.1014 26 6 1.5857 -13.5240 -4.8356 27 7 1.5949 -12.3739 -4.2121 28 6 0.7946 -9.9003 -2.9015 29 6 2.0015 -4.4032 -1.3438 30 1 -0.4851 0.8399 0.0004 31 1 0.3558 -2.3881 -0.0005 32 1 1.5909 -5.1202 1.5919 33 1 0.1801 -4.7009 0.5265 34 1 -0.0601 -6.4599 -1.0560 35 1 -1.3913 -7.5850 -1.7500 36 1 -2.9509 -9.2139 -2.7316 37 1 -1.6156 -12.8614 -4.6555 38 1 -0.0777 -14.7637 -5.6094 39 1 2.4561 -14.1041 -5.1042 40 1 1.8484 -10.1262 -2.9712 41 1 1.1237 -4.1589 -1.9422 42 1 2.9298 -4.3497 -1.9126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022693521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:04 Heat of formation + Delta-G solvation = 129.257005 kcal Electronic energy + Delta-G solvation = -25662.763611 eV Core-core repulsion = 21839.286641 eV Total energy + Delta-G solvation = -3823.476970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.144 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.95818 -40.76230 -39.57221 -37.99235 -34.50630 -33.97133 -33.16537 -32.55134 -30.76680 -29.95928 -29.72716 -25.80517 -25.21109 -24.56629 -24.14266 -22.66136 -21.71218 -21.15467 -20.51313 -19.61770 -18.68093 -17.56187 -17.21194 -16.73934 -16.03793 -15.98791 -15.91938 -15.36877 -15.08311 -14.69267 -14.59511 -14.43865 -14.08101 -13.89059 -13.83818 -13.17469 -13.11428 -12.95927 -12.51252 -12.26365 -12.00379 -11.33093 -11.23360 -11.00210 -10.90564 -10.80420 -10.56518 -10.50770 -10.37278 -10.34490 -10.08883 -9.92642 -9.67590 -9.60271 -8.99487 -8.89908 -8.72744 -7.04305 -5.85308 -3.14371 0.07824 0.40187 1.58948 1.68415 2.37643 2.66919 2.90297 3.39067 3.42281 3.45586 3.47326 3.82318 4.04456 4.20034 4.43762 4.47501 4.54437 4.60263 4.65836 4.94076 5.02608 5.13207 5.18515 5.25489 5.27320 5.35984 5.41148 5.51717 5.57174 5.78987 5.84331 5.87597 6.02866 6.11395 6.17240 6.22341 6.35663 6.54103 6.62459 6.63239 6.92881 6.96706 7.39088 7.41202 7.65114 8.01355 8.33073 9.44782 10.00485 10.34982 11.37050 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.031207 B = 0.001897 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.013217 B =14759.447253 C =15181.573964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.709 5.709 10 C 0.169 3.831 11 H 0.081 0.919 12 C -0.158 4.158 13 C 0.116 3.884 14 H 0.113 0.887 15 N -0.701 5.701 16 C 0.555 3.445 17 O -0.526 6.526 18 C -0.059 4.059 19 C -0.156 4.156 20 C 0.134 3.866 21 N -0.495 5.495 22 C 0.366 3.634 23 N -0.327 5.327 24 C 0.079 3.921 25 C -0.265 4.265 26 C 0.064 3.936 27 N -0.281 5.281 28 C -0.108 4.108 29 C -0.176 4.176 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.400 0.600 35 H 0.150 0.850 36 H 0.176 0.824 37 H 0.183 0.817 38 H 0.157 0.843 39 H 0.194 0.806 40 H 0.161 0.839 41 H 0.080 0.920 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.894 -26.868 -7.162 28.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.347 5.347 10 C 0.056 3.944 11 H 0.099 0.901 12 C -0.198 4.198 13 C 0.012 3.988 14 H 0.130 0.870 15 N -0.351 5.351 16 C 0.340 3.660 17 O -0.403 6.403 18 C -0.070 4.070 19 C -0.177 4.177 20 C -0.024 4.024 21 N -0.209 5.209 22 C 0.139 3.861 23 N -0.105 5.105 24 C -0.062 4.062 25 C -0.294 4.294 26 C -0.124 4.124 27 N -0.099 5.099 28 C -0.132 4.132 29 C -0.219 4.219 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.236 0.764 35 H 0.167 0.833 36 H 0.193 0.807 37 H 0.200 0.800 38 H 0.175 0.825 39 H 0.211 0.789 40 H 0.179 0.821 41 H 0.099 0.901 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.798 -26.435 -6.957 27.598 hybrid contribution -0.466 0.867 -0.173 1.000 sum -4.263 -25.568 -7.130 26.884 Atomic orbital electron populations 1.69660 1.05154 1.25724 1.57510 1.24770 0.95550 0.97852 1.02676 0.86104 0.78872 0.83935 0.77199 1.20452 1.21830 1.21802 1.19364 0.91219 0.84105 1.42909 0.90879 1.42353 1.05677 0.99753 1.86944 1.21342 0.95565 0.84934 0.92523 0.90090 1.23883 1.01262 0.97206 0.97459 1.22619 0.93182 0.87265 0.95753 0.86953 1.45966 1.10871 1.20810 1.57501 1.18042 0.87800 0.81425 0.78732 1.90800 1.16081 1.75797 1.57596 1.20373 0.93988 0.94978 0.97694 1.22413 0.92642 1.01617 1.01008 1.22511 1.00706 0.87191 0.91969 1.66723 1.14144 1.21826 1.18198 1.17528 0.89164 0.85337 0.94055 1.45787 1.05317 1.15333 1.44090 1.22938 0.98719 0.88944 0.95648 1.21689 0.92453 1.03253 1.11960 1.24216 0.98725 0.93331 0.96175 1.77575 0.94870 1.14952 1.22497 1.21704 1.02155 0.92427 0.96867 1.24360 1.02050 0.94816 1.00649 0.93474 0.78091 0.91278 0.89873 0.76414 0.83261 0.80695 0.79958 0.82517 0.78883 0.82098 0.90111 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.36 13.06 55.49 0.72 -26.64 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -16.94 5.40 -52.64 -0.28 -17.23 16 10 C 0.17 3.15 4.48 -67.12 -0.30 2.85 16 11 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 12 C -0.16 -2.32 7.58 -25.91 -0.20 -2.52 16 13 C 0.12 1.64 4.24 -67.12 -0.28 1.35 16 14 H 0.11 1.67 7.47 -51.93 -0.39 1.28 16 15 N -0.70 -8.42 5.31 -53.86 -0.29 -8.70 16 16 C 0.55 7.48 7.80 -12.19 -0.10 7.39 16 17 O -0.53 -9.04 16.04 5.35 0.09 -8.95 16 18 C -0.06 -0.66 5.91 -104.68 -0.62 -1.27 16 19 C -0.16 -1.23 9.61 -39.01 -0.37 -1.60 16 20 C 0.13 0.99 11.17 -17.61 -0.20 0.80 16 21 N -0.50 -4.90 9.83 -12.34 -0.12 -5.02 16 22 C 0.37 4.23 7.55 -154.42 -1.17 3.06 16 23 N -0.33 -3.70 3.81 -12.12 -0.05 -3.75 16 24 C 0.08 0.68 11.10 -16.83 -0.19 0.50 16 25 C -0.27 -1.90 10.80 -40.00 -0.43 -2.34 16 26 C 0.06 0.53 12.02 -17.34 -0.21 0.32 16 27 N -0.28 -3.25 11.83 30.64 0.36 -2.89 16 28 C -0.11 -1.32 9.27 -38.82 -0.36 -1.68 16 29 C -0.18 -2.95 7.68 -25.92 -0.20 -3.15 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.39 9.66 7.92 -40.82 -0.32 9.33 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 34 H 0.40 3.70 6.87 -40.82 -0.28 3.42 16 35 H 0.15 0.76 6.53 -52.49 -0.34 0.42 16 36 H 0.18 0.67 8.06 -52.48 -0.42 0.24 16 37 H 0.18 1.17 8.05 -52.49 -0.42 0.75 16 38 H 0.16 0.67 8.06 -52.49 -0.42 0.24 16 39 H 0.19 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.16 2.18 7.37 -52.49 -0.39 1.79 16 41 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 365.96 15.07 5.51 5.51 Total: -1.00 -34.40 365.96 -9.01 -43.41 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -5.07 Total: 10.81 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -4.86 Total: -3.50 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: 0.35 Total: -64.23 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.40 -9.01 -43.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022693521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.667 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds