Wall clock time and date at job start Tue Mar 31 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00288 * 2 1 4 4 H 1.48497 * 109.46993 * 239.99678 * 3 2 1 5 5 H 1.48501 * 109.47260 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47389 * 119.99641 * 3 2 1 7 7 C 1.38810 * 119.99571 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99759 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00392 * 0.02562 * 7 2 1 10 10 C 1.47580 * 134.48923 * 359.97438 * 9 7 2 11 11 C 1.53950 * 86.11852 * 155.35971 * 10 9 7 12 12 C 1.47584 * 134.49583 * 179.97438 * 9 7 2 13 13 H 1.08999 * 113.87072 * 90.32661 * 12 9 7 14 14 C 1.52995 * 113.76661 * 318.94113 * 12 9 7 15 15 N 1.46501 * 109.47329 * 78.50831 * 14 12 9 16 16 C 1.34771 * 120.00110 * 180.02562 * 15 14 12 17 17 O 1.21581 * 120.00189 * 359.97438 * 16 15 14 18 18 C 1.47663 * 120.00114 * 179.97438 * 16 15 14 19 19 C 1.40236 * 120.50001 * 180.02562 * 18 16 15 20 20 C 1.38016 * 118.35640 * 179.72777 * 19 18 16 21 21 C 1.39152 * 119.25822 * 0.51389 * 20 19 18 22 22 N 1.39495 * 119.53080 * 179.74584 * 21 20 19 23 23 C 1.37230 * 126.49591 * 185.00170 * 22 21 20 24 24 C 1.34587 * 106.82577 * 180.15992 * 23 22 21 25 25 N 1.34178 * 108.22998 * 359.58744 * 24 23 22 26 26 C 1.30446 * 109.38880 * 0.26440 * 25 24 23 27 27 N 1.32440 * 120.93994 * 359.47130 * 21 20 19 28 28 C 1.31632 * 121.80306 * 0.25804 * 27 21 20 29 29 H 0.97002 * 119.99355 * 0.02562 * 1 2 3 30 30 H 1.08993 * 113.77331 * 41.05889 * 10 9 7 31 31 H 1.09003 * 113.87148 * 269.67004 * 10 9 7 32 32 H 1.08995 * 113.73968 * 269.26213 * 11 10 9 33 33 H 1.08996 * 113.84155 * 137.96150 * 11 10 9 34 34 H 1.09004 * 109.47745 * 318.50311 * 14 12 9 35 35 H 1.09005 * 109.47113 * 198.50627 * 14 12 9 36 36 H 0.96997 * 119.99529 * 359.97438 * 15 14 12 37 37 H 1.08002 * 120.81719 * 359.95162 * 19 18 16 38 38 H 1.08007 * 120.37141 * 180.25870 * 20 19 18 39 39 H 1.08008 * 126.59028 * 0.02562 * 23 22 21 40 40 H 1.08002 * 125.88804 * 179.85562 * 24 23 22 41 41 H 1.08008 * 125.72638 * 179.97438 * 26 25 24 42 42 H 1.08001 * 119.68601 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1034 -2.7573 0.0005 11 6 0.3468 -4.0829 -0.6398 12 6 1.7200 -3.8102 0.0005 13 1 1.8324 -4.2368 0.9973 14 6 2.9022 -4.1221 -0.9192 15 7 4.1495 -3.7190 -0.2650 16 6 5.3284 -3.8991 -0.8927 17 8 5.3569 -4.3965 -2.0018 18 6 6.5856 -3.4923 -0.2336 19 6 7.8181 -3.6743 -0.8774 20 6 8.9650 -3.2730 -0.2231 21 6 8.8633 -2.7155 1.0478 22 7 10.0194 -2.3127 1.7165 23 6 10.0954 -1.8383 3.0020 24 6 11.3918 -1.5672 3.2411 25 7 12.0948 -1.8737 2.1401 26 6 11.2854 -2.3211 1.2201 27 7 7.6840 -2.5568 1.6293 28 6 6.5650 -2.9205 1.0392 29 1 -0.4849 0.8401 -0.0004 30 1 -0.7169 -2.1390 -0.6546 31 1 -0.5290 -2.8732 0.9973 32 1 0.3589 -4.0620 -1.7295 33 1 -0.1585 -4.9607 -0.2372 34 1 2.7892 -3.5745 -1.8548 35 1 2.9295 -5.1921 -1.1256 36 1 4.1268 -3.3219 0.6197 37 1 7.8681 -4.1144 -1.8625 38 1 9.9312 -3.3941 -0.6905 39 1 9.2726 -1.7058 3.6890 40 1 11.7971 -1.1748 4.1621 41 1 11.5725 -2.6435 0.2301 42 1 5.6219 -2.7757 1.5452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038568528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:17 Heat of formation + Delta-G solvation = 134.696744 kcal Electronic energy + Delta-G solvation = -26514.025043 eV Core-core repulsion = 22690.783958 eV Total energy + Delta-G solvation = -3823.241085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.144 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.70422 -40.75252 -39.16578 -37.95579 -34.65595 -34.32806 -33.06238 -32.27385 -30.83507 -29.75549 -28.09122 -27.67291 -25.04923 -24.28928 -23.44385 -22.44002 -21.72204 -21.24136 -20.55572 -19.31835 -19.18761 -17.99991 -17.01418 -16.62457 -16.13035 -15.69355 -15.45667 -15.41695 -14.91038 -14.79030 -14.26330 -14.20766 -14.09275 -13.92242 -13.77033 -13.55667 -13.30601 -13.10027 -12.94762 -12.01698 -11.50862 -11.21150 -11.10430 -11.06157 -10.79835 -10.66297 -10.52970 -10.45883 -10.42878 -10.06908 -9.85229 -9.80479 -9.49268 -9.20881 -8.89576 -8.86736 -8.72729 -6.97760 -5.83971 -3.17085 -0.01823 0.71154 1.71318 2.03269 2.73699 2.82776 3.19686 3.33066 3.37969 3.39269 3.53996 3.75666 4.07750 4.27164 4.35052 4.38525 4.40954 4.65262 4.80902 5.02724 5.04183 5.09239 5.22355 5.30696 5.42733 5.52215 5.55615 5.66169 5.79568 5.81629 5.90223 5.96542 6.21709 6.31292 6.32012 6.52053 6.57010 6.70460 6.71316 7.16665 7.26727 7.32755 7.51708 7.59726 7.60996 7.90725 8.24091 8.95995 9.63456 10.51109 11.32484 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013189 B = 0.003065 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.545106 B = 9134.096430 C =10538.752249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.906 3.094 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.155 4.155 12 C 0.124 3.876 13 H 0.051 0.949 14 C 0.122 3.878 15 N -0.704 5.704 16 C 0.560 3.440 17 O -0.541 6.541 18 C -0.188 4.188 19 C 0.010 3.990 20 C -0.188 4.188 21 C 0.361 3.639 22 N -0.412 5.412 23 C -0.022 4.022 24 C -0.031 4.031 25 N -0.478 5.478 26 C 0.194 3.806 27 N -0.498 5.498 28 C 0.174 3.826 29 H 0.255 0.745 30 H 0.074 0.926 31 H 0.027 0.973 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.402 0.598 37 H 0.160 0.840 38 H 0.150 0.850 39 H 0.184 0.816 40 H 0.177 0.823 41 H 0.213 0.787 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.407 -9.188 2.506 18.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.736 3.264 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.329 5.329 10 C 0.033 3.967 11 C -0.194 4.194 12 C 0.017 3.983 13 H 0.068 0.932 14 C -0.002 4.002 15 N -0.354 5.354 16 C 0.345 3.655 17 O -0.420 6.420 18 C -0.194 4.194 19 C -0.016 4.016 20 C -0.210 4.210 21 C 0.133 3.867 22 N -0.095 5.095 23 C -0.151 4.151 24 C -0.176 4.176 25 N -0.195 5.195 26 C -0.088 4.088 27 N -0.210 5.210 28 C 0.014 3.986 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.237 0.763 37 H 0.178 0.822 38 H 0.168 0.832 39 H 0.201 0.799 40 H 0.195 0.805 41 H 0.229 0.771 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 16.174 -8.713 2.469 18.537 hybrid contribution -0.425 0.883 -0.035 0.981 sum 15.749 -7.830 2.434 17.755 Atomic orbital electron populations 1.69802 1.04968 1.25485 1.56169 1.24747 0.95603 0.97397 1.02338 0.86310 0.78632 0.83558 0.77927 1.21154 1.21446 1.21167 1.18840 0.90005 0.81931 1.44334 0.90556 1.46069 1.02337 0.98472 1.86011 1.22200 0.87891 0.89601 0.96961 1.23772 0.95985 0.99036 1.00624 1.22521 0.92337 0.87795 0.95668 0.93218 1.21868 0.81779 0.98994 0.97528 1.45910 1.06073 1.62203 1.21223 1.17798 0.83134 0.79129 0.85425 1.90775 1.87193 1.44823 1.19204 1.21167 0.95606 1.05540 0.97126 1.21615 0.89534 0.90928 0.99537 1.21522 1.01095 1.04069 0.94308 1.18367 0.85570 0.93447 0.89304 1.43145 1.06054 1.47800 1.12490 1.23034 1.00593 1.04936 0.86528 1.22430 0.89991 1.06505 0.98632 1.70332 1.32485 1.15668 1.00971 1.25389 0.77761 1.04394 1.01212 1.67013 0.97130 1.19841 1.36987 1.22910 0.95540 0.89488 0.90653 0.93539 0.90787 0.95507 0.90449 0.92722 0.90550 0.91746 0.76282 0.82220 0.83243 0.79861 0.80548 0.77056 0.80916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.23 11.38 55.49 0.63 -25.59 16 2 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 3 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.22 -5.75 10.51 -15.06 -0.16 -5.90 16 8 H 0.08 1.86 7.80 -52.49 -0.41 1.45 16 9 N -0.60 -13.92 3.57 -170.73 -0.61 -14.54 16 10 C 0.16 3.48 7.51 -2.97 -0.02 3.45 16 11 C -0.16 -2.65 7.86 -25.80 -0.20 -2.86 16 12 C 0.12 2.21 4.33 -66.86 -0.29 1.92 16 13 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 14 C 0.12 2.01 5.54 -4.04 -0.02 1.99 16 15 N -0.70 -10.58 5.48 -61.31 -0.34 -10.92 16 16 C 0.56 8.41 7.77 -12.41 -0.10 8.31 16 17 O -0.54 -9.64 16.41 5.29 0.09 -9.55 16 18 C -0.19 -2.31 5.89 -104.81 -0.62 -2.92 16 19 C 0.01 0.11 9.70 -38.91 -0.38 -0.27 16 20 C -0.19 -1.65 9.48 -39.32 -0.37 -2.02 16 21 C 0.36 3.96 7.49 -154.50 -1.16 2.80 16 22 N -0.41 -4.37 2.98 -63.80 -0.19 -4.56 16 23 C -0.02 -0.22 11.16 -16.43 -0.18 -0.41 16 24 C -0.03 -0.32 11.85 -17.82 -0.21 -0.53 16 25 N -0.48 -5.46 11.24 -14.45 -0.16 -5.62 16 26 C 0.19 1.83 11.89 -89.55 -1.06 0.77 16 27 N -0.50 -6.08 9.87 -11.99 -0.12 -6.20 16 28 C 0.17 2.03 10.71 -17.15 -0.18 1.85 16 29 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.07 1.82 7.15 -51.93 -0.37 1.45 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.40 5.56 6.53 -40.82 -0.27 5.30 16 37 H 0.16 1.45 7.73 -52.49 -0.41 1.04 16 38 H 0.15 0.79 6.75 -52.48 -0.35 0.44 16 39 H 0.18 1.68 8.06 -52.48 -0.42 1.25 16 40 H 0.18 1.33 8.06 -52.49 -0.42 0.90 16 41 H 0.21 1.13 7.05 -52.48 -0.37 0.76 16 42 H 0.17 1.79 6.41 -52.49 -0.34 1.45 16 LS Contribution 361.66 15.07 5.45 5.45 Total: -1.00 -33.64 361.66 -10.36 -44.00 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.03 Total: 5.02 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -5.06 Total: 5.97 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -0.79 Total: -67.42 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.64 -10.36 -44.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038568528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.694 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds