Wall clock time and date at job start Tue Mar 31 2020 05:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86806 * 119.99740 * 2 1 4 4 H 1.48497 * 109.46694 * 274.97573 * 3 2 1 5 5 H 1.48494 * 109.47135 * 34.97560 * 3 2 1 6 6 H 1.48501 * 109.46932 * 154.97790 * 3 2 1 7 7 C 1.38807 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99928 * 186.72563 * 7 2 1 9 9 N 1.36935 * 120.00043 * 6.73494 * 7 2 1 10 10 C 1.47062 * 136.06113 * 356.10555 * 9 7 2 11 11 C 1.53496 * 87.98833 * 152.91187 * 10 9 7 12 12 C 1.47068 * 136.05554 * 176.15360 * 9 7 2 13 13 H 1.09001 * 113.47108 * 92.24683 * 12 9 7 14 14 C 1.53001 * 113.46998 * 321.86637 * 12 9 7 15 15 N 1.46497 * 109.47058 * 74.50544 * 14 12 9 16 16 C 1.34778 * 119.99931 * 180.02562 * 15 14 12 17 17 O 1.21556 * 119.99980 * 359.97438 * 16 15 14 18 18 C 1.47856 * 120.00033 * 179.97438 * 16 15 14 19 19 C 1.39618 * 120.11481 * 359.72001 * 18 16 15 20 20 C 1.37972 * 119.98619 * 179.74181 * 19 18 16 21 21 C 1.38268 * 120.21734 * 0.55833 * 20 19 18 22 22 C 1.38903 * 120.22438 * 359.69519 * 21 20 19 23 23 N 1.40274 * 119.99523 * 179.97438 * 22 21 20 24 24 C 1.36114 * 125.93759 * 359.74176 * 23 22 21 25 25 C 1.35374 * 106.04837 * 179.84250 * 24 23 22 26 26 N 1.33775 * 106.53525 * 0.40946 * 25 24 23 27 27 N 1.28605 * 109.06051 * 359.73225 * 26 25 24 28 28 C 1.38584 * 120.01379 * 0.02562 * 22 21 20 29 29 H 0.96989 * 119.99945 * 0.02562 * 1 2 3 30 30 H 1.08998 * 113.46798 * 267.69932 * 10 9 7 31 31 H 1.09010 * 113.46639 * 38.12919 * 10 9 7 32 32 H 1.09003 * 114.20727 * 272.47840 * 11 10 9 33 33 H 1.08997 * 114.20223 * 139.65707 * 11 10 9 34 34 H 1.09005 * 109.46795 * 314.50554 * 14 12 9 35 35 H 1.08998 * 109.47157 * 194.50966 * 14 12 9 36 36 H 0.96994 * 119.99990 * 359.97438 * 15 14 12 37 37 H 1.08007 * 120.00433 * 0.02562 * 19 18 16 38 38 H 1.08000 * 119.89494 * 180.25219 * 20 19 18 39 39 H 1.07993 * 119.88726 * 179.71576 * 21 20 19 40 40 H 1.07992 * 126.97550 * 359.95845 * 24 23 22 41 41 H 1.07995 * 126.73114 * 180.13645 * 25 24 23 42 42 H 1.08004 * 120.10514 * 179.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3925 2.1071 -1.3948 5 1 1.5042 2.6200 0.8025 6 1 3.5964 1.4122 0.5922 7 6 2.0103 -1.2021 0.0005 8 1 3.0848 -1.2052 0.1101 9 7 1.3327 -2.3840 -0.1380 10 6 -0.0769 -2.7912 -0.2363 11 6 0.3892 -4.0182 -1.0320 12 6 1.6946 -3.8048 -0.2532 13 1 1.7200 -4.3253 0.7042 14 6 2.9510 -4.0476 -1.0918 15 7 4.1350 -3.6595 -0.3212 16 6 5.3627 -3.7863 -0.8626 17 8 5.4877 -4.2230 -1.9901 18 6 6.5576 -3.3941 -0.0851 19 6 6.4165 -2.8867 1.2080 20 6 7.5337 -2.5265 1.9331 21 6 8.7941 -2.6554 1.3794 22 6 8.9445 -3.1542 0.0918 23 7 10.2254 -3.2825 -0.4654 24 6 11.3976 -2.9521 0.1423 25 6 12.3753 -3.2403 -0.7487 26 7 11.7668 -3.7154 -1.8412 27 7 10.4962 -3.7280 -1.6423 28 6 7.8292 -3.5243 -0.6429 29 1 -0.4849 0.8400 -0.0004 30 1 -0.5244 -3.0419 0.7255 31 1 -0.6882 -2.1022 -0.8193 32 1 0.4761 -3.8483 -2.1052 33 1 -0.1357 -4.9398 -0.7805 34 1 2.8998 -3.4524 -2.0037 35 1 3.0164 -5.1043 -1.3509 36 1 4.0352 -3.3106 0.5783 37 1 5.4333 -2.7804 1.6422 38 1 7.4231 -2.1380 2.9347 39 1 9.6645 -2.3676 1.9501 40 1 11.5226 -2.5446 1.1345 41 1 13.4377 -3.1082 -0.6070 42 1 7.9444 -3.9119 -1.6444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039081021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:32 Heat of formation + Delta-G solvation = 163.354181 kcal Electronic energy + Delta-G solvation = -26612.242203 eV Core-core repulsion = 22790.243798 eV Total energy + Delta-G solvation = -3821.998406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.71736 -40.33993 -38.85827 -38.01127 -34.99357 -34.20171 -32.31831 -32.04675 -31.11235 -30.35603 -28.16262 -27.69359 -24.73753 -24.41459 -23.55051 -22.78972 -21.84906 -21.56466 -20.43162 -19.47933 -18.90200 -17.14519 -16.79052 -16.77711 -16.44452 -16.11141 -15.42419 -15.34371 -14.98670 -14.70596 -14.54742 -14.17243 -14.13005 -13.79510 -13.45618 -13.26707 -12.92091 -12.41275 -12.23274 -11.99378 -11.68583 -11.58604 -11.31282 -11.28659 -11.23426 -11.06682 -10.83544 -10.64102 -10.12413 -9.90109 -9.84834 -9.79870 -9.48080 -9.34732 -9.02186 -8.84264 -8.68583 -6.99313 -5.85981 -3.18000 0.16043 0.60705 1.59221 1.88984 2.24416 2.76329 3.27279 3.31507 3.36878 3.39663 3.59917 3.97903 4.17962 4.33896 4.36059 4.59231 4.65042 4.68853 4.78737 4.86933 4.99874 5.13146 5.22719 5.31221 5.45927 5.49461 5.61460 5.69478 5.82755 5.83676 5.87581 5.89457 6.02483 6.11165 6.26009 6.33266 6.48355 6.52726 6.61875 6.75175 7.14018 7.32971 7.49374 7.70877 7.88913 8.14007 8.35066 8.93632 9.61788 10.54516 11.31430 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015417 B = 0.002958 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.795021 B = 9462.808336 C =10480.556082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.217 4.217 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.150 3.850 11 C -0.160 4.160 12 C 0.127 3.873 13 H 0.049 0.951 14 C 0.120 3.880 15 N -0.703 5.703 16 C 0.552 3.448 17 O -0.538 6.538 18 C -0.105 4.105 19 C -0.073 4.073 20 C -0.102 4.102 21 C -0.097 4.097 22 C 0.107 3.893 23 N -0.239 5.239 24 C -0.051 4.051 25 C -0.046 4.046 26 N -0.264 5.264 27 N -0.073 5.073 28 C -0.044 4.044 29 H 0.254 0.746 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.402 0.598 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.194 0.806 41 H 0.195 0.805 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.838 -7.009 7.277 19.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.201 4.201 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.345 4.345 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.025 3.975 11 C -0.199 4.199 12 C 0.019 3.981 13 H 0.066 0.934 14 C -0.004 4.004 15 N -0.354 5.354 16 C 0.337 3.663 17 O -0.416 6.416 18 C -0.109 4.109 19 C -0.092 4.092 20 C -0.121 4.121 21 C -0.118 4.118 22 C 0.016 3.984 23 N -0.026 5.026 24 C -0.199 4.199 25 C -0.201 4.201 26 N -0.131 5.131 27 N -0.052 5.052 28 C -0.065 4.065 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.238 0.762 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.211 0.789 41 H 0.212 0.788 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 16.403 -7.513 5.150 18.762 hybrid contribution 0.856 1.717 1.742 2.592 sum 17.259 -5.796 6.892 19.467 Atomic orbital electron populations 1.69834 1.05008 1.25385 1.55973 1.24775 0.95598 0.97429 1.02308 0.86195 0.78570 0.83803 0.77721 1.21498 1.21686 1.20661 1.18809 0.90382 0.81488 1.43775 0.90307 1.45716 1.02698 0.98943 1.85452 1.22055 0.88638 0.91169 0.95661 1.23648 0.96992 0.99203 1.00098 1.22430 0.91854 0.88186 0.95624 0.93387 1.21900 0.83366 0.99218 0.95891 1.45880 1.05556 1.64478 1.19440 1.18029 0.83140 0.78929 0.86154 1.90785 1.86417 1.45961 1.18487 1.19984 0.93567 1.02247 0.95061 1.21669 1.00200 0.94425 0.92926 1.21002 0.90726 0.99573 1.00783 1.21043 0.99371 0.98923 0.92485 1.17488 0.80857 1.05866 0.94184 1.44767 1.06182 1.40333 1.11358 1.23843 0.84354 1.08687 1.03003 1.23677 1.01377 1.04294 0.90774 1.75159 0.97983 1.16613 1.23306 1.78475 1.11028 1.16756 0.98913 1.21042 0.89169 0.95477 1.00765 0.93591 0.95691 0.90992 0.90114 0.92238 0.90711 0.91896 0.76168 0.84025 0.83623 0.84375 0.78876 0.78785 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.18 11.53 55.49 0.64 -25.54 16 2 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 3 Si 0.91 21.35 29.56 -169.99 -5.02 16.32 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.22 -5.57 10.54 -15.06 -0.16 -5.73 16 8 H 0.08 1.91 7.49 -52.48 -0.39 1.52 16 9 N -0.60 -14.01 3.65 -177.01 -0.65 -14.66 16 10 C 0.15 3.31 7.42 -8.52 -0.06 3.24 16 11 C -0.16 -2.79 8.03 -26.22 -0.21 -3.00 16 12 C 0.13 2.30 4.10 -72.40 -0.30 2.01 16 13 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 14 C 0.12 2.08 5.52 -4.04 -0.02 2.05 16 15 N -0.70 -11.24 5.32 -61.25 -0.33 -11.57 16 16 C 0.55 9.12 7.77 -12.32 -0.10 9.03 16 17 O -0.54 -10.68 16.35 5.32 0.09 -10.60 16 18 C -0.10 -1.40 5.87 -104.99 -0.62 -2.02 16 19 C -0.07 -0.76 9.54 -39.16 -0.37 -1.14 16 20 C -0.10 -0.82 10.02 -39.67 -0.40 -1.21 16 21 C -0.10 -0.78 9.45 -39.32 -0.37 -1.15 16 22 C 0.11 1.20 6.67 -83.62 -0.56 0.64 16 23 N -0.24 -2.79 3.56 -10.50 -0.04 -2.83 16 24 C -0.05 -0.42 10.91 -16.67 -0.18 -0.60 16 25 C -0.05 -0.41 12.05 -17.73 -0.21 -0.63 16 26 N -0.26 -3.57 12.39 30.24 0.37 -3.19 16 27 N -0.07 -1.06 12.41 60.35 0.75 -0.31 16 28 C -0.04 -0.59 9.16 -39.00 -0.36 -0.94 16 29 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.79 7.11 -51.92 -0.37 1.42 16 32 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.40 5.88 6.34 -40.82 -0.26 5.62 16 37 H 0.14 1.33 6.40 -52.48 -0.34 1.00 16 38 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.14 0.63 6.75 -52.49 -0.35 0.27 16 40 H 0.19 0.69 7.10 -52.49 -0.37 0.32 16 41 H 0.20 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.16 2.35 7.28 -52.48 -0.38 1.97 16 LS Contribution 360.38 15.07 5.43 5.43 Total: -1.00 -34.49 360.38 -7.75 -42.23 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.98 Total: 4.37 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -4.01 Total: 0.34 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.75 Total: -58.10 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.49 -7.75 -42.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039081021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.588 kcal (2) G-P(sol) polarization free energy of solvation -34.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds