Wall clock time and date at job start Tue Mar 31 2020 05:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 120.00226 * 2 1 4 4 O 1.21569 * 120.00122 * 184.85015 * 3 2 1 5 5 C 1.47688 * 119.99663 * 4.84336 * 3 2 1 6 6 C 1.39698 * 120.08470 * 320.60080 * 5 3 2 7 7 C 1.37738 * 119.92168 * 179.97438 * 6 5 3 8 8 C 1.39026 * 120.07883 * 359.97438 * 7 6 5 9 9 N 1.39935 * 119.91584 * 179.97438 * 8 7 6 10 10 C 1.36312 * 126.86112 * 180.02562 * 9 8 7 11 11 C 1.34963 * 106.77904 * 179.97438 * 10 9 8 12 12 N 1.33380 * 109.01694 * 359.97438 * 11 10 9 13 13 N 1.28769 * 109.92080 * 359.97438 * 12 11 10 14 14 C 1.39028 * 120.16158 * 0.26116 * 8 7 6 15 15 C 1.37747 * 120.07783 * 359.47840 * 14 8 7 16 16 C 1.46503 * 120.00111 * 180.02562 * 2 1 3 17 17 C 1.53944 * 113.74270 * 38.73453 * 16 2 1 18 18 N 1.47810 * 86.03648 * 222.08667 * 17 16 2 19 19 C 1.36936 * 134.45628 * 204.64798 * 18 17 16 20 20 H 1.08001 * 120.00238 * 179.87037 * 19 18 17 21 21 C 1.38813 * 119.99837 * 359.86535 * 19 18 17 22 22 N 1.31615 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99895 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47108 * 89.99872 * 23 21 19 25 25 H 1.48494 * 109.47153 * 209.99634 * 23 21 19 26 26 H 1.48498 * 109.47341 * 330.00121 * 23 21 19 27 27 C 1.47575 * 91.05187 * 24.55036 * 18 17 16 28 28 H 1.08996 * 109.47430 * 85.88727 * 1 2 3 29 29 H 1.09001 * 109.46488 * 205.88776 * 1 2 3 30 30 H 1.09002 * 109.46864 * 325.88400 * 1 2 3 31 31 H 1.08000 * 120.03598 * 359.95295 * 6 5 3 32 32 H 1.08002 * 119.96063 * 180.02562 * 7 6 5 33 33 H 1.07996 * 126.61573 * 359.71910 * 10 9 8 34 34 H 1.08005 * 125.49820 * 179.97438 * 11 10 9 35 35 H 1.07994 * 119.96171 * 179.72403 * 14 8 7 36 36 H 1.07993 * 120.03551 * 180.25811 * 15 14 8 37 37 H 1.08999 * 112.94137 * 170.33448 * 16 2 1 38 38 H 1.09000 * 113.76896 * 336.35647 * 17 16 2 39 39 H 1.08998 * 113.76411 * 107.74792 * 17 16 2 40 40 H 0.96998 * 120.00282 * 180.02562 * 22 21 19 41 41 H 1.08997 * 113.77138 * 221.15146 * 27 18 17 42 42 H 1.08997 * 113.77415 * 89.75385 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3514 1.1691 -0.0890 5 6 1.4044 2.4439 0.1080 6 6 0.1926 2.6138 -0.5659 7 6 -0.4899 3.8057 -0.4624 8 6 0.0256 4.8389 0.3120 9 7 -0.6703 6.0486 0.4143 10 6 -0.2981 7.1482 1.1287 11 6 -1.2592 8.0773 0.9428 12 7 -2.1988 7.5759 0.1398 13 7 -1.8897 6.3728 -0.1995 14 6 1.2338 4.6752 0.9801 15 6 1.9192 3.4841 0.8855 16 6 2.1975 -1.2687 -0.0006 17 6 1.5555 -2.3547 -0.8828 18 7 1.8611 -3.2880 0.2220 19 6 2.0640 -4.6396 0.3073 20 1 2.2810 -5.0938 1.2628 21 6 1.9907 -5.4258 -0.8344 22 7 1.7256 -4.8724 -1.9987 23 14 2.2667 -7.2696 -0.7179 24 1 0.9704 -7.9494 -0.4674 25 1 2.8471 -7.7647 -1.9919 26 1 3.2020 -7.5606 0.3982 27 6 1.8622 -2.1786 1.1951 28 1 -0.3634 0.0737 -1.0250 29 1 -0.3632 -0.9246 0.4487 30 1 -0.3633 0.8508 0.5764 31 1 -0.2085 1.8116 -1.1675 32 1 -1.4271 3.9376 -0.9827 33 1 0.5920 7.2540 1.7310 34 1 -1.2664 9.0673 1.3745 35 1 1.6335 5.4815 1.5772 36 1 2.8555 3.3562 1.4082 37 1 3.2669 -1.1418 -0.1690 38 1 0.4887 -2.2090 -1.0525 39 1 2.1091 -2.5604 -1.7989 40 1 1.6740 -5.4218 -2.7964 41 1 2.6600 -2.2438 1.9349 42 1 0.8857 -1.9809 1.6372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044175921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:05 Heat of formation + Delta-G solvation = 175.819002 kcal Electronic energy + Delta-G solvation = -26417.247555 eV Core-core repulsion = 22595.789665 eV Total energy + Delta-G solvation = -3821.457890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.144 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.61813 -40.60274 -39.03523 -37.58963 -35.09035 -34.41931 -32.12650 -31.86712 -31.01992 -30.15490 -27.75724 -26.95243 -25.30270 -24.89886 -23.90424 -23.29635 -22.04088 -21.57951 -20.30017 -19.08840 -18.63569 -17.45945 -16.92831 -16.40924 -16.27610 -15.75979 -15.71786 -15.24497 -14.85601 -14.78221 -14.60510 -14.16631 -14.00667 -13.81615 -13.49288 -13.07901 -12.94013 -12.59438 -12.40678 -12.10431 -11.89238 -11.63630 -11.60834 -11.48625 -11.38220 -11.31515 -10.94799 -10.75583 -10.36269 -10.13620 -9.88009 -9.74694 -9.62516 -9.53563 -8.86927 -8.85356 -8.27951 -6.98482 -5.84732 -3.17984 -0.07587 0.82619 1.26068 1.66113 2.10240 2.67346 3.05530 3.35638 3.38804 3.41136 3.42783 3.90545 3.99824 4.29395 4.33428 4.42352 4.49301 4.57548 4.74955 4.78710 4.95411 5.10446 5.11334 5.21396 5.33831 5.42435 5.46838 5.52476 5.62247 5.63978 5.76310 5.83444 5.92418 5.99885 6.01829 6.08542 6.34468 6.42034 6.48998 6.64779 7.11454 7.23338 7.44058 7.59183 7.67491 7.88946 8.22897 8.96166 9.62395 10.48015 11.32444 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.036788 B = 0.002130 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.929824 B =13141.367943 C =13529.455186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.590 5.590 3 C 0.552 3.448 4 O -0.535 6.535 5 C -0.116 4.116 6 C -0.071 4.071 7 C -0.113 4.113 8 C 0.150 3.850 9 N -0.317 5.317 10 C 0.023 3.977 11 C -0.073 4.073 12 N -0.232 5.232 13 N -0.061 5.061 14 C -0.133 4.133 15 C -0.044 4.044 16 C 0.089 3.911 17 C 0.157 3.843 18 N -0.606 5.606 19 C -0.224 4.224 20 H 0.082 0.918 21 C -0.006 4.006 22 N -0.920 5.920 23 Si 0.915 3.085 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.280 1.280 27 C 0.109 3.891 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.152 0.848 32 H 0.146 0.854 33 H 0.197 0.803 34 H 0.191 0.809 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.118 0.882 38 H 0.033 0.967 39 H 0.078 0.922 40 H 0.255 0.745 41 H 0.048 0.952 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.241 23.976 6.932 25.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.321 5.321 3 C 0.340 3.660 4 O -0.413 6.413 5 C -0.120 4.120 6 C -0.090 4.090 7 C -0.133 4.133 8 C 0.058 3.942 9 N -0.098 5.098 10 C -0.127 4.127 11 C -0.228 4.228 12 N -0.102 5.102 13 N -0.038 5.038 14 C -0.154 4.154 15 C -0.063 4.063 16 C -0.014 4.014 17 C 0.031 3.969 18 N -0.332 5.332 19 C -0.352 4.352 20 H 0.100 0.900 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.745 3.255 24 H -0.215 1.215 25 H -0.215 1.215 26 H -0.205 1.205 27 C -0.018 4.018 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.169 0.831 32 H 0.164 0.836 33 H 0.214 0.786 34 H 0.208 0.792 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.136 0.864 38 H 0.050 0.950 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.735 23.152 5.835 24.341 hybrid contribution 0.761 -0.664 0.734 1.248 sum -3.974 22.488 6.569 23.762 Atomic orbital electron populations 1.22159 0.79943 1.03730 1.01630 1.47981 1.06990 1.06089 1.71059 1.18230 0.87127 0.83422 0.77244 1.90796 1.13460 1.87111 1.49956 1.20232 0.95879 0.95554 1.00294 1.21692 0.92723 0.97185 0.97390 1.20888 1.01625 0.91649 0.99150 1.17748 0.92533 0.83595 1.00370 1.48048 1.17698 1.10532 1.33564 1.23607 1.02646 0.87097 0.99358 1.23288 0.92764 1.02631 1.04125 1.74371 1.23099 1.02599 1.10121 1.82158 0.95040 1.08949 1.17698 1.20785 0.93606 0.99240 1.01752 1.21046 0.99014 0.90355 0.95889 1.24158 0.98171 0.79395 0.99719 1.22676 0.96906 0.83360 0.93949 1.45698 1.81969 1.02218 1.03347 1.18988 1.41682 0.80137 0.94359 0.89996 1.24812 1.01817 0.98347 0.95342 1.69803 1.54432 1.34386 0.98063 0.86079 0.77790 0.84618 0.77022 1.21547 1.21541 1.20520 1.22973 0.98138 0.87258 0.93469 0.92018 0.89861 0.91111 0.83051 0.83616 0.78637 0.79212 0.84429 0.83651 0.86393 0.94952 0.90382 0.93478 0.93383 0.94629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.80 7.55 59.85 0.45 1.25 16 2 N -0.59 -8.95 3.09 -176.92 -0.55 -9.49 16 3 C 0.55 8.32 7.34 -12.40 -0.09 8.23 16 4 O -0.54 -9.98 16.39 5.30 0.09 -9.89 16 5 C -0.12 -1.30 5.23 -104.95 -0.55 -1.85 16 6 C -0.07 -0.67 7.55 -39.22 -0.30 -0.97 16 7 C -0.11 -1.02 9.66 -39.47 -0.38 -1.40 16 8 C 0.15 1.33 6.70 -83.57 -0.56 0.77 16 9 N -0.32 -2.92 3.85 -10.50 -0.04 -2.96 16 10 C 0.02 0.14 10.92 -16.72 -0.18 -0.04 16 11 C -0.07 -0.52 11.86 -18.04 -0.21 -0.73 16 12 N -0.23 -2.54 12.33 30.09 0.37 -2.17 16 13 N -0.06 -0.70 13.15 60.35 0.79 0.09 16 14 C -0.13 -0.98 9.46 -39.47 -0.37 -1.36 16 15 C -0.04 -0.41 9.62 -39.22 -0.38 -0.78 16 16 C 0.09 1.69 4.41 -70.15 -0.31 1.38 16 17 C 0.16 3.55 6.94 -2.84 -0.02 3.53 16 18 N -0.61 -15.15 3.70 -177.90 -0.66 -15.81 16 19 C -0.22 -6.17 10.70 -15.06 -0.16 -6.33 16 20 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 22 N -0.92 -26.76 11.39 55.49 0.63 -26.13 16 23 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.11 2.17 8.44 -2.97 -0.03 2.14 16 28 H 0.06 0.64 6.91 -51.93 -0.36 0.28 16 29 H 0.08 1.07 6.19 -51.93 -0.32 0.75 16 30 H 0.07 0.66 5.80 -51.93 -0.30 0.36 16 31 H 0.15 1.27 5.33 -52.49 -0.28 0.99 16 32 H 0.15 1.24 7.72 -52.49 -0.41 0.84 16 33 H 0.20 0.36 7.16 -52.49 -0.38 -0.02 16 34 H 0.19 0.64 8.06 -52.48 -0.42 0.21 16 35 H 0.14 0.58 6.82 -52.49 -0.36 0.22 16 36 H 0.15 1.26 8.05 -52.49 -0.42 0.84 16 37 H 0.12 2.45 7.20 -51.93 -0.37 2.08 16 38 H 0.03 0.71 6.74 -51.93 -0.35 0.36 16 39 H 0.08 2.00 7.17 -51.93 -0.37 1.63 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.04 0.66 6.90 -51.93 -0.36 0.30 16 LS Contribution 350.99 15.07 5.29 5.29 Total: -1.00 -34.86 350.99 -6.95 -41.81 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -4.67 Total: -1.10 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -3.18 Total: 3.57 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.55 Total: -56.46 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.86 -6.95 -41.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044175921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.627 kcal (2) G-P(sol) polarization free energy of solvation -34.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds