Wall clock time and date at job start Tue Mar 31 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47406 * 2 1 4 4 C 1.53008 * 109.47083 * 239.99726 * 2 1 3 5 5 N 1.46902 * 109.46622 * 65.00316 * 4 2 1 6 6 C 1.46906 * 110.99573 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46990 * 180.02562 * 6 5 4 8 8 C 1.35352 * 126.75222 * 94.70954 * 7 6 5 9 9 N 1.35309 * 106.17601 * 179.85115 * 8 7 6 10 10 C 1.46499 * 125.86946 * 180.12017 * 9 8 7 11 11 N 1.28716 * 108.26238 * 0.42181 * 9 8 7 12 12 N 1.28631 * 110.17997 * 359.73438 * 11 9 8 13 13 C 1.53008 * 109.47180 * 120.00178 * 2 1 3 14 14 N 1.46503 * 109.46700 * 294.99741 * 13 2 1 15 15 C 1.34781 * 119.99612 * 179.97438 * 14 13 2 16 16 O 1.21282 * 120.00032 * 0.02562 * 15 14 13 17 17 C 1.50694 * 119.99562 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.46877 * 179.97438 * 17 15 14 19 19 C 1.76195 * 100.00123 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00055 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00372 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99488 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00276 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47203 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47089 * 120.00682 * 23 21 19 26 26 H 1.48498 * 109.47138 * 240.00657 * 23 21 19 27 27 H 1.09007 * 109.47182 * 59.99862 * 1 2 3 28 28 H 1.08994 * 109.47490 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47025 * 300.00311 * 1 2 3 30 30 H 1.08990 * 109.46924 * 305.00455 * 4 2 1 31 31 H 1.09004 * 109.46978 * 185.00332 * 4 2 1 32 32 H 1.00896 * 111.00219 * 303.95583 * 5 4 2 33 33 H 1.09002 * 109.46991 * 299.99841 * 6 5 4 34 34 H 1.09000 * 109.47202 * 60.00133 * 6 5 4 35 35 H 1.08000 * 126.91442 * 0.02562 * 8 7 6 36 36 H 1.09001 * 109.47047 * 270.32835 * 10 9 8 37 37 H 1.08993 * 109.47448 * 30.32798 * 10 9 8 38 38 H 1.09006 * 109.47058 * 150.33172 * 10 9 8 39 39 H 1.09005 * 109.46614 * 54.99566 * 13 2 1 40 40 H 1.08993 * 109.46898 * 174.99917 * 13 2 1 41 41 H 0.96996 * 120.00352 * 0.02562 * 14 13 2 42 42 H 1.09001 * 109.47440 * 299.99998 * 17 15 14 43 43 H 1.09002 * 109.47186 * 60.00542 * 17 15 14 44 44 H 0.97004 * 119.99620 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 1.6513 0.0374 -2.4456 6 6 2.1257 -0.6266 -3.6672 7 6 1.7098 0.1792 -4.8708 8 6 2.4490 1.1115 -5.5161 9 7 1.6784 1.5675 -6.5306 10 6 2.0617 2.5904 -7.5068 11 7 0.5484 0.9527 -6.4866 12 7 0.5352 0.1180 -5.5081 13 6 2.0400 -0.7213 1.2493 14 7 1.6524 0.0354 2.4424 15 6 1.9956 -0.4136 3.6660 16 8 2.6255 -1.4438 3.7793 17 6 1.5964 0.3644 4.8933 18 16 2.1985 -0.4895 6.3712 19 6 1.6095 0.6061 7.6190 20 1 1.0575 1.4923 7.3428 21 6 1.8539 0.3298 8.9571 22 7 2.5262 -0.7506 9.2938 23 14 1.2287 1.4910 10.2800 24 1 0.5073 2.6228 9.6446 25 1 0.3044 0.7601 11.1837 26 1 2.3771 2.0129 11.0635 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6053 -1.7198 -1.2951 31 1 3.1263 -0.7996 -1.2056 32 1 0.6528 0.1794 -2.4753 33 1 3.2127 -0.7038 -3.6400 34 1 1.6920 -1.6246 -3.7301 35 1 3.4530 1.4260 -5.2723 36 1 1.7829 3.5746 -7.1302 37 1 3.1392 2.5545 -7.6667 38 1 1.5479 2.4034 -8.4498 39 1 1.6052 -1.7199 1.2951 40 1 3.1262 -0.7995 1.2056 41 1 1.1483 0.8590 2.3518 42 1 2.0310 1.3630 4.8478 43 1 0.5100 0.4425 4.9366 44 1 2.6973 -0.9436 10.2289 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753617773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:50 Heat of formation + Delta-G solvation = 54.505587 kcal Electronic energy + Delta-G solvation = -23676.995976 eV Core-core repulsion = 19985.721492 eV Total energy + Delta-G solvation = -3691.274483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.67271 -39.30695 -37.77111 -35.68745 -34.71913 -32.86546 -32.41069 -31.22119 -29.30774 -28.55675 -27.15404 -26.25662 -25.43559 -23.78704 -22.53558 -21.56708 -20.56905 -20.14965 -17.86258 -17.67368 -17.09738 -16.66117 -16.27407 -15.90752 -15.46861 -15.38059 -14.85097 -14.78584 -14.61433 -14.04037 -13.99690 -13.83418 -13.69221 -13.27001 -13.15855 -12.85390 -12.74836 -12.63995 -12.50186 -11.97305 -11.79837 -11.32414 -11.24890 -11.10353 -11.05482 -11.01039 -10.99524 -10.73637 -10.54372 -9.78724 -9.70433 -9.36369 -9.06090 -8.85606 -8.79505 -8.20701 -6.47746 -6.20162 -3.90289 1.14006 1.88080 2.04781 3.06468 3.14863 3.22811 3.29596 3.34400 3.66236 3.80924 4.00866 4.10223 4.22113 4.36349 4.40899 4.56985 4.63799 4.65899 4.67191 4.73883 5.00446 5.12439 5.15150 5.19550 5.24424 5.36994 5.40340 5.48049 5.57001 5.66819 5.67558 5.71312 5.78883 5.92709 6.02481 6.07345 6.08878 6.17188 6.54850 6.68808 6.95447 7.61674 7.76016 8.06777 8.37212 8.66351 9.25385 10.87364 Molecular weight = 327.15amu Principal moments of inertia in cm(-1) A = 0.036588 B = 0.001487 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.091948 B =18820.329978 C =19142.580815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 H 0.087 0.913 4 C 0.066 3.934 5 N -0.686 5.686 6 C 0.145 3.855 7 C -0.019 4.019 8 C -0.030 4.030 9 N -0.296 5.296 10 C 0.081 3.919 11 N -0.088 5.088 12 N -0.264 5.264 13 C 0.127 3.873 14 N -0.737 5.737 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.347 0.653 33 H 0.091 0.909 34 H 0.051 0.949 35 H 0.192 0.808 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.398 0.602 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 6.962 -33.994 34.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.120 4.120 3 H 0.105 0.895 4 C -0.063 4.063 5 N -0.319 5.319 6 C 0.015 3.985 7 C -0.158 4.158 8 C -0.182 4.182 9 N -0.090 5.090 10 C -0.060 4.060 11 N -0.067 5.067 12 N -0.132 5.132 13 C 0.002 3.998 14 N -0.392 5.392 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.166 0.834 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.209 0.791 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.366 5.407 -34.325 34.750 hybrid contribution -0.843 1.949 0.943 2.323 sum -0.477 7.356 -33.382 34.186 Atomic orbital electron populations 1.21896 0.94769 1.02255 1.02045 1.21357 0.96380 1.01004 0.93246 0.89498 1.21912 1.01113 0.94754 0.88570 1.60520 1.20661 1.49942 1.00747 1.20069 1.00583 0.93654 0.84234 1.21859 0.92064 1.01129 1.00720 1.23420 1.01110 1.00880 0.92754 1.47264 1.11003 1.28546 1.22150 1.22289 1.02929 0.89256 0.91574 1.78323 1.04389 1.06434 1.17579 1.75060 1.19988 1.14985 1.03155 1.21242 1.00032 0.95298 0.83203 1.45985 1.59555 1.28123 1.05522 1.20293 0.78707 0.85467 0.83828 1.90699 1.38491 1.23903 1.86231 1.23529 1.04774 1.03452 0.98652 1.85392 1.72887 1.32965 0.92203 1.22917 1.41417 1.11192 0.92792 0.90883 1.24990 0.94873 0.95790 0.97932 1.70032 1.37629 1.24593 1.18048 0.86118 0.78568 0.80149 0.80664 1.19626 1.20580 1.20576 0.92369 0.92439 0.92107 0.94393 0.90260 0.83399 0.89064 0.93077 0.79094 0.88934 0.88191 0.88010 0.91650 0.91539 0.76831 0.89248 0.89271 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.84 37.15 0.33 -0.88 16 2 C -0.10 -0.82 2.63 -90.62 -0.24 -1.06 16 3 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.07 0.48 5.14 -3.82 -0.02 0.46 16 5 N -0.69 -5.07 6.49 -115.05 -0.75 -5.81 16 6 C 0.15 0.99 6.25 -4.97 -0.03 0.96 16 7 C -0.02 -0.16 6.76 -82.78 -0.56 -0.72 16 8 C -0.03 -0.18 11.55 -17.05 -0.20 -0.38 16 9 N -0.30 -1.89 3.74 -68.06 -0.25 -2.15 16 10 C 0.08 0.10 11.39 59.85 0.68 0.78 16 11 N -0.09 -0.89 13.16 60.35 0.79 -0.09 16 12 N -0.26 -2.93 12.41 33.29 0.41 -2.51 16 13 C 0.13 1.44 5.07 -4.04 -0.02 1.42 16 14 N -0.74 -9.79 5.28 -60.29 -0.32 -10.11 16 15 C 0.53 9.98 7.85 -10.99 -0.09 9.89 16 16 O -0.52 -11.90 15.86 5.56 0.09 -11.81 16 17 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.53 -15.34 9.50 30.94 0.29 -15.04 16 20 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 23 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H 0.06 0.42 6.68 -51.92 -0.35 0.08 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.49 7.18 -51.93 -0.37 0.12 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.35 2.78 6.98 -39.29 -0.27 2.51 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.19 0.47 8.06 -52.49 -0.42 0.05 16 36 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 37 H 0.10 -0.13 8.14 -51.93 -0.42 -0.55 16 38 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.40 4.19 7.65 -40.82 -0.31 3.88 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 44 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 386.74 15.07 5.83 5.83 Total: -1.00 -38.08 386.74 -7.19 -45.26 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.77 Total: -0.20 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 0.28 Total: -5.45 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.62 Total: -46.22 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.08 -7.19 -45.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.770 kcal (2) G-P(sol) polarization free energy of solvation -38.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds