Wall clock time and date at job start Tue Mar 31 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 N 1.46905 * 109.46980 * 65.00539 * 4 2 1 6 6 C 1.46899 * 110.99760 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47024 * 179.97438 * 6 5 4 8 8 O 1.21296 * 120.00121 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00314 * 179.97438 * 7 6 5 10 10 C 1.37097 * 120.00244 * 179.97438 * 9 7 6 11 11 H 1.07998 * 119.99837 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00009 * 180.02562 * 10 9 7 13 13 N 1.31409 * 119.99853 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00127 * 180.02562 * 12 10 9 15 15 H 1.48508 * 109.46986 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47527 * 119.99590 * 14 12 10 17 17 H 1.48502 * 109.46979 * 240.00147 * 14 12 10 18 18 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 19 19 N 1.46492 * 109.47631 * 294.99736 * 18 2 1 20 20 C 1.34775 * 120.00395 * 180.02562 * 19 18 2 21 21 O 1.21286 * 120.00014 * 359.97438 * 20 19 18 22 22 C 1.50703 * 120.00117 * 180.02562 * 20 19 18 23 23 H 1.08994 * 110.49253 * 40.69848 * 22 20 19 24 24 C 1.54107 * 110.54828 * 277.99621 * 22 20 19 25 25 N 1.47382 * 103.70347 * 241.44648 * 24 22 20 26 26 C 1.33950 * 109.21198 * 359.88243 * 25 24 22 27 27 O 1.21583 * 123.04045 * 180.02562 * 26 25 24 28 28 N 1.33946 * 113.91518 * 0.07678 * 26 25 24 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 1.09000 * 109.46875 * 184.99989 * 4 2 1 33 33 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 34 34 H 1.00899 * 111.00107 * 56.04359 * 5 4 2 35 35 H 1.09005 * 109.46858 * 299.99223 * 6 5 4 36 36 H 1.08998 * 109.47864 * 59.99508 * 6 5 4 37 37 H 0.97000 * 119.99506 * 359.97438 * 9 7 6 38 38 H 0.97007 * 119.99717 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.47317 * 55.00458 * 18 2 1 40 40 H 1.09007 * 109.46669 * 175.00116 * 18 2 1 41 41 H 0.97000 * 119.99817 * 0.02562 * 19 18 2 42 42 H 1.09006 * 110.54650 * 0.02562 * 24 22 20 43 43 H 1.09001 * 110.54802 * 122.80577 * 24 22 20 44 44 H 0.97001 * 125.37710 * 179.97438 * 25 24 22 45 45 H 0.97001 * 125.40861 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6515 0.0374 -2.4456 6 6 2.1249 -0.6272 -3.6672 7 6 1.7080 0.1780 -4.8709 8 8 1.0780 1.2043 -4.7255 9 7 2.0350 -0.2423 -6.1090 10 6 1.6553 0.4900 -7.2041 11 1 1.0937 1.4033 -7.0746 12 6 1.9920 0.0564 -8.4805 13 7 2.6749 -1.0552 -8.6380 14 14 1.4753 1.0544 -9.9726 15 1 0.7223 2.2549 -9.5285 16 1 2.6821 1.4777 -10.7273 17 1 0.6099 0.2238 -10.8481 18 6 2.0399 -0.7212 1.2493 19 7 1.6524 0.0354 2.4424 20 6 1.9964 -0.4131 3.6659 21 8 2.6263 -1.4433 3.7793 22 6 1.5972 0.3650 4.8933 23 1 0.5811 0.7455 4.7901 24 6 2.5846 1.5209 5.1458 25 7 3.1572 1.2085 6.4674 26 6 2.6122 0.0745 6.9271 27 8 2.9061 -0.4145 8.0007 28 7 1.7151 -0.4724 6.0963 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.1264 -0.7995 -1.2055 33 1 1.6054 -1.7198 -1.2951 34 1 1.9883 0.9873 -2.3966 35 1 3.2118 -0.7051 -3.6405 36 1 1.6905 -1.6249 -3.7297 37 1 2.5391 -1.0628 -6.2252 38 1 2.9104 -1.3577 -9.5291 39 1 1.6053 -1.7198 1.2952 40 1 3.1263 -0.7994 1.2057 41 1 1.1483 0.8591 2.3518 42 1 3.3634 1.5324 4.3832 43 1 2.0584 2.4752 5.1704 44 1 3.8224 1.7408 6.9313 45 1 1.2219 -1.2911 6.2618 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753629638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:35 Heat of formation + Delta-G solvation = -91.287532 kcal Electronic energy + Delta-G solvation = -26634.574942 eV Core-core repulsion = 22494.225523 eV Total energy + Delta-G solvation = -4140.349418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.78847 -39.79378 -38.42823 -37.37868 -36.59767 -35.06541 -33.91870 -33.50086 -32.55613 -31.23526 -29.89294 -27.47625 -26.87535 -25.08057 -24.19021 -23.01544 -22.25696 -21.15318 -20.63349 -19.26647 -18.50429 -18.10551 -17.87138 -16.89346 -16.51480 -16.25692 -15.97317 -15.79664 -15.47125 -15.09345 -14.78850 -14.49373 -14.45614 -14.38292 -14.16647 -13.77269 -13.55904 -13.49122 -13.34714 -12.89731 -12.64889 -12.44929 -12.00794 -11.73986 -11.55751 -11.23816 -11.18548 -11.05575 -10.99130 -10.82588 -10.64607 -10.37212 -10.25770 -9.90876 -9.55397 -9.55037 -9.40943 -8.51269 -8.11640 -7.99582 -6.45115 -3.86095 1.91586 2.22669 2.47738 2.82144 3.13733 3.24575 3.31467 3.45409 3.64058 3.86921 3.99026 4.05685 4.20461 4.24028 4.59483 4.61881 4.67805 4.79760 4.86730 5.04004 5.11140 5.21955 5.22510 5.35784 5.46520 5.58984 5.66781 5.77349 5.80464 5.87210 5.93570 6.08219 6.22412 6.30553 6.48169 6.62357 6.83522 6.95764 7.12843 7.52088 7.58237 7.64695 8.02946 8.14310 8.57453 9.14457 9.50785 10.01809 10.72601 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.046012 B = 0.001507 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.393811 B =18579.855952 C =18729.240120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.078 0.922 4 C 0.065 3.935 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.440 3.560 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 C 0.123 3.877 19 N -0.720 5.720 20 C 0.499 3.501 21 O -0.520 6.520 22 C 0.103 3.897 23 H 0.118 0.882 24 C 0.105 3.895 25 N -0.739 5.739 26 C 0.706 3.294 27 O -0.583 6.583 28 N -0.715 5.715 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.029 0.971 33 H 0.074 0.926 34 H 0.348 0.652 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.403 0.597 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.433 0.567 45 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.364 3.976 24.771 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.096 0.904 4 C -0.065 4.065 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.469 6.469 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.122 0.878 12 C -0.179 4.179 13 N -0.542 5.542 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 C -0.001 4.001 19 N -0.373 5.373 20 C 0.282 3.718 21 O -0.395 6.395 22 C -0.008 4.008 23 H 0.136 0.864 24 C -0.021 4.021 25 N -0.403 5.403 26 C 0.405 3.595 27 O -0.460 6.460 28 N -0.377 5.377 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.168 0.832 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.238 0.762 42 H 0.106 0.894 43 H 0.116 0.884 44 H 0.275 0.725 45 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -1.738 3.282 25.268 25.539 hybrid contribution 0.878 0.318 -0.969 1.346 sum -0.860 3.600 24.299 24.579 Atomic orbital electron populations 1.21769 0.93630 1.02249 1.02156 1.21347 0.97678 0.99971 0.92863 0.90385 1.21898 0.97373 0.98010 0.89229 1.60031 1.64170 1.05820 0.99777 1.21667 0.97768 0.98670 0.90092 1.19801 0.85592 0.87939 0.84084 1.90518 1.44152 1.26446 1.85748 1.41876 1.49384 1.24277 1.04465 1.19756 1.32826 1.06778 0.83601 0.87846 1.25269 0.96895 0.96638 0.99140 1.69621 1.38839 1.21765 1.24005 0.85798 0.78277 0.79570 0.80675 1.19213 1.20767 1.20731 1.21462 1.00216 0.95522 0.82877 1.45991 1.57646 1.28014 1.05642 1.20753 0.80225 0.86250 0.84599 1.90787 1.38545 1.23851 1.86319 1.21857 1.01979 0.91093 0.85869 0.86434 1.22322 0.96203 0.97023 0.86580 1.45126 1.46993 1.27209 1.20987 1.15853 0.79187 0.80902 0.83586 1.91018 1.66527 1.66243 1.22187 1.44823 1.45876 1.29145 1.17850 0.90321 0.92752 0.93689 0.95257 0.90709 0.83237 0.93861 0.89578 0.77455 0.91898 0.90962 0.91265 0.76160 0.89376 0.88356 0.72461 0.72244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.95 37.16 0.33 -0.80 16 2 C -0.10 -0.75 2.57 -90.62 -0.23 -0.98 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.07 0.66 5.07 -3.82 -0.02 0.65 16 5 N -0.67 -9.47 5.58 -115.06 -0.64 -10.11 16 6 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 7 C 0.44 10.01 7.82 -10.99 -0.09 9.93 16 8 O -0.58 -15.28 15.78 5.54 0.09 -15.19 16 9 N -0.56 -13.95 5.29 -10.96 -0.06 -14.00 16 10 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 11 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.16 13.05 55.50 0.72 -23.44 16 14 Si 0.93 20.67 29.55 -169.99 -5.02 15.64 16 15 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 C 0.12 0.88 5.06 -4.05 -0.02 0.86 16 19 N -0.72 -3.67 5.28 -60.30 -0.32 -3.99 16 20 C 0.50 3.51 6.94 -10.98 -0.08 3.44 16 21 O -0.52 -6.29 16.58 5.55 0.09 -6.20 16 22 C 0.10 0.44 4.16 -68.20 -0.28 0.15 16 23 H 0.12 0.11 8.14 -51.93 -0.42 -0.31 16 24 C 0.10 0.31 7.72 -2.98 -0.02 0.28 16 25 N -0.74 -4.38 6.39 -64.47 -0.41 -4.79 16 26 C 0.71 6.97 8.92 -88.40 -0.79 6.18 16 27 O -0.58 -8.45 18.05 5.29 0.10 -8.36 16 28 N -0.71 -5.25 5.62 -59.33 -0.33 -5.58 16 29 H 0.08 0.84 7.75 -51.93 -0.40 0.44 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.26 7.18 -51.93 -0.37 -0.12 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.35 5.10 8.43 -39.29 -0.33 4.76 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 38 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.40 0.94 7.65 -40.82 -0.31 0.63 16 42 H 0.09 0.24 7.72 -51.93 -0.40 -0.16 16 43 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 44 H 0.43 1.86 8.96 -40.82 -0.37 1.49 16 45 H 0.43 2.97 8.96 -40.82 -0.37 2.61 16 LS Contribution 382.51 15.07 5.76 5.76 Total: -1.00 -37.78 382.51 -8.10 -45.89 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -6.61 Total: 11.74 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: -1.47 Total: 12.63 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: -1.04 Total: -61.92 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: 0.28 Total: -29.75 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.78 -8.10 -45.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753629638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.401 kcal (2) G-P(sol) polarization free energy of solvation -37.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds