Wall clock time and date at job start Tue Mar 31 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47466 * 2 1 4 4 C 1.53004 * 109.46978 * 120.00361 * 2 1 3 5 5 N 1.46910 * 109.46509 * 294.99694 * 4 2 1 6 6 C 1.46903 * 110.99699 * 179.97438 * 5 4 2 7 7 C 1.50694 * 109.47020 * 179.97438 * 6 5 4 8 8 O 1.21299 * 120.00032 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00097 * 179.97438 * 7 6 5 10 10 C 1.37095 * 120.00201 * 180.02562 * 9 7 6 11 11 H 1.08003 * 120.00139 * 0.02562 * 10 9 7 12 12 C 1.38949 * 120.00267 * 180.02562 * 10 9 7 13 13 N 1.31414 * 119.99785 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00321 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47206 * 89.99833 * 14 12 10 16 16 H 1.48499 * 109.47172 * 210.00236 * 14 12 10 17 17 H 1.48500 * 109.46885 * 330.00176 * 14 12 10 18 18 C 1.53004 * 109.47312 * 239.99417 * 2 1 3 19 19 N 1.46503 * 109.46648 * 65.00514 * 18 2 1 20 20 C 1.34776 * 120.00033 * 179.97438 * 19 18 2 21 21 O 1.21283 * 119.99876 * 0.02562 * 20 19 18 22 22 C 1.50698 * 120.00060 * 179.97438 * 20 19 18 23 23 H 1.09002 * 110.49227 * 319.30453 * 22 20 19 24 24 C 1.54099 * 110.54632 * 82.00499 * 22 20 19 25 25 N 1.47059 * 103.86318 * 118.73989 * 24 22 20 26 26 C 1.33943 * 109.17709 * 359.97438 * 25 24 22 27 27 O 1.21594 * 123.04015 * 179.97438 * 26 25 24 28 28 N 1.33949 * 113.91724 * 0.02562 * 26 25 24 29 29 H 1.08996 * 109.46848 * 300.00242 * 1 2 3 30 30 H 1.09006 * 109.46282 * 60.00068 * 1 2 3 31 31 H 1.08998 * 109.47466 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47434 * 54.99445 * 4 2 1 33 33 H 1.08994 * 109.47741 * 175.00229 * 4 2 1 34 34 H 1.00895 * 110.99929 * 303.95017 * 5 4 2 35 35 H 1.08996 * 109.47167 * 300.00102 * 6 5 4 36 36 H 1.09005 * 109.46961 * 60.00518 * 6 5 4 37 37 H 0.96996 * 120.00010 * 0.02562 * 9 7 6 38 38 H 0.97001 * 119.99915 * 179.97438 * 13 12 10 39 39 H 1.08999 * 109.47487 * 305.00693 * 18 2 1 40 40 H 1.09003 * 109.47105 * 184.99989 * 18 2 1 41 41 H 0.96996 * 120.00068 * 359.97438 * 19 18 2 42 42 H 1.09006 * 110.54916 * 237.33167 * 24 22 20 43 43 H 1.08996 * 110.55263 * 359.97438 * 24 22 20 44 44 H 0.97000 * 125.40667 * 180.02562 * 25 24 22 45 45 H 0.96999 * 125.40910 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6513 0.0374 2.4456 6 6 2.1246 -0.6272 3.6673 7 6 1.7087 0.1787 4.8708 8 8 1.0794 1.2054 4.7253 9 7 2.0350 -0.2420 6.1090 10 6 1.6561 0.4908 7.2040 11 1 1.0958 1.4050 7.0745 12 6 1.9930 0.0575 8.4805 13 7 2.6752 -1.0546 8.6381 14 14 1.4762 1.0556 9.9725 15 1 0.1429 0.5961 10.4378 16 1 2.4705 0.8713 11.0599 17 1 1.4042 2.4928 9.6058 18 6 2.0401 -0.7214 -1.2492 19 7 1.6526 0.0353 -2.4424 20 6 1.9966 -0.4132 -3.6659 21 8 2.6266 -1.4434 -3.7792 22 6 1.5975 0.3648 -4.8933 23 1 0.5813 0.7454 -4.7901 24 6 2.5849 1.5207 -5.1457 25 7 3.1553 1.2148 -6.4662 26 6 2.6125 0.0806 -6.9279 27 8 2.9058 -0.4048 -8.0035 28 7 1.7167 -0.4698 -6.0981 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7198 1.2952 33 1 3.1262 -0.7996 1.2057 34 1 1.9882 0.9872 2.3967 35 1 1.6902 -1.6248 3.7297 36 1 3.2115 -0.7051 3.6407 37 1 2.5378 -1.0632 6.2254 38 1 2.9107 -1.3570 9.5292 39 1 1.6054 -1.7199 -1.2951 40 1 3.1264 -0.7996 -1.2055 41 1 1.1484 0.8589 -2.3518 42 1 2.0589 2.4752 -5.1679 43 1 3.3635 1.5322 -4.3831 44 1 3.8196 1.7491 -6.9289 45 1 1.2246 -1.2888 -6.2654 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753629640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:38 Heat of formation + Delta-G solvation = -91.294500 kcal Electronic energy + Delta-G solvation = -26634.229126 eV Core-core repulsion = 22493.879405 eV Total energy + Delta-G solvation = -4140.349721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.80207 -39.79739 -38.42684 -37.37788 -36.60540 -35.06473 -33.91735 -33.51722 -32.55550 -31.23425 -29.89020 -27.47549 -26.87455 -25.07953 -24.19079 -23.01482 -22.26493 -21.15397 -20.63402 -19.26551 -18.50913 -18.10618 -17.87084 -16.89531 -16.51652 -16.26193 -15.97354 -15.79923 -15.47215 -15.09792 -14.78551 -14.49683 -14.45701 -14.38259 -14.16717 -13.77322 -13.55773 -13.49162 -13.34771 -12.89694 -12.64855 -12.44712 -12.00663 -11.73853 -11.55470 -11.23298 -11.18463 -11.04284 -10.98935 -10.82701 -10.64816 -10.42266 -10.25012 -9.90828 -9.55074 -9.54194 -9.40826 -8.51216 -8.11575 -7.99457 -6.44898 -3.85951 1.91492 2.22732 2.47961 2.81818 3.15394 3.24297 3.29714 3.45952 3.63943 3.86994 3.99108 4.05757 4.20408 4.24037 4.59552 4.62156 4.67813 4.79769 4.86753 5.04419 5.11289 5.22043 5.22537 5.35824 5.46541 5.59018 5.66827 5.77371 5.80512 5.87190 5.93683 6.08238 6.22490 6.30596 6.47954 6.62396 6.83433 6.95774 7.12875 7.51978 7.58317 7.64666 8.02788 8.14055 8.57591 9.14462 9.50837 10.01925 10.72736 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.045997 B = 0.001507 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.594376 B =18581.171824 C =18730.597018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.078 0.922 4 C 0.065 3.935 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.440 3.560 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.301 4.301 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.901 5.901 14 Si 0.931 3.069 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.123 3.877 19 N -0.720 5.720 20 C 0.499 3.501 21 O -0.521 6.521 22 C 0.103 3.897 23 H 0.118 0.882 24 C 0.104 3.896 25 N -0.739 5.739 26 C 0.706 3.294 27 O -0.583 6.583 28 N -0.714 5.714 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.029 0.971 34 H 0.348 0.652 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.403 0.597 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.433 0.567 45 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 3.944 -24.747 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.096 0.904 4 C -0.065 4.065 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.469 6.469 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.542 5.542 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.001 4.001 19 N -0.373 5.373 20 C 0.282 3.718 21 O -0.395 6.395 22 C -0.008 4.008 23 H 0.136 0.864 24 C -0.022 4.022 25 N -0.402 5.402 26 C 0.405 3.595 27 O -0.460 6.460 28 N -0.377 5.377 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.168 0.832 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.226 0.774 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.238 0.762 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.276 0.724 45 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -1.713 3.252 -25.242 25.508 hybrid contribution 0.865 0.325 0.966 1.337 sum -0.848 3.576 -24.276 24.553 Atomic orbital electron populations 1.21768 0.93629 1.02250 1.02155 1.21347 0.97678 0.99971 0.92863 0.90383 1.21899 0.97373 0.98010 0.89231 1.60036 1.64164 1.05821 0.99776 1.21666 0.97771 0.98662 0.90093 1.19799 0.85606 0.87947 0.84082 1.90518 1.44184 1.26440 1.85745 1.41867 1.49446 1.24198 1.04454 1.19705 1.32954 1.06750 0.83621 0.87906 1.25268 0.96860 0.96651 0.99130 1.69613 1.38773 1.21751 1.24098 0.85851 0.78194 0.79896 0.80301 1.20374 1.20934 1.19434 1.21466 1.00217 0.95520 0.82871 1.45991 1.57643 1.28017 1.05639 1.20745 0.80224 0.86243 0.84599 1.90786 1.38546 1.23852 1.86322 1.21853 1.01972 0.91095 0.85855 0.86429 1.22252 0.96249 0.97060 0.86611 1.45049 1.47155 1.27204 1.20827 1.15860 0.79187 0.80889 0.83611 1.91021 1.66494 1.66434 1.22022 1.44821 1.45961 1.29143 1.17764 0.90320 0.93689 0.92751 0.90710 0.95255 0.83238 0.89575 0.93868 0.77450 0.91845 0.90959 0.91261 0.76159 0.88417 0.89419 0.72438 0.72246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.95 37.16 0.33 -0.80 16 2 C -0.10 -0.75 2.57 -90.62 -0.23 -0.98 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.07 0.66 5.08 -3.82 -0.02 0.65 16 5 N -0.67 -9.48 5.58 -115.05 -0.64 -10.12 16 6 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 7 C 0.44 10.01 7.82 -10.99 -0.09 9.93 16 8 O -0.58 -15.29 15.78 5.54 0.09 -15.20 16 9 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 10 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 11 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.16 13.05 55.50 0.72 -23.43 16 14 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 C 0.12 0.88 5.06 -4.04 -0.02 0.86 16 19 N -0.72 -3.68 5.28 -60.29 -0.32 -4.00 16 20 C 0.50 3.52 6.94 -10.99 -0.08 3.44 16 21 O -0.52 -6.29 16.58 5.55 0.09 -6.20 16 22 C 0.10 0.44 4.17 -68.21 -0.28 0.15 16 23 H 0.12 0.11 8.14 -51.93 -0.42 -0.31 16 24 C 0.10 0.31 7.70 -3.16 -0.02 0.28 16 25 N -0.74 -4.37 6.37 -64.70 -0.41 -4.78 16 26 C 0.71 6.96 8.92 -88.40 -0.79 6.17 16 27 O -0.58 -8.44 18.05 5.28 0.10 -8.35 16 28 N -0.71 -5.24 5.62 -59.33 -0.33 -5.58 16 29 H 0.08 0.84 7.75 -51.93 -0.40 0.44 16 30 H 0.04 0.26 7.18 -51.93 -0.37 -0.12 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.35 5.10 8.43 -39.29 -0.33 4.77 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 38 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.40 0.94 7.65 -40.82 -0.31 0.63 16 42 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 43 H 0.09 0.25 7.72 -51.93 -0.40 -0.16 16 44 H 0.43 1.85 8.96 -40.82 -0.37 1.49 16 45 H 0.43 2.97 8.96 -40.82 -0.37 2.60 16 LS Contribution 382.49 15.07 5.76 5.76 Total: -1.00 -37.74 382.49 -8.11 -45.84 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -6.61 Total: 11.77 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: -1.47 Total: 12.62 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -1.04 Total: -61.91 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: 0.27 Total: -29.74 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.74 -8.11 -45.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753629640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.451 kcal (2) G-P(sol) polarization free energy of solvation -37.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds