Wall clock time and date at job start Tue Mar 31 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46867 * 2 1 4 4 C 1.52993 * 109.47401 * 119.99970 * 2 1 3 5 5 N 1.46901 * 109.46977 * 295.00337 * 4 2 1 6 6 C 1.46902 * 110.99844 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.47027 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00255 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72353 * 7 6 5 10 10 C 1.37101 * 120.00327 * 180.27606 * 9 7 6 11 11 H 1.08001 * 119.99426 * 0.02562 * 10 9 7 12 12 C 1.38942 * 120.00412 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00005 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00325 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46989 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46903 * 119.99798 * 14 12 10 17 17 H 1.48498 * 109.47416 * 240.00213 * 14 12 10 18 18 C 1.53001 * 109.47291 * 240.00236 * 2 1 3 19 19 N 1.46500 * 109.46914 * 64.99875 * 18 2 1 20 20 C 1.34778 * 119.99532 * 179.97438 * 19 18 2 21 21 O 1.21280 * 120.00501 * 0.02562 * 20 19 18 22 22 C 1.50703 * 119.99941 * 179.97438 * 20 19 18 23 23 H 1.09004 * 110.48894 * 40.69873 * 22 20 19 24 24 C 1.54112 * 110.55030 * 278.00275 * 22 20 19 25 25 N 1.47387 * 103.70300 * 241.44137 * 24 22 20 26 26 C 1.33956 * 109.21171 * 359.88428 * 25 24 22 27 27 O 1.21579 * 123.04050 * 180.02562 * 26 25 24 28 28 N 1.33953 * 113.91238 * 0.07827 * 26 25 24 29 29 H 1.08997 * 109.47455 * 299.99922 * 1 2 3 30 30 H 1.09000 * 109.47007 * 59.99806 * 1 2 3 31 31 H 1.08993 * 109.46935 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47854 * 175.00226 * 4 2 1 33 33 H 1.09005 * 109.47140 * 55.00107 * 4 2 1 34 34 H 1.00895 * 111.00207 * 303.94924 * 5 4 2 35 35 H 1.09004 * 109.47131 * 60.00016 * 6 5 4 36 36 H 1.08994 * 109.47471 * 299.99766 * 6 5 4 37 37 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 38 38 H 0.96996 * 120.00330 * 179.97438 * 13 12 10 39 39 H 1.08997 * 109.47156 * 184.99692 * 18 2 1 40 40 H 1.09002 * 109.47035 * 304.99816 * 18 2 1 41 41 H 0.96991 * 120.00585 * 359.97438 * 19 18 2 42 42 H 1.08998 * 110.54448 * 359.97438 * 24 22 20 43 43 H 1.09002 * 110.54574 * 122.80860 * 24 22 20 44 44 H 0.96996 * 125.37954 * 179.97438 * 25 24 22 45 45 H 0.96998 * 125.40620 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6514 0.0375 2.4456 6 6 2.1248 -0.6271 3.6671 7 6 1.7088 0.1787 4.8708 8 8 1.0794 1.2053 4.7254 9 7 2.0308 -0.2446 6.1092 10 6 1.6475 0.4854 7.2045 11 1 1.0871 1.3996 7.0749 12 6 1.9800 0.0494 8.4812 13 7 2.6623 -1.0626 8.6388 14 14 1.4583 1.0444 9.9735 15 1 0.7069 2.2459 9.5293 16 1 0.5900 0.2122 10.8445 17 1 2.6627 1.4661 10.7330 18 6 2.0400 -0.7212 -1.2493 19 7 1.6524 0.0355 -2.4424 20 6 1.9965 -0.4129 -3.6659 21 8 2.6266 -1.4430 -3.7793 22 6 1.5974 0.3651 -4.8933 23 1 1.7184 1.4349 -4.7230 24 6 0.1437 0.0416 -5.2898 25 7 0.2708 -0.5408 -6.6378 26 6 1.5633 -0.5612 -6.9890 27 8 1.9533 -0.9919 -8.0570 28 7 2.3873 -0.0651 -6.0566 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1263 -0.7994 1.2056 33 1 1.6054 -1.7198 1.2951 34 1 1.9881 0.9873 2.3967 35 1 3.2117 -0.7050 3.6405 36 1 1.6905 -1.6248 3.7297 37 1 2.5339 -1.0657 6.2256 38 1 2.8947 -1.3669 9.5299 39 1 3.1263 -0.7994 -1.2056 40 1 1.6054 -1.7198 -1.2952 41 1 1.1483 0.8591 -2.3518 42 1 -0.2892 -0.6821 -4.5992 43 1 -0.4564 0.9511 -5.3189 44 1 -0.4652 -0.8577 -7.1843 45 1 3.3518 0.0004 -6.1364 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753629642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:41 Heat of formation + Delta-G solvation = -91.285428 kcal Electronic energy + Delta-G solvation = -26643.456016 eV Core-core repulsion = 22503.106689 eV Total energy + Delta-G solvation = -4140.349327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78728 -39.79376 -38.42828 -37.37885 -36.59785 -35.06529 -33.91855 -33.50003 -32.55554 -31.23446 -29.89465 -27.47925 -26.86669 -25.08692 -24.19232 -23.01176 -22.25630 -21.16204 -20.61765 -19.26538 -18.50816 -18.11952 -17.87520 -16.87690 -16.53136 -16.12429 -15.99554 -15.91254 -15.48703 -14.94832 -14.85965 -14.65200 -14.42825 -14.34942 -14.06521 -13.73226 -13.61660 -13.49272 -13.39077 -12.86514 -12.65118 -12.45331 -12.00769 -11.74270 -11.55744 -11.23877 -11.18745 -11.05581 -10.99480 -10.82331 -10.64542 -10.37169 -10.25743 -9.90761 -9.55365 -9.55046 -9.40824 -8.51311 -8.11645 -7.99512 -6.45024 -3.86070 1.91782 2.22450 2.47990 2.82193 3.13776 3.24616 3.31513 3.45584 3.64237 3.86832 3.99178 4.05789 4.20425 4.24085 4.59518 4.62196 4.67675 4.80262 4.86598 5.04081 5.11280 5.21981 5.22390 5.36060 5.46313 5.58618 5.66751 5.76807 5.80358 5.87099 5.93674 6.08113 6.22419 6.30162 6.48242 6.62450 6.83587 6.95819 7.12869 7.52151 7.58239 7.64735 8.02989 8.14393 8.57471 9.14507 9.50826 10.01817 10.72705 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.052384 B = 0.001502 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.388824 B =18640.595239 C =18919.742709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.078 0.922 4 C 0.065 3.935 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.440 3.560 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 C 0.123 3.877 19 N -0.720 5.720 20 C 0.499 3.501 21 O -0.520 6.520 22 C 0.103 3.897 23 H 0.118 0.882 24 C 0.105 3.895 25 N -0.739 5.739 26 C 0.706 3.294 27 O -0.583 6.583 28 N -0.715 5.715 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.029 0.971 33 H 0.074 0.926 34 H 0.348 0.652 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.403 0.597 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.433 0.567 45 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 2.695 -24.899 25.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.096 0.904 4 C -0.065 4.065 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.469 6.469 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.122 0.878 12 C -0.179 4.179 13 N -0.542 5.542 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.208 1.208 18 C -0.001 4.001 19 N -0.373 5.373 20 C 0.282 3.718 21 O -0.395 6.395 22 C -0.008 4.008 23 H 0.135 0.865 24 C -0.021 4.021 25 N -0.403 5.403 26 C 0.405 3.595 27 O -0.460 6.460 28 N -0.377 5.377 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.168 0.832 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.238 0.762 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.275 0.725 45 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -3.799 2.035 -25.393 25.756 hybrid contribution 0.936 0.353 0.973 1.395 sum -2.863 2.388 -24.420 24.703 Atomic orbital electron populations 1.21766 0.93626 1.02234 1.02165 1.21347 0.97683 0.99987 0.92866 0.90393 1.21897 0.97381 0.98003 0.89231 1.60035 1.64159 1.05828 0.99777 1.21668 0.97777 0.98659 0.90094 1.19801 0.85602 0.87927 0.84082 1.90517 1.44141 1.26452 1.85751 1.41877 1.49465 1.24231 1.04434 1.19756 1.32825 1.06797 0.83577 0.87848 1.25267 0.96899 0.96633 0.99139 1.69618 1.38917 1.21707 1.24000 0.85798 0.78283 0.79564 0.80678 1.19213 1.20731 1.20768 1.21462 1.00243 0.95491 0.82875 1.45992 1.57633 1.28048 1.05624 1.20752 0.80347 0.86149 0.84579 1.90786 1.38763 1.23625 1.86322 1.21859 0.92038 1.00291 0.86621 0.86456 1.22325 0.94061 1.00456 0.85274 1.45127 1.07766 1.68392 1.19027 1.15855 0.81841 0.78171 0.83659 1.91017 1.78200 1.53113 1.23646 1.44822 1.09844 1.67537 1.15506 0.90321 0.93676 0.92749 0.95259 0.90709 0.83233 0.93871 0.89569 0.77453 0.91896 0.91250 0.90978 0.76161 0.89338 0.88356 0.72461 0.72256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.95 37.16 0.33 -0.77 16 2 C -0.10 -0.75 2.57 -90.62 -0.23 -0.99 16 3 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.07 0.66 5.07 -3.83 -0.02 0.65 16 5 N -0.67 -9.48 5.58 -115.06 -0.64 -10.12 16 6 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 7 C 0.44 10.02 7.82 -10.98 -0.09 9.93 16 8 O -0.58 -15.28 15.78 5.55 0.09 -15.20 16 9 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 10 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 11 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 14 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 15 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 C 0.12 0.88 5.06 -4.04 -0.02 0.86 16 19 N -0.72 -3.67 5.28 -60.29 -0.32 -3.99 16 20 C 0.50 3.51 6.94 -10.98 -0.08 3.44 16 21 O -0.52 -6.29 16.58 5.56 0.09 -6.20 16 22 C 0.10 0.44 4.16 -68.20 -0.28 0.15 16 23 H 0.12 0.11 8.14 -51.93 -0.42 -0.31 16 24 C 0.10 0.31 7.72 -2.98 -0.02 0.28 16 25 N -0.74 -4.36 6.39 -64.46 -0.41 -4.78 16 26 C 0.71 6.97 8.92 -88.39 -0.79 6.18 16 27 O -0.58 -8.45 18.05 5.30 0.10 -8.35 16 28 N -0.71 -5.25 5.62 -59.32 -0.33 -5.59 16 29 H 0.08 0.83 7.75 -51.93 -0.40 0.43 16 30 H 0.04 0.24 7.18 -51.93 -0.37 -0.13 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.35 5.11 8.43 -39.29 -0.33 4.78 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 38 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.40 0.94 7.65 -40.82 -0.31 0.63 16 42 H 0.09 0.25 7.72 -51.93 -0.40 -0.15 16 43 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 44 H 0.43 1.84 8.96 -40.82 -0.37 1.48 16 45 H 0.43 2.98 8.96 -40.82 -0.37 2.61 16 LS Contribution 382.50 15.07 5.76 5.76 Total: -1.00 -37.78 382.50 -8.10 -45.88 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -6.61 Total: 11.72 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: -1.47 Total: 12.66 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -1.04 Total: -61.93 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: 0.28 Total: -29.75 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.78 -8.10 -45.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753629642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.402 kcal (2) G-P(sol) polarization free energy of solvation -37.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds