Wall clock time and date at job start Tue Mar 31 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47278 * 2 1 4 4 C 1.53002 * 109.47136 * 240.00202 * 2 1 3 5 5 N 1.46893 * 109.47445 * 64.99763 * 4 2 1 6 6 C 1.46896 * 111.00278 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47503 * 180.02562 * 6 5 4 8 8 O 1.21295 * 119.99549 * 0.02562 * 7 6 5 9 9 N 1.34767 * 120.00318 * 179.97438 * 7 6 5 10 10 C 1.37103 * 120.00233 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99280 * 0.02562 * 10 9 7 12 12 C 1.38952 * 120.00045 * 180.02562 * 10 9 7 13 13 N 1.31407 * 119.99972 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99802 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47290 * 89.99483 * 14 12 10 16 16 H 1.48499 * 109.47027 * 209.99588 * 14 12 10 17 17 H 1.48503 * 109.47024 * 329.99765 * 14 12 10 18 18 C 1.53001 * 109.47161 * 120.00076 * 2 1 3 19 19 N 1.46504 * 109.47139 * 294.99954 * 18 2 1 20 20 C 1.34773 * 119.99875 * 180.02562 * 19 18 2 21 21 O 1.21284 * 119.99990 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99744 * 179.97438 * 20 19 18 23 23 H 1.08996 * 110.49171 * 317.29483 * 22 20 19 24 24 C 1.54104 * 110.54738 * 80.00228 * 22 20 19 25 25 N 1.47054 * 103.86470 * 118.73619 * 24 22 20 26 26 C 1.33945 * 109.17868 * 0.26673 * 25 24 22 27 27 O 1.21582 * 123.04490 * 179.74026 * 26 25 24 28 28 N 1.33951 * 113.91634 * 359.52209 * 26 25 24 29 29 H 1.09006 * 109.47002 * 300.00084 * 1 2 3 30 30 H 1.09003 * 109.47238 * 59.99718 * 1 2 3 31 31 H 1.09001 * 109.47278 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47404 * 185.00579 * 4 2 1 33 33 H 1.09005 * 109.46544 * 304.99730 * 4 2 1 34 34 H 1.00902 * 111.00192 * 303.96219 * 5 4 2 35 35 H 1.09005 * 109.46975 * 300.00311 * 6 5 4 36 36 H 1.09002 * 109.46971 * 60.00274 * 6 5 4 37 37 H 0.97002 * 119.99989 * 0.02562 * 9 7 6 38 38 H 0.96997 * 119.99701 * 179.97438 * 13 12 10 39 39 H 1.09005 * 109.47052 * 174.99636 * 18 2 1 40 40 H 1.09003 * 109.46993 * 55.00211 * 18 2 1 41 41 H 0.96991 * 119.99810 * 359.97438 * 19 18 2 42 42 H 1.09003 * 110.54793 * 0.13795 * 24 22 20 43 43 H 1.09001 * 110.66763 * 237.39403 * 24 22 20 44 44 H 0.97001 * 125.40780 * 179.97438 * 25 24 22 45 45 H 0.96997 * 125.41254 * 180.21089 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6513 0.0374 -2.4456 6 6 2.1247 -0.6271 -3.6672 7 6 1.7087 0.1786 -4.8709 8 8 1.0802 1.2057 -4.7253 9 7 2.0360 -0.2414 -6.1089 10 6 1.6580 0.4919 -7.2039 11 1 1.0983 1.4064 -7.0743 12 6 1.9949 0.0584 -8.4804 13 7 2.6763 -1.0540 -8.6380 14 14 1.4806 1.0580 -9.9722 15 1 2.5416 2.0450 -10.2966 16 1 1.2779 0.1506 -11.1301 17 1 0.2132 1.7731 -9.6759 18 6 2.0399 -0.7213 1.2492 19 7 1.6524 0.0353 2.4424 20 6 1.9964 -0.4131 3.6659 21 8 2.6264 -1.4433 3.7791 22 6 1.5982 0.3655 4.8932 23 1 1.7535 1.4327 4.7351 24 6 0.1290 0.0812 5.2610 25 7 0.2103 -0.5113 6.6044 26 6 1.4939 -0.5687 6.9831 27 8 1.8488 -1.0125 8.0579 28 7 2.3514 -0.0971 6.0685 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1262 -0.7995 -1.2056 33 1 1.6053 -1.7198 -1.2951 34 1 0.6528 0.1794 -2.4753 35 1 3.2116 -0.7051 -3.6405 36 1 1.6902 -1.6249 -3.7297 37 1 2.5389 -1.0627 -6.2253 38 1 2.9112 -1.3568 -9.5291 39 1 3.1263 -0.7995 1.2055 40 1 1.6053 -1.7199 1.2951 41 1 1.1489 0.8594 2.3518 42 1 -0.3118 -0.6250 4.5574 43 1 -0.4475 1.0060 5.2850 44 1 -0.5458 -0.8091 7.1341 45 1 3.3157 -0.0624 6.1674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753629643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:44 Heat of formation + Delta-G solvation = -90.969702 kcal Electronic energy + Delta-G solvation = -26652.541966 eV Core-core repulsion = 22512.206330 eV Total energy + Delta-G solvation = -4140.335636 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.80326 -39.80474 -38.44988 -37.42027 -36.61678 -35.07329 -33.91997 -33.51550 -32.53389 -31.23323 -29.90035 -27.48905 -26.99309 -25.12392 -24.20889 -23.04242 -22.26388 -21.16270 -20.46385 -19.29519 -18.51377 -18.11743 -17.88739 -16.89974 -16.67510 -16.13505 -16.05186 -15.84519 -15.57273 -14.96894 -14.85519 -14.56171 -14.43661 -14.33113 -14.11099 -13.77945 -13.67245 -13.48649 -13.10665 -13.05844 -12.76151 -12.65024 -12.11422 -11.64593 -11.58297 -11.31586 -11.13016 -11.06621 -10.99516 -10.82556 -10.65264 -10.42150 -10.24936 -9.91198 -9.55261 -9.54141 -9.41045 -8.51285 -8.12471 -7.99489 -6.44828 -3.85874 1.92592 2.21642 2.47872 2.81594 3.15489 3.24384 3.29823 3.45773 3.63308 3.87063 3.99222 4.06017 4.20831 4.24496 4.59654 4.60944 4.63180 4.76302 4.82888 5.04103 5.07891 5.21623 5.24436 5.31741 5.41477 5.50440 5.60534 5.72896 5.75884 5.87469 5.93842 6.00210 6.08071 6.22847 6.47872 6.62436 6.83235 6.95795 7.13518 7.52080 7.59107 7.64682 8.02922 8.13904 8.57674 9.14516 9.50879 10.01992 10.72824 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.052260 B = 0.001503 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.653382 B =18621.833650 C =18908.360235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.102 4.102 3 H 0.090 0.910 4 C 0.065 3.935 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.585 6.585 9 N -0.563 5.563 10 C -0.301 4.301 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.901 5.901 14 Si 0.931 3.069 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.124 3.876 19 N -0.720 5.720 20 C 0.499 3.501 21 O -0.520 6.520 22 C 0.103 3.897 23 H 0.119 0.881 24 C 0.104 3.896 25 N -0.739 5.739 26 C 0.706 3.294 27 O -0.582 6.582 28 N -0.714 5.714 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.030 0.970 34 H 0.349 0.651 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.403 0.597 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.433 0.567 45 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.874 1.811 24.842 25.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.121 4.121 3 H 0.109 0.891 4 C -0.065 4.065 5 N -0.301 5.301 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.469 6.469 9 N -0.199 5.199 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.542 5.542 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.000 4.000 19 N -0.373 5.373 20 C 0.282 3.718 21 O -0.395 6.395 22 C -0.008 4.008 23 H 0.136 0.864 24 C -0.022 4.022 25 N -0.403 5.403 26 C 0.404 3.596 27 O -0.460 6.460 28 N -0.377 5.377 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.169 0.831 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.226 0.774 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.238 0.762 42 H 0.106 0.894 43 H 0.116 0.884 44 H 0.276 0.724 45 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -4.050 1.838 25.401 25.787 hybrid contribution -0.613 -0.539 -1.059 1.337 sum -4.663 1.299 24.342 24.819 Atomic orbital electron populations 1.21910 0.94657 1.02101 1.02366 1.21369 0.96493 1.01223 0.92984 0.89138 1.21882 1.00833 0.94429 0.89346 1.60094 1.21024 1.49006 1.00019 1.21674 1.01212 0.95382 0.89996 1.19798 0.85672 0.87955 0.84031 1.90516 1.44502 1.26180 1.85713 1.41866 1.49475 1.24155 1.04442 1.19710 1.33033 1.06698 0.83606 0.87900 1.25267 0.96876 0.96626 0.99133 1.69609 1.38820 1.21682 1.24110 0.85850 0.79150 0.79049 0.80188 1.20373 1.20932 1.19430 1.21447 1.00503 0.95246 0.82783 1.45986 1.57700 1.28012 1.05620 1.20736 0.80325 0.86138 0.84569 1.90786 1.38744 1.23642 1.86322 1.21854 0.92384 1.00103 0.86455 0.86379 1.22260 0.93957 1.00431 0.85543 1.45052 1.07696 1.68405 1.19116 1.15861 0.81782 0.78219 0.83707 1.91018 1.79613 1.52445 1.22883 1.44821 1.09583 1.67645 1.15629 0.92710 0.91317 0.92617 0.90742 0.95164 0.83068 0.89548 0.93841 0.77441 0.91842 0.90968 0.91172 0.76170 0.89433 0.88423 0.72449 0.72215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.84 37.15 0.33 -0.73 16 2 C -0.10 -0.77 2.63 -90.62 -0.24 -1.01 16 3 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.07 0.68 5.14 -3.83 -0.02 0.66 16 5 N -0.67 -9.73 6.12 -115.06 -0.70 -10.43 16 6 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 7 C 0.44 10.08 7.82 -10.99 -0.09 10.00 16 8 O -0.58 -15.40 15.78 5.54 0.09 -15.32 16 9 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 10 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 11 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 14 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 16 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 C 0.12 0.88 5.06 -4.04 -0.02 0.86 16 19 N -0.72 -3.63 5.28 -60.29 -0.32 -3.95 16 20 C 0.50 3.50 6.95 -10.99 -0.08 3.42 16 21 O -0.52 -6.26 16.57 5.55 0.09 -6.17 16 22 C 0.10 0.43 4.17 -68.20 -0.28 0.15 16 23 H 0.12 0.11 8.14 -51.93 -0.42 -0.31 16 24 C 0.10 0.29 7.70 -3.16 -0.02 0.27 16 25 N -0.74 -4.29 6.37 -64.70 -0.41 -4.70 16 26 C 0.71 6.92 8.92 -88.40 -0.79 6.13 16 27 O -0.58 -8.42 18.05 5.29 0.10 -8.32 16 28 N -0.71 -5.25 5.61 -59.33 -0.33 -5.58 16 29 H 0.05 0.25 7.18 -51.93 -0.37 -0.12 16 30 H 0.07 0.59 6.68 -51.93 -0.35 0.25 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.35 5.20 6.68 -39.29 -0.26 4.94 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.39 9.32 7.90 -40.82 -0.32 8.99 16 38 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.40 0.90 7.65 -40.82 -0.31 0.59 16 42 H 0.09 0.23 7.72 -51.93 -0.40 -0.18 16 43 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 44 H 0.43 1.80 8.96 -40.82 -0.37 1.43 16 45 H 0.44 3.00 8.96 -40.82 -0.37 2.64 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -38.00 380.21 -8.09 -46.09 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -6.49 Total: 11.82 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: -1.48 Total: 12.65 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -1.10 Total: -62.16 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: 0.28 Total: -29.81 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.00 -8.09 -46.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753629643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.877 kcal (2) G-P(sol) polarization free energy of solvation -38.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds