Wall clock time and date at job start Tue Mar 31 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47278 * 2 1 4 4 C 1.53002 * 109.47136 * 240.00202 * 2 1 3 5 5 N 1.46893 * 109.47445 * 64.99763 * 4 2 1 6 6 C 1.46896 * 111.00278 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47503 * 180.02562 * 6 5 4 8 8 O 1.21295 * 119.99549 * 0.02562 * 7 6 5 9 9 N 1.34767 * 120.00318 * 179.97438 * 7 6 5 10 10 C 1.37103 * 120.00233 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99280 * 0.02562 * 10 9 7 12 12 C 1.38952 * 120.00045 * 180.02562 * 10 9 7 13 13 N 1.31407 * 119.99972 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99802 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47290 * 89.99483 * 14 12 10 16 16 H 1.48499 * 109.47027 * 209.99588 * 14 12 10 17 17 H 1.48503 * 109.47024 * 329.99765 * 14 12 10 18 18 C 1.53001 * 109.47161 * 120.00076 * 2 1 3 19 19 N 1.46504 * 109.47139 * 294.99954 * 18 2 1 20 20 C 1.34773 * 119.99875 * 180.02562 * 19 18 2 21 21 O 1.21284 * 119.99990 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99744 * 179.97438 * 20 19 18 23 23 H 1.08996 * 110.49171 * 317.29483 * 22 20 19 24 24 C 1.54104 * 110.54738 * 80.00228 * 22 20 19 25 25 N 1.47054 * 103.86470 * 118.73619 * 24 22 20 26 26 C 1.33945 * 109.17868 * 0.26673 * 25 24 22 27 27 O 1.21582 * 123.04490 * 179.74026 * 26 25 24 28 28 N 1.33951 * 113.91634 * 359.52209 * 26 25 24 29 29 H 1.09006 * 109.47002 * 300.00084 * 1 2 3 30 30 H 1.09003 * 109.47238 * 59.99718 * 1 2 3 31 31 H 1.09001 * 109.47278 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47404 * 185.00579 * 4 2 1 33 33 H 1.09005 * 109.46544 * 304.99730 * 4 2 1 34 34 H 1.00902 * 111.00192 * 303.96219 * 5 4 2 35 35 H 1.09005 * 109.46975 * 300.00311 * 6 5 4 36 36 H 1.09002 * 109.46971 * 60.00274 * 6 5 4 37 37 H 0.97002 * 119.99989 * 0.02562 * 9 7 6 38 38 H 0.96997 * 119.99701 * 179.97438 * 13 12 10 39 39 H 1.09005 * 109.47052 * 174.99636 * 18 2 1 40 40 H 1.09003 * 109.46993 * 55.00211 * 18 2 1 41 41 H 0.96991 * 119.99810 * 359.97438 * 19 18 2 42 42 H 1.09003 * 110.54793 * 0.13795 * 24 22 20 43 43 H 1.09001 * 110.66763 * 237.39403 * 24 22 20 44 44 H 0.97001 * 125.40780 * 179.97438 * 25 24 22 45 45 H 0.96997 * 125.41254 * 180.21089 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6513 0.0374 -2.4456 6 6 2.1247 -0.6271 -3.6672 7 6 1.7087 0.1786 -4.8709 8 8 1.0802 1.2057 -4.7253 9 7 2.0360 -0.2414 -6.1089 10 6 1.6580 0.4919 -7.2039 11 1 1.0983 1.4064 -7.0743 12 6 1.9949 0.0584 -8.4804 13 7 2.6763 -1.0540 -8.6380 14 14 1.4806 1.0580 -9.9722 15 1 2.5416 2.0450 -10.2966 16 1 1.2779 0.1506 -11.1301 17 1 0.2132 1.7731 -9.6759 18 6 2.0399 -0.7213 1.2492 19 7 1.6524 0.0353 2.4424 20 6 1.9964 -0.4131 3.6659 21 8 2.6264 -1.4433 3.7791 22 6 1.5982 0.3655 4.8932 23 1 1.7535 1.4327 4.7351 24 6 0.1290 0.0812 5.2610 25 7 0.2103 -0.5113 6.6044 26 6 1.4939 -0.5687 6.9831 27 8 1.8488 -1.0125 8.0579 28 7 2.3514 -0.0971 6.0685 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1262 -0.7995 -1.2056 33 1 1.6053 -1.7198 -1.2951 34 1 0.6528 0.1794 -2.4753 35 1 3.2116 -0.7051 -3.6405 36 1 1.6902 -1.6249 -3.7297 37 1 2.5389 -1.0627 -6.2253 38 1 2.9112 -1.3568 -9.5291 39 1 3.1263 -0.7995 1.2055 40 1 1.6053 -1.7199 1.2951 41 1 1.1489 0.8594 2.3518 42 1 -0.3118 -0.6250 4.5574 43 1 -0.4475 1.0060 5.2850 44 1 -0.5458 -0.8091 7.1341 45 1 3.3157 -0.0624 6.1674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753629643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:43 Heat of formation + Delta-G solvation = -127.011759 kcal Electronic energy + Delta-G solvation = -26654.104867 eV Core-core repulsion = 22512.206330 eV Total energy + Delta-G solvation = -4141.898537 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.33805 -40.45802 -40.13266 -38.34569 -37.35171 -36.18164 -35.65920 -34.00483 -33.48345 -33.14159 -30.42563 -28.74529 -27.64239 -26.53858 -25.06389 -23.97884 -22.82812 -21.71322 -21.28625 -20.91102 -19.90266 -19.10329 -18.57824 -17.90040 -17.42466 -17.18588 -16.85519 -16.64163 -16.54222 -16.35407 -15.94023 -15.57557 -15.48587 -15.30198 -15.03941 -14.84671 -14.63778 -14.30986 -13.92948 -13.89562 -13.58307 -13.42272 -13.37583 -13.12272 -13.05652 -12.78149 -12.40904 -12.11782 -12.02717 -11.80295 -11.70362 -11.59988 -11.49455 -11.36527 -10.57299 -10.33231 -10.11674 -10.00799 -9.83305 -9.30516 -8.45921 -5.94786 1.39187 1.41002 1.43167 1.55704 1.69150 1.95699 2.06293 2.19925 2.30600 2.95628 3.07579 3.21686 3.32320 3.54618 3.61791 3.95123 3.96856 4.02882 4.04493 4.34058 4.36647 4.48933 4.57260 4.59450 4.61434 4.66624 4.72583 4.81063 4.85321 5.00794 5.07638 5.28254 5.40672 5.41814 5.49031 5.89721 5.90078 6.11396 6.19628 6.28199 6.45148 6.53582 6.60718 7.13292 7.18176 7.50608 7.57275 8.12072 8.71392 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.052260 B = 0.001503 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.653382 B =18621.833650 C =18908.360235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.088 4.088 3 H 0.090 0.910 4 C 0.063 3.937 5 N -0.680 5.680 6 C 0.063 3.937 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.335 4.335 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.272 1.272 16 H -0.272 1.272 17 H -0.272 1.272 18 C 0.132 3.868 19 N -0.702 5.702 20 C 0.500 3.500 21 O -0.577 6.577 22 C 0.106 3.894 23 H 0.163 0.837 24 C 0.103 3.897 25 N -0.731 5.731 26 C 0.693 3.307 27 O -0.642 6.642 28 N -0.716 5.716 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.346 0.654 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.421 0.579 42 H 0.094 0.906 43 H 0.143 0.857 44 H 0.440 0.560 45 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.854 2.802 24.849 25.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 H 0.109 0.891 4 C -0.066 4.066 5 N -0.313 5.313 6 C -0.069 4.069 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.211 5.211 10 C -0.465 4.465 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.562 5.562 14 Si 0.817 3.183 15 H -0.197 1.197 16 H -0.197 1.197 17 H -0.196 1.196 18 C 0.007 3.993 19 N -0.356 5.356 20 C 0.285 3.715 21 O -0.456 6.456 22 C -0.004 4.004 23 H 0.180 0.820 24 C -0.021 4.021 25 N -0.394 5.394 26 C 0.391 3.609 27 O -0.524 6.524 28 N -0.377 5.377 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.166 0.834 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.259 0.741 42 H 0.112 0.888 43 H 0.160 0.840 44 H 0.283 0.717 45 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -5.068 2.861 25.369 26.028 hybrid contribution -0.320 -0.842 -1.062 1.392 sum -5.388 2.019 24.307 24.979 Atomic orbital electron populations 1.21902 0.93841 1.02241 1.02874 1.21207 0.96996 1.00730 0.91766 0.89141 1.21997 1.01160 0.94758 0.88712 1.60098 1.20875 1.49964 1.00377 1.21536 1.02187 0.95082 0.88130 1.20885 0.83923 0.87672 0.85007 1.90482 1.45848 1.28061 1.86472 1.41948 1.50085 1.24281 1.04794 1.19691 1.34505 1.06965 0.85291 0.90173 1.26041 0.96432 0.97549 1.01239 1.69672 1.38986 1.22460 1.25034 0.84920 0.78648 0.77816 0.76913 1.19719 1.19657 1.19633 1.21228 0.99744 0.95098 0.83219 1.45799 1.57014 1.28225 1.04538 1.21246 0.79222 0.85435 0.85592 1.90775 1.41448 1.26235 1.87101 1.22191 0.92726 1.01644 0.83829 0.81979 1.22622 0.93325 1.02442 0.83721 1.45070 1.06445 1.67615 1.20236 1.16217 0.83145 0.78120 0.83374 1.90961 1.80828 1.55095 1.25485 1.44883 1.09643 1.66976 1.16164 0.89896 0.93111 0.92683 0.90506 0.94337 0.83421 0.87956 0.91737 0.77016 0.91335 0.92113 0.91930 0.74066 0.88783 0.83976 0.71687 0.72415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.84 71.98 0.64 -1.07 16 2 C -0.09 -1.14 2.63 -10.80 -0.03 -1.17 16 3 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 4 C 0.06 1.19 5.14 86.31 0.44 1.64 16 5 N -0.68 -18.94 6.12 -517.93 -3.17 -22.11 16 6 C 0.06 2.04 6.17 85.56 0.53 2.56 16 7 C 0.44 20.13 7.82 87.66 0.69 20.82 16 8 O -0.62 -33.27 15.78 -3.08 -0.05 -33.32 16 9 N -0.57 -28.85 5.29 -306.98 -1.62 -30.47 16 10 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 11 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 12 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 13 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 14 Si 0.99 42.15 29.55 68.60 2.03 44.18 16 15 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 16 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 18 C 0.13 1.61 5.06 86.38 0.44 2.05 16 19 N -0.70 -5.05 5.28 -463.04 -2.45 -7.50 16 20 C 0.50 5.96 6.95 87.66 0.61 6.57 16 21 O -0.58 -13.61 16.57 -3.04 -0.05 -13.66 16 22 C 0.11 0.57 4.17 44.51 0.19 0.76 16 23 H 0.16 -0.48 8.14 -2.39 -0.02 -0.50 16 24 C 0.10 0.20 7.70 86.65 0.67 0.87 16 25 N -0.73 -7.22 6.37 -477.34 -3.04 -10.27 16 26 C 0.69 13.39 8.92 179.57 1.60 14.99 16 27 O -0.64 -19.33 18.05 -3.97 -0.07 -19.40 16 28 N -0.72 -9.85 5.61 -460.34 -2.58 -12.43 16 29 H 0.08 0.45 7.18 -2.38 -0.02 0.43 16 30 H 0.05 0.79 6.68 -2.39 -0.02 0.78 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.35 10.02 6.68 -89.69 -0.60 9.42 16 35 H 0.10 3.01 8.14 -2.38 -0.02 2.99 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 38 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 39 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.42 0.12 7.65 -92.71 -0.71 -0.59 16 42 H 0.09 0.13 7.72 -2.39 -0.02 0.11 16 43 H 0.14 -0.86 8.14 -2.39 -0.02 -0.88 16 44 H 0.44 3.03 8.96 -92.71 -0.83 2.20 16 45 H 0.43 5.96 8.96 -92.71 -0.83 5.13 16 Total: -1.00 -86.49 380.21 -6.30 -92.79 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -2.62 Total: 31.07 kcal Atomic # 6 Polarization: 22.86 SS G_CDS: 7.05 Total: 29.91 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -12.58 Total: -131.56 kcal Atomic # 8 Polarization: -66.21 SS G_CDS: -0.17 Total: -66.38 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -86.49 -6.30 -92.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753629643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.223 kcal (2) G-P(sol) polarization free energy of solvation -86.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds