Wall clock time and date at job start Tue Mar 31 2020 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46903 * 2 1 4 4 C 1.53002 * 109.46977 * 119.99412 * 2 1 3 5 5 N 1.46500 * 109.46618 * 175.00195 * 4 2 1 6 6 C 1.46503 * 120.00132 * 270.00133 * 5 4 2 7 7 C 1.36939 * 120.00190 * 90.00430 * 5 4 2 8 8 H 1.08004 * 119.99754 * 340.44548 * 7 5 4 9 9 C 1.38805 * 120.00251 * 160.16277 * 7 5 4 10 10 N 1.31617 * 120.00050 * 344.50867 * 9 7 5 11 11 Si 1.86801 * 120.00021 * 164.49887 * 9 7 5 12 12 H 1.48502 * 109.46962 * 90.00562 * 11 9 7 13 13 H 1.48498 * 109.47526 * 210.00421 * 11 9 7 14 14 H 1.48503 * 109.47416 * 330.00554 * 11 9 7 15 15 N 1.46487 * 109.47262 * 240.00116 * 2 1 3 16 16 C 1.34778 * 120.00479 * 84.99674 * 15 2 1 17 17 O 1.21283 * 119.99801 * 359.97438 * 16 15 2 18 18 C 1.50706 * 120.00079 * 180.02562 * 16 15 2 19 19 C 1.52999 * 109.46924 * 179.97438 * 18 16 15 20 20 C 1.52994 * 109.47043 * 179.97438 * 19 18 16 21 21 N 1.46503 * 109.47123 * 179.97438 * 20 19 18 22 22 C 1.36372 * 125.96230 * 269.69074 * 21 20 19 23 23 O 1.35622 * 125.99217 * 0.03637 * 22 21 20 24 24 N 1.30918 * 108.01822 * 179.88800 * 22 21 20 25 25 N 1.40113 * 107.94198 * 0.37280 * 24 22 21 26 26 C 1.30913 * 107.93852 * 359.76493 * 25 24 22 27 27 O 1.35627 * 125.98200 * 179.97438 * 26 25 24 28 28 H 1.08995 * 109.47378 * 60.00126 * 1 2 3 29 29 H 1.08998 * 109.46878 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47401 * 300.00238 * 1 2 3 31 31 H 1.09001 * 109.46919 * 55.00925 * 4 2 1 32 32 H 1.08991 * 109.47393 * 295.00038 * 4 2 1 33 33 H 1.09001 * 109.47084 * 264.86777 * 6 5 4 34 34 H 1.08995 * 109.46838 * 24.86829 * 6 5 4 35 35 H 1.08999 * 109.46901 * 144.87342 * 6 5 4 36 36 H 0.97007 * 119.99828 * 179.97438 * 10 9 7 37 37 H 0.97004 * 119.99999 * 264.99984 * 15 2 1 38 38 H 1.08998 * 109.46586 * 299.99512 * 18 16 15 39 39 H 1.08994 * 109.47188 * 60.00073 * 18 16 15 40 40 H 1.08996 * 109.47115 * 299.99994 * 19 18 16 41 41 H 1.09003 * 109.47323 * 59.99951 * 19 18 16 42 42 H 1.09006 * 109.47388 * 300.00007 * 20 19 18 43 43 H 1.08997 * 109.47402 * 60.00445 * 20 19 18 44 44 H 0.96697 * 114.00053 * 89.99705 * 23 22 21 45 45 H 0.96698 * 114.00100 * 270.01954 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1906 6 6 4.1259 -1.9918 0.5613 7 6 4.2798 0.1651 1.7240 8 1 3.8624 1.1459 1.8978 9 6 5.6051 -0.0923 2.0468 10 7 6.0321 -1.3343 2.1333 11 14 6.7826 1.3240 2.3581 12 1 6.7598 1.6789 3.7999 13 1 8.1576 0.9191 1.9698 14 1 6.3667 2.4999 1.5521 15 7 2.0183 -0.6905 -1.1961 16 6 2.1470 -0.0182 -2.3571 17 8 1.8581 1.1584 -2.4117 18 6 2.6489 -0.7289 -3.5877 19 6 2.6998 0.2541 -4.7591 20 6 3.2099 -0.4672 -6.0082 21 7 3.2581 0.4739 -7.1300 22 6 2.2499 0.7165 -8.0156 23 8 1.0272 0.1297 -8.0118 24 7 2.6680 1.6177 -8.8683 25 7 3.9837 1.9575 -8.5267 26 6 4.3211 1.2557 -7.4743 27 8 5.5183 1.2984 -6.8384 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6054 -1.7197 1.2952 32 1 1.7516 -0.1582 2.1370 33 1 4.3655 -2.7320 1.3247 34 1 3.4375 -2.4268 -0.1632 35 1 5.0403 -1.6837 0.0543 36 1 6.9583 -1.5142 2.3585 37 1 2.2490 -1.6317 -1.1525 38 1 3.6480 -1.1213 -3.3985 39 1 1.9760 -1.5507 -3.8325 40 1 1.7005 0.6462 -4.9480 41 1 3.3725 1.0762 -4.5145 42 1 4.2093 -0.8590 -5.8190 43 1 2.5376 -1.2895 -6.2530 44 1 0.3664 0.6010 -7.4862 45 1 6.1676 0.6683 -7.1796 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754313642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:33 Heat of formation + Delta-G solvation = -4.593110 kcal Electronic energy + Delta-G solvation = -28196.294687 eV Core-core repulsion = 24059.704621 eV Total energy + Delta-G solvation = -4136.590066 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.54849 -39.60527 -38.48684 -37.39918 -36.74057 -35.81072 -34.15987 -32.68958 -31.33512 -30.33360 -29.86654 -27.33846 -26.29753 -25.69058 -23.34466 -23.06227 -22.12782 -21.69013 -20.38688 -20.01499 -19.13586 -18.98641 -17.26700 -16.98212 -16.86630 -16.37060 -15.94770 -15.72107 -15.42785 -15.05714 -14.44869 -14.21976 -13.76199 -13.70799 -13.45683 -13.25788 -13.00334 -12.90052 -12.70880 -12.52006 -12.16513 -12.10780 -12.01691 -11.57282 -11.49367 -11.39490 -11.22080 -10.88381 -10.79923 -10.71987 -10.69661 -10.31114 -10.27905 -10.08799 -9.91871 -9.73246 -9.54513 -8.74345 -8.52210 -6.85772 -5.80602 -3.23512 1.21859 1.43555 1.93569 2.92106 2.92573 3.34245 3.35267 3.41636 3.45699 3.60636 4.08226 4.43553 4.46474 4.60501 4.79631 4.89493 4.94208 5.00566 5.13003 5.24314 5.32174 5.38725 5.40513 5.55541 5.70799 5.72585 5.81149 5.86147 5.90692 6.00121 6.09596 6.35501 6.44638 6.49640 6.69990 6.71126 6.98028 7.00038 7.21702 7.57270 7.59327 7.74151 7.88191 8.29248 8.56305 9.15209 9.78366 10.24572 11.24601 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.013119 B = 0.002889 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.834508 B = 9688.746633 C =11047.453615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.083 0.917 4 C 0.143 3.857 5 N -0.599 5.599 6 C 0.168 3.832 7 C -0.253 4.253 8 H 0.068 0.932 9 C 0.002 3.998 10 N -0.909 5.909 11 Si 0.901 3.099 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.280 1.280 15 N -0.702 5.702 16 C 0.512 3.488 17 O -0.552 6.552 18 C -0.138 4.138 19 C -0.117 4.117 20 C 0.099 3.901 21 N -0.509 5.509 22 C 0.406 3.594 23 O -0.437 6.437 24 N -0.299 5.299 25 N -0.299 5.299 26 C 0.409 3.591 27 O -0.432 6.432 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.062 0.938 33 H 0.030 0.970 34 H -0.008 1.008 35 H 0.043 0.957 36 H 0.252 0.748 37 H 0.397 0.603 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.413 0.587 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.316 -4.603 -15.573 18.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.102 0.898 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.024 3.976 7 C -0.383 4.383 8 H 0.086 0.914 9 C -0.196 4.196 10 N -0.554 5.554 11 Si 0.731 3.269 12 H -0.214 1.214 13 H -0.216 1.216 14 H -0.205 1.205 15 N -0.353 5.353 16 C 0.297 3.703 17 O -0.430 6.430 18 C -0.179 4.179 19 C -0.155 4.155 20 C -0.024 4.024 21 N -0.228 5.228 22 C 0.096 3.904 23 O -0.238 6.238 24 N -0.143 5.143 25 N -0.144 5.144 26 C 0.099 3.901 27 O -0.232 6.232 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.010 0.990 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.233 0.767 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.272 0.728 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -8.268 -2.831 -16.751 18.893 hybrid contribution 0.855 -0.858 1.618 2.021 sum -7.413 -3.689 -15.132 17.250 Atomic orbital electron populations 1.22116 0.96553 1.01226 1.01766 1.21915 0.92077 0.98948 0.86215 0.89837 1.21048 0.85846 0.97529 0.94163 1.43846 0.99082 1.22774 1.66412 1.20813 0.94063 0.88983 0.93788 1.19167 0.92701 0.90510 1.35877 0.91384 1.24908 0.98482 0.96119 1.00104 1.70078 1.15751 1.17043 1.52540 0.86307 0.80562 0.81988 0.78028 1.21408 1.21573 1.20524 1.46040 1.65956 1.13930 1.09403 1.20347 0.77848 0.87321 0.84746 1.90682 1.50973 1.16042 1.85341 1.21540 1.03874 0.99171 0.93307 1.21638 1.03259 0.98846 0.91804 1.22067 1.04829 0.91073 0.84396 1.47159 1.13478 1.35808 1.26378 1.21312 0.85416 0.94390 0.89289 1.84911 1.14814 1.50966 1.73072 1.78354 1.03272 1.11485 1.21208 1.78373 1.04597 1.21408 1.10005 1.21359 0.84850 0.91842 0.92014 1.85020 1.17643 1.62331 1.58193 0.93009 0.93065 0.91939 0.94125 0.91925 0.95192 0.99014 0.93870 0.93783 0.76741 0.88334 0.88892 0.90807 0.89847 0.88209 0.88018 0.72791 0.73006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.48 37.16 0.35 -1.77 16 2 C 0.12 1.92 2.88 -67.94 -0.20 1.72 16 3 H 0.08 1.68 7.58 -51.92 -0.39 1.29 16 4 C 0.14 2.62 5.29 -4.04 -0.02 2.60 16 5 N -0.60 -13.82 2.78 -181.12 -0.50 -14.32 16 6 C 0.17 3.69 8.52 59.85 0.51 4.20 16 7 C -0.25 -6.71 9.67 -15.06 -0.15 -6.86 16 8 H 0.07 1.81 7.88 -52.48 -0.41 1.39 16 9 C 0.00 0.05 5.06 -17.43 -0.09 -0.04 16 10 N -0.91 -25.49 10.67 55.49 0.59 -24.90 16 11 Si 0.90 21.66 29.58 -169.99 -5.03 16.63 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 N -0.70 -10.43 4.52 -53.81 -0.24 -10.68 16 16 C 0.51 7.57 7.79 -10.98 -0.09 7.48 16 17 O -0.55 -10.37 15.65 5.55 0.09 -10.29 16 18 C -0.14 -1.30 5.70 -27.88 -0.16 -1.46 16 19 C -0.12 -1.09 4.83 -26.73 -0.13 -1.22 16 20 C 0.10 0.66 6.01 -4.04 -0.02 0.64 16 21 N -0.51 -4.74 2.76 -120.05 -0.33 -5.07 16 22 C 0.41 4.21 9.15 -88.80 -0.81 3.40 16 23 O -0.44 -3.19 13.57 -18.56 -0.25 -3.45 16 24 N -0.30 -4.03 12.72 29.66 0.38 -3.65 16 25 N -0.30 -4.11 12.72 29.66 0.38 -3.74 16 26 C 0.41 4.48 9.15 -88.80 -0.81 3.66 16 27 O -0.43 -3.71 13.58 -18.58 -0.25 -3.96 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 32 H 0.06 1.17 8.04 -51.93 -0.42 0.75 16 33 H 0.03 0.73 7.41 -51.93 -0.38 0.35 16 34 H -0.01 -0.15 5.76 -51.93 -0.30 -0.45 16 35 H 0.04 1.04 7.19 -51.93 -0.37 0.67 16 36 H 0.25 6.90 8.31 -40.82 -0.34 6.57 16 37 H 0.40 5.26 6.20 -40.82 -0.25 5.00 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 41 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.41 1.12 9.06 45.56 0.41 1.53 16 45 H 0.41 1.16 9.06 45.56 0.41 1.57 16 LS Contribution 381.17 15.07 5.74 5.74 Total: -1.00 -37.14 381.17 -6.11 -43.25 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.06 Total: 2.06 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: -1.61 Total: 12.37 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: 0.27 Total: -62.36 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.42 Total: -17.70 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.14 -6.11 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754313642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.654 kcal (2) G-P(sol) polarization free energy of solvation -37.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds