Wall clock time and date at job start Tue Mar 31 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46903 * 2 1 4 4 C 1.53002 * 109.46977 * 119.99412 * 2 1 3 5 5 N 1.46500 * 109.46618 * 175.00195 * 4 2 1 6 6 C 1.46503 * 120.00132 * 270.00133 * 5 4 2 7 7 C 1.36939 * 120.00190 * 90.00430 * 5 4 2 8 8 H 1.08004 * 119.99754 * 340.44548 * 7 5 4 9 9 C 1.38805 * 120.00251 * 160.16277 * 7 5 4 10 10 N 1.31617 * 120.00050 * 344.50867 * 9 7 5 11 11 Si 1.86801 * 120.00021 * 164.49887 * 9 7 5 12 12 H 1.48502 * 109.46962 * 90.00562 * 11 9 7 13 13 H 1.48498 * 109.47526 * 210.00421 * 11 9 7 14 14 H 1.48503 * 109.47416 * 330.00554 * 11 9 7 15 15 N 1.46487 * 109.47262 * 240.00116 * 2 1 3 16 16 C 1.34778 * 120.00479 * 84.99674 * 15 2 1 17 17 O 1.21283 * 119.99801 * 359.97438 * 16 15 2 18 18 C 1.50706 * 120.00079 * 180.02562 * 16 15 2 19 19 C 1.52999 * 109.46924 * 179.97438 * 18 16 15 20 20 C 1.52994 * 109.47043 * 179.97438 * 19 18 16 21 21 N 1.46503 * 109.47123 * 179.97438 * 20 19 18 22 22 C 1.36372 * 125.96230 * 269.69074 * 21 20 19 23 23 O 1.35622 * 125.99217 * 0.03637 * 22 21 20 24 24 N 1.30918 * 108.01822 * 179.88800 * 22 21 20 25 25 N 1.40113 * 107.94198 * 0.37280 * 24 22 21 26 26 C 1.30913 * 107.93852 * 359.76493 * 25 24 22 27 27 O 1.35627 * 125.98200 * 179.97438 * 26 25 24 28 28 H 1.08995 * 109.47378 * 60.00126 * 1 2 3 29 29 H 1.08998 * 109.46878 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47401 * 300.00238 * 1 2 3 31 31 H 1.09001 * 109.46919 * 55.00925 * 4 2 1 32 32 H 1.08991 * 109.47393 * 295.00038 * 4 2 1 33 33 H 1.09001 * 109.47084 * 264.86777 * 6 5 4 34 34 H 1.08995 * 109.46838 * 24.86829 * 6 5 4 35 35 H 1.08999 * 109.46901 * 144.87342 * 6 5 4 36 36 H 0.97007 * 119.99828 * 179.97438 * 10 9 7 37 37 H 0.97004 * 119.99999 * 264.99984 * 15 2 1 38 38 H 1.08998 * 109.46586 * 299.99512 * 18 16 15 39 39 H 1.08994 * 109.47188 * 60.00073 * 18 16 15 40 40 H 1.08996 * 109.47115 * 299.99994 * 19 18 16 41 41 H 1.09003 * 109.47323 * 59.99951 * 19 18 16 42 42 H 1.09006 * 109.47388 * 300.00007 * 20 19 18 43 43 H 1.08997 * 109.47402 * 60.00445 * 20 19 18 44 44 H 0.96697 * 114.00053 * 89.99705 * 23 22 21 45 45 H 0.96698 * 114.00100 * 270.01954 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1906 6 6 4.1259 -1.9918 0.5613 7 6 4.2798 0.1651 1.7240 8 1 3.8624 1.1459 1.8978 9 6 5.6051 -0.0923 2.0468 10 7 6.0321 -1.3343 2.1333 11 14 6.7826 1.3240 2.3581 12 1 6.7598 1.6789 3.7999 13 1 8.1576 0.9191 1.9698 14 1 6.3667 2.4999 1.5521 15 7 2.0183 -0.6905 -1.1961 16 6 2.1470 -0.0182 -2.3571 17 8 1.8581 1.1584 -2.4117 18 6 2.6489 -0.7289 -3.5877 19 6 2.6998 0.2541 -4.7591 20 6 3.2099 -0.4672 -6.0082 21 7 3.2581 0.4739 -7.1300 22 6 2.2499 0.7165 -8.0156 23 8 1.0272 0.1297 -8.0118 24 7 2.6680 1.6177 -8.8683 25 7 3.9837 1.9575 -8.5267 26 6 4.3211 1.2557 -7.4743 27 8 5.5183 1.2984 -6.8384 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6054 -1.7197 1.2952 32 1 1.7516 -0.1582 2.1370 33 1 4.3655 -2.7320 1.3247 34 1 3.4375 -2.4268 -0.1632 35 1 5.0403 -1.6837 0.0543 36 1 6.9583 -1.5142 2.3585 37 1 2.2490 -1.6317 -1.1525 38 1 3.6480 -1.1213 -3.3985 39 1 1.9760 -1.5507 -3.8325 40 1 1.7005 0.6462 -4.9480 41 1 3.3725 1.0762 -4.5145 42 1 4.2093 -0.8590 -5.8190 43 1 2.5376 -1.2895 -6.2530 44 1 0.3664 0.6010 -7.4862 45 1 6.1676 0.6683 -7.1796 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754313642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:32 Heat of formation + Delta-G solvation = -38.668258 kcal Electronic energy + Delta-G solvation = -28197.772296 eV Core-core repulsion = 24059.704621 eV Total energy + Delta-G solvation = -4138.067676 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 327.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.31252 -40.80576 -39.13481 -38.19816 -38.04317 -36.67234 -35.74892 -33.61594 -32.99027 -31.73078 -30.68624 -28.16826 -27.94218 -27.42029 -24.30099 -23.83566 -23.34547 -22.71125 -21.75395 -21.18338 -19.83226 -19.65739 -18.79379 -18.19292 -17.71389 -17.26353 -16.98098 -16.92860 -16.58409 -16.37044 -15.60296 -15.29262 -15.26597 -14.95019 -14.76406 -14.44018 -13.99577 -13.80579 -13.58219 -13.53354 -13.36522 -13.21111 -13.04175 -12.89527 -12.79314 -12.75354 -12.49814 -12.35334 -12.28109 -12.00993 -11.95934 -11.86330 -11.76491 -11.52152 -11.09378 -10.77116 -10.63121 -10.55878 -9.91369 -8.76564 -7.84512 -5.27703 0.50923 0.73722 1.13813 1.41469 1.44653 1.52855 1.79358 2.21597 2.37855 2.49271 2.90541 3.27822 3.50346 3.63806 3.71738 3.89756 4.04850 4.10278 4.18547 4.31021 4.37442 4.38816 4.45970 4.52352 4.66720 4.70880 4.75563 4.80596 4.95292 5.01038 5.03121 5.15310 5.19198 5.31189 5.33188 5.43672 5.61578 5.73230 5.78478 6.23878 6.31200 6.45647 6.73358 6.79575 7.16208 7.43242 7.89235 8.27414 9.17301 Molecular weight = 327.17amu Principal moments of inertia in cm(-1) A = 0.013119 B = 0.002889 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.834508 B = 9688.746633 C =11047.453615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.125 3.875 3 H 0.039 0.961 4 C 0.142 3.858 5 N -0.613 5.613 6 C 0.181 3.819 7 C -0.257 4.257 8 H 0.059 0.941 9 C -0.046 4.046 10 N -0.931 5.931 11 Si 0.954 3.046 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.283 1.283 15 N -0.700 5.700 16 C 0.502 3.498 17 O -0.600 6.600 18 C -0.126 4.126 19 C -0.109 4.109 20 C 0.103 3.897 21 N -0.504 5.504 22 C 0.419 3.581 23 O -0.432 6.432 24 N -0.343 5.343 25 N -0.344 5.344 26 C 0.416 3.584 27 O -0.438 6.438 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.002 0.998 34 H 0.043 0.957 35 H 0.013 0.987 36 H 0.248 0.752 37 H 0.407 0.593 38 H 0.113 0.887 39 H 0.137 0.863 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.121 0.879 43 H 0.132 0.868 44 H 0.434 0.566 45 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.441 -6.668 -16.103 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.017 3.983 3 H 0.057 0.943 4 C 0.015 3.985 5 N -0.336 5.336 6 C 0.036 3.964 7 C -0.388 4.388 8 H 0.077 0.923 9 C -0.242 4.242 10 N -0.579 5.579 11 Si 0.783 3.217 12 H -0.212 1.212 13 H -0.216 1.216 14 H -0.209 1.209 15 N -0.352 5.352 16 C 0.290 3.710 17 O -0.481 6.481 18 C -0.166 4.166 19 C -0.148 4.148 20 C -0.018 4.018 21 N -0.224 5.224 22 C 0.107 3.893 23 O -0.236 6.236 24 N -0.188 5.188 25 N -0.189 5.189 26 C 0.105 3.895 27 O -0.242 6.242 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.020 0.980 34 H 0.061 0.939 35 H 0.032 0.968 36 H 0.057 0.943 37 H 0.245 0.755 38 H 0.131 0.869 39 H 0.155 0.845 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.139 0.861 43 H 0.150 0.850 44 H 0.296 0.704 45 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -9.421 -4.928 -17.274 20.284 hybrid contribution 1.116 -0.223 1.843 2.166 sum -8.305 -5.152 -15.431 18.266 Atomic orbital electron populations 1.21991 0.93705 1.02880 1.01827 1.21556 0.94133 0.96328 0.86242 0.94283 1.21214 0.83307 0.99180 0.94772 1.44052 1.00874 1.22300 1.66403 1.20591 0.94214 0.87899 0.93653 1.19366 0.93365 0.91119 1.34927 0.92347 1.25483 0.99764 0.97867 1.01061 1.70204 1.15574 1.18149 1.53928 0.85480 0.78830 0.79633 0.77730 1.21156 1.21618 1.20892 1.46006 1.65890 1.14292 1.09009 1.21327 0.76760 0.86953 0.85970 1.90667 1.52964 1.18361 1.86157 1.21560 1.05316 0.99513 0.90254 1.21513 1.02069 0.98080 0.93175 1.22249 1.06840 0.90569 0.82164 1.47209 1.12689 1.35853 1.26619 1.21338 0.86255 0.93110 0.88552 1.84892 1.14098 1.50877 1.73717 1.78230 1.03661 1.13634 1.23247 1.78247 1.05291 1.23271 1.12088 1.21393 0.85665 0.91187 0.91244 1.84986 1.17501 1.63590 1.58127 0.93731 0.90498 0.91167 0.91192 0.92654 0.97980 0.93884 0.96803 0.94285 0.75544 0.86914 0.84519 0.91494 0.93658 0.86056 0.84952 0.70362 0.70184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.48 71.98 0.68 -2.89 16 2 C 0.13 4.00 2.88 44.99 0.13 4.13 16 3 H 0.04 1.60 7.58 -2.38 -0.02 1.59 16 4 C 0.14 4.99 5.29 86.38 0.46 5.45 16 5 N -0.61 -27.87 2.78 -726.94 -2.02 -29.90 16 6 C 0.18 7.71 8.52 127.77 1.09 8.80 16 7 C -0.26 -13.72 9.67 84.03 0.81 -12.91 16 8 H 0.06 3.16 7.88 -2.91 -0.02 3.14 16 9 C -0.05 -2.54 5.06 84.86 0.43 -2.11 16 10 N -0.93 -52.66 10.67 21.65 0.23 -52.43 16 11 Si 0.95 45.04 29.58 68.60 2.03 47.07 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 14 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 15 N -0.70 -19.21 4.52 -442.54 -2.00 -21.21 16 16 C 0.50 13.99 7.79 87.66 0.68 14.67 16 17 O -0.60 -22.61 15.65 -3.04 -0.05 -22.66 16 18 C -0.13 -1.94 5.70 29.85 0.17 -1.77 16 19 C -0.11 -1.80 4.83 30.59 0.15 -1.66 16 20 C 0.10 1.02 6.01 86.38 0.52 1.54 16 21 N -0.50 -8.49 2.76 -755.17 -2.08 -10.57 16 22 C 0.42 8.12 9.15 179.71 1.65 9.77 16 23 O -0.43 -5.29 13.57 -89.34 -1.21 -6.50 16 24 N -0.34 -9.29 12.72 -173.65 -2.21 -11.49 16 25 N -0.34 -9.59 12.72 -173.65 -2.21 -11.80 16 26 C 0.42 8.80 9.15 179.71 1.65 10.45 16 27 O -0.44 -7.05 13.58 -89.40 -1.21 -8.27 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 32 H 0.06 2.02 8.04 -2.39 -0.02 2.00 16 33 H 0.00 0.09 7.41 -2.39 -0.02 0.07 16 34 H 0.04 1.35 5.76 -2.39 -0.01 1.34 16 35 H 0.01 0.64 7.19 -2.39 -0.02 0.62 16 36 H 0.25 13.71 8.31 -92.70 -0.77 12.94 16 37 H 0.41 9.26 6.20 -92.70 -0.58 8.69 16 38 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 1.19 8.10 -2.39 -0.02 1.17 16 41 H 0.04 1.11 8.10 -2.39 -0.02 1.09 16 42 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.43 1.29 9.06 -74.06 -0.67 0.62 16 45 H 0.44 1.73 9.06 -74.06 -0.67 1.06 16 Total: -1.00 -84.79 381.17 -3.20 -87.99 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -0.87 Total: 6.28 kcal Atomic # 6 Polarization: 25.07 SS G_CDS: 8.41 Total: 33.48 kcal Atomic # 7 Polarization: -127.11 SS G_CDS: -10.29 Total: -137.41 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -2.47 Total: -37.42 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -84.79 -3.20 -87.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754313642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.319 kcal (2) G-P(sol) polarization free energy of solvation -84.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds