Wall clock time and date at job start Tue Mar 31 2020 04:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47421 * 2 1 4 4 C 1.52995 * 109.47191 * 239.99484 * 2 1 3 5 5 N 1.46896 * 109.47130 * 184.49482 * 4 2 1 6 6 C 1.47018 * 110.99912 * 170.27327 * 5 4 2 7 7 C 1.53099 * 109.25651 * 182.34968 * 6 5 4 8 8 O 1.43009 * 109.29751 * 303.22017 * 7 6 5 9 9 C 1.43016 * 113.73679 * 58.64474 * 8 7 6 10 10 C 1.47015 * 111.00109 * 293.95451 * 5 4 2 11 11 N 1.46504 * 109.47073 * 119.99485 * 2 1 3 12 12 C 1.34775 * 119.99980 * 279.07537 * 11 2 1 13 13 O 1.21354 * 120.00181 * 359.97438 * 12 11 2 14 14 C 1.49456 * 119.99956 * 180.02562 * 12 11 2 15 15 O 1.21347 * 119.99960 * 359.97438 * 14 12 11 16 16 N 1.34775 * 119.99956 * 179.97438 * 14 12 11 17 17 C 1.46494 * 119.99912 * 180.02562 * 16 14 12 18 18 C 1.52999 * 109.47321 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47188 * 179.97438 * 18 17 16 20 20 C 1.50707 * 109.47084 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99690 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00220 * 180.02562 * 20 19 18 23 23 N 1.31505 * 120.00118 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99866 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46979 * 89.99910 * 24 22 20 26 26 H 1.48495 * 109.47011 * 210.00142 * 24 22 20 27 27 H 1.48501 * 109.46795 * 330.00072 * 24 22 20 28 28 H 1.08995 * 109.47000 * 60.00207 * 1 2 3 29 29 H 1.08993 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46835 * 300.00766 * 1 2 3 31 31 H 1.09001 * 109.47389 * 64.49608 * 4 2 1 32 32 H 1.08999 * 109.47285 * 304.49708 * 4 2 1 33 33 H 1.09002 * 109.46957 * 62.43930 * 6 5 4 34 34 H 1.08996 * 109.54526 * 302.30652 * 6 5 4 35 35 H 1.09000 * 109.50512 * 183.26201 * 7 6 5 36 36 H 1.08997 * 109.50304 * 63.17867 * 7 6 5 37 37 H 1.08999 * 109.50467 * 61.27136 * 9 8 7 38 38 H 1.09008 * 109.50588 * 181.35246 * 9 8 7 39 39 H 1.09001 * 109.50412 * 57.67419 * 10 5 4 40 40 H 1.08999 * 109.54313 * 297.56446 * 10 5 4 41 41 H 0.96998 * 120.00018 * 99.07188 * 11 2 1 42 42 H 0.96998 * 120.00001 * 359.97438 * 16 14 12 43 43 H 1.09007 * 109.47076 * 299.99434 * 17 16 14 44 44 H 1.09001 * 109.47679 * 59.99639 * 17 16 14 45 45 H 1.08994 * 109.47278 * 299.99878 * 18 17 16 46 46 H 1.09000 * 109.47190 * 59.99782 * 18 17 16 47 47 H 1.08998 * 109.47516 * 299.99611 * 19 18 17 48 48 H 1.09001 * 109.47507 * 60.00021 * 19 18 17 49 49 H 0.97006 * 120.00433 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5050 -0.8160 -1.1961 6 6 4.0146 -1.6989 -2.2555 7 6 5.5358 -1.8153 -2.1274 8 8 6.1161 -0.5095 -2.1839 9 6 5.6425 0.3756 -1.1653 10 6 4.1226 0.5152 -1.2843 11 7 2.0184 -0.6905 1.1963 12 6 2.0694 -0.0406 2.3759 13 8 1.7113 1.1167 2.4470 14 6 2.5681 -0.7449 3.5961 15 8 2.9267 -1.9020 3.5249 16 7 2.6197 -0.0948 4.7756 17 6 3.1090 -0.7849 5.9715 18 6 3.0655 0.1707 7.1656 19 6 3.5760 -0.5503 8.4147 20 6 3.5325 0.3908 9.5910 21 1 3.1768 1.4022 9.4605 22 6 3.9479 -0.0389 10.8335 23 7 3.9104 0.7825 11.8598 24 14 4.5638 -1.7880 11.0590 25 1 6.0303 -1.8298 10.8289 26 1 4.2663 -2.2432 12.4408 27 1 3.8845 -2.6812 10.0865 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.7440 -0.1632 -2.1374 32 1 1.6124 -1.7231 -1.2903 33 1 3.7624 -1.2803 -3.2298 34 1 3.5643 -2.6864 -2.1552 35 1 5.9244 -2.4221 -2.9452 36 1 5.7860 -2.2840 -1.1757 37 1 5.8953 -0.0290 -0.1853 38 1 6.1091 1.3532 -1.2868 39 1 3.7503 1.1434 -0.4750 40 1 3.8728 0.9702 -2.2427 41 1 2.3049 -1.6155 1.1393 42 1 2.3334 0.8303 4.8324 43 1 2.4783 -1.6504 6.1752 44 1 4.1352 -1.1138 5.8071 45 1 3.6963 1.0358 6.9617 46 1 2.0395 0.4999 7.3303 47 1 2.9448 -1.4153 8.6185 48 1 4.6019 -0.8799 8.2504 49 1 4.2029 0.4803 12.7339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340260004.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:38 Heat of formation + Delta-G solvation = -120.709786 kcal Electronic energy + Delta-G solvation = -27994.388394 eV Core-core repulsion = 23956.303474 eV Total energy + Delta-G solvation = -4038.084920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.78894 -39.99082 -38.67054 -37.09631 -35.78160 -34.86802 -33.32085 -31.69181 -31.47614 -31.43839 -28.51399 -27.64772 -25.40186 -24.56232 -24.51488 -22.60058 -21.33968 -20.85028 -20.60859 -20.09348 -18.42622 -17.15347 -17.08335 -16.72932 -16.53530 -16.10606 -15.84873 -15.54692 -15.43064 -15.21436 -14.95500 -14.88175 -14.50095 -14.19489 -13.81035 -13.62819 -13.48534 -13.09104 -12.75382 -12.71759 -12.55612 -12.27786 -12.10990 -12.05791 -11.95932 -11.82169 -11.64881 -11.28150 -11.10310 -10.94506 -10.91531 -10.16470 -10.11353 -9.96809 -9.77796 -9.49354 -9.43423 -9.23554 -9.03646 -8.94886 -8.56029 -6.06347 -4.05275 1.43408 2.33522 3.13018 3.24165 3.30814 3.38431 3.42020 3.45194 3.67561 4.11700 4.41219 4.43146 4.43864 4.50785 4.59761 4.69290 4.75824 4.76455 4.86439 4.95119 5.07673 5.12549 5.19354 5.25515 5.27403 5.32251 5.39385 5.45653 5.51944 5.52815 5.58223 5.77671 5.94508 6.05750 6.19068 6.36749 6.38470 6.39902 6.56230 6.70845 6.74799 6.96010 7.20751 7.34041 7.41103 7.74646 7.75423 8.04010 8.50094 8.97751 9.55511 11.06852 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.002105 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.607790 B =13299.647518 C =14097.525809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.145 3.855 3 H 0.089 0.911 4 C 0.045 3.955 5 N -0.535 5.535 6 C 0.019 3.981 7 C 0.062 3.938 8 O -0.386 6.386 9 C 0.063 3.937 10 C 0.016 3.984 11 N -0.684 5.684 12 C 0.509 3.491 13 O -0.525 6.525 14 C 0.501 3.499 15 O -0.526 6.526 16 N -0.693 5.693 17 C 0.112 3.888 18 C -0.115 4.115 19 C -0.010 4.010 20 C -0.522 4.522 21 H 0.072 0.928 22 C 0.066 3.934 23 N -0.902 5.902 24 Si 0.880 3.120 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.264 1.264 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.415 0.585 42 H 0.412 0.588 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.019 0.981 48 H 0.015 0.985 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 -4.093 -33.326 33.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.040 3.960 3 H 0.107 0.893 4 C -0.083 4.083 5 N -0.260 5.260 6 C -0.109 4.109 7 C -0.015 4.015 8 O -0.305 6.305 9 C -0.014 4.014 10 C -0.112 4.112 11 N -0.337 5.337 12 C 0.290 3.710 13 O -0.401 6.401 14 C 0.281 3.719 15 O -0.403 6.403 16 N -0.345 5.345 17 C -0.010 4.010 18 C -0.153 4.153 19 C -0.048 4.048 20 C -0.560 4.560 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.541 5.541 24 Si 0.707 3.293 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.189 1.189 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.062 0.938 41 H 0.252 0.748 42 H 0.248 0.752 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.037 0.963 48 H 0.033 0.967 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.890 -4.234 -32.811 33.209 hybrid contribution -0.150 -0.561 -0.271 0.641 sum -3.040 -4.795 -33.082 33.566 Atomic orbital electron populations 1.22171 0.94282 1.02730 1.03228 1.21044 0.94201 0.97361 0.83344 0.89312 1.22480 0.87628 1.01712 0.96471 1.62158 1.05391 1.11560 1.46876 1.22796 0.96972 0.98152 0.93002 1.22667 0.91152 0.84974 1.02682 1.87993 1.66323 1.22860 1.53278 1.22671 0.92268 0.94562 0.91890 1.22851 0.96175 0.90646 1.01574 1.45623 1.64061 1.17113 1.06898 1.20278 0.79147 0.86699 0.84884 1.90756 1.47304 1.16533 1.85540 1.20058 0.80237 0.86898 0.84753 1.90754 1.47531 1.16489 1.85513 1.46009 1.63326 1.17058 1.08074 1.21827 0.99635 0.96452 0.83120 1.21735 1.02042 0.97979 0.93533 1.19505 0.95931 0.96588 0.92820 1.21092 1.43641 0.99510 0.91794 0.90944 1.25032 0.95136 0.97417 0.95926 1.69909 1.48030 1.35655 1.00521 0.86771 0.79562 0.85503 0.77427 1.20246 1.21380 1.18900 0.91356 0.91994 0.91201 0.92725 0.89540 0.93876 0.89384 0.88420 0.91959 0.91975 0.88309 0.89314 0.93768 0.74775 0.75216 0.91180 0.91181 0.91843 0.91825 0.96254 0.96683 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 9.42 37.16 0.35 -0.74 16 2 C 0.15 1.05 2.32 -67.93 -0.16 0.90 16 3 H 0.09 0.75 6.29 -51.93 -0.33 0.42 16 4 C 0.05 0.25 4.49 -3.83 -0.02 0.23 16 5 N -0.53 -3.60 4.46 -234.31 -1.05 -4.65 16 6 C 0.02 0.11 5.65 -3.71 -0.02 0.09 16 7 C 0.06 0.42 7.01 37.21 0.26 0.68 16 8 O -0.39 -3.49 10.83 -35.23 -0.38 -3.88 16 9 C 0.06 0.49 7.01 37.21 0.26 0.75 16 10 C 0.02 0.11 5.43 -3.71 -0.02 0.09 16 11 N -0.68 -6.41 4.85 -54.23 -0.26 -6.67 16 12 C 0.51 6.29 7.80 -11.58 -0.09 6.20 16 13 O -0.53 -7.39 15.96 5.49 0.09 -7.30 16 14 C 0.50 7.15 7.89 -11.58 -0.09 7.06 16 15 O -0.53 -8.56 16.48 5.50 0.09 -8.47 16 16 N -0.69 -9.92 5.55 -60.73 -0.34 -10.26 16 17 C 0.11 1.80 5.67 -4.05 -0.02 1.78 16 18 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 19 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 20 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 21 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 22 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 23 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 24 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16 31 H 0.05 0.25 8.12 -51.93 -0.42 -0.17 16 32 H 0.09 0.39 8.04 -51.93 -0.42 -0.03 16 33 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.09 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.09 0.68 6.47 -51.93 -0.34 0.34 16 40 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.42 3.79 8.04 -40.82 -0.33 3.46 16 42 H 0.41 5.44 7.94 -40.82 -0.32 5.12 16 43 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 48 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 49 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 397.09 15.07 5.98 5.98 Total: -1.00 -33.10 397.09 -8.40 -41.51 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -8.41 Total: 2.51 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -0.23 Total: 1.24 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.87 Total: -48.51 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.20 Total: -19.65 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.10 -8.40 -41.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340260004.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.203 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds