Wall clock time and date at job start Tue Mar 31 2020 04:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47421 * 2 1 4 4 C 1.52995 * 109.47191 * 239.99484 * 2 1 3 5 5 N 1.46896 * 109.47130 * 184.49482 * 4 2 1 6 6 C 1.47018 * 110.99912 * 170.27327 * 5 4 2 7 7 C 1.53099 * 109.25651 * 182.34968 * 6 5 4 8 8 O 1.43009 * 109.29751 * 303.22017 * 7 6 5 9 9 C 1.43016 * 113.73679 * 58.64474 * 8 7 6 10 10 C 1.47015 * 111.00109 * 293.95451 * 5 4 2 11 11 N 1.46504 * 109.47073 * 119.99485 * 2 1 3 12 12 C 1.34775 * 119.99980 * 279.07537 * 11 2 1 13 13 O 1.21354 * 120.00181 * 359.97438 * 12 11 2 14 14 C 1.49456 * 119.99956 * 180.02562 * 12 11 2 15 15 O 1.21347 * 119.99960 * 359.97438 * 14 12 11 16 16 N 1.34775 * 119.99956 * 179.97438 * 14 12 11 17 17 C 1.46494 * 119.99912 * 180.02562 * 16 14 12 18 18 C 1.52999 * 109.47321 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47188 * 179.97438 * 18 17 16 20 20 C 1.50707 * 109.47084 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99690 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00220 * 180.02562 * 20 19 18 23 23 N 1.31505 * 120.00118 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99866 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46979 * 89.99910 * 24 22 20 26 26 H 1.48495 * 109.47011 * 210.00142 * 24 22 20 27 27 H 1.48501 * 109.46795 * 330.00072 * 24 22 20 28 28 H 1.08995 * 109.47000 * 60.00207 * 1 2 3 29 29 H 1.08993 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46835 * 300.00766 * 1 2 3 31 31 H 1.09001 * 109.47389 * 64.49608 * 4 2 1 32 32 H 1.08999 * 109.47285 * 304.49708 * 4 2 1 33 33 H 1.09002 * 109.46957 * 62.43930 * 6 5 4 34 34 H 1.08996 * 109.54526 * 302.30652 * 6 5 4 35 35 H 1.09000 * 109.50512 * 183.26201 * 7 6 5 36 36 H 1.08997 * 109.50304 * 63.17867 * 7 6 5 37 37 H 1.08999 * 109.50467 * 61.27136 * 9 8 7 38 38 H 1.09008 * 109.50588 * 181.35246 * 9 8 7 39 39 H 1.09001 * 109.50412 * 57.67419 * 10 5 4 40 40 H 1.08999 * 109.54313 * 297.56446 * 10 5 4 41 41 H 0.96998 * 120.00018 * 99.07188 * 11 2 1 42 42 H 0.96998 * 120.00001 * 359.97438 * 16 14 12 43 43 H 1.09007 * 109.47076 * 299.99434 * 17 16 14 44 44 H 1.09001 * 109.47679 * 59.99639 * 17 16 14 45 45 H 1.08994 * 109.47278 * 299.99878 * 18 17 16 46 46 H 1.09000 * 109.47190 * 59.99782 * 18 17 16 47 47 H 1.08998 * 109.47516 * 299.99611 * 19 18 17 48 48 H 1.09001 * 109.47507 * 60.00021 * 19 18 17 49 49 H 0.97006 * 120.00433 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5050 -0.8160 -1.1961 6 6 4.0146 -1.6989 -2.2555 7 6 5.5358 -1.8153 -2.1274 8 8 6.1161 -0.5095 -2.1839 9 6 5.6425 0.3756 -1.1653 10 6 4.1226 0.5152 -1.2843 11 7 2.0184 -0.6905 1.1963 12 6 2.0694 -0.0406 2.3759 13 8 1.7113 1.1167 2.4470 14 6 2.5681 -0.7449 3.5961 15 8 2.9267 -1.9020 3.5249 16 7 2.6197 -0.0948 4.7756 17 6 3.1090 -0.7849 5.9715 18 6 3.0655 0.1707 7.1656 19 6 3.5760 -0.5503 8.4147 20 6 3.5325 0.3908 9.5910 21 1 3.1768 1.4022 9.4605 22 6 3.9479 -0.0389 10.8335 23 7 3.9104 0.7825 11.8598 24 14 4.5638 -1.7880 11.0590 25 1 6.0303 -1.8298 10.8289 26 1 4.2663 -2.2432 12.4408 27 1 3.8845 -2.6812 10.0865 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.7440 -0.1632 -2.1374 32 1 1.6124 -1.7231 -1.2903 33 1 3.7624 -1.2803 -3.2298 34 1 3.5643 -2.6864 -2.1552 35 1 5.9244 -2.4221 -2.9452 36 1 5.7860 -2.2840 -1.1757 37 1 5.8953 -0.0290 -0.1853 38 1 6.1091 1.3532 -1.2868 39 1 3.7503 1.1434 -0.4750 40 1 3.8728 0.9702 -2.2427 41 1 2.3049 -1.6155 1.1393 42 1 2.3334 0.8303 4.8324 43 1 2.4783 -1.6504 6.1752 44 1 4.1352 -1.1138 5.8071 45 1 3.6963 1.0358 6.9617 46 1 2.0395 0.4999 7.3303 47 1 2.9448 -1.4153 8.6185 48 1 4.6019 -0.8799 8.2504 49 1 4.2029 0.4803 12.7339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340260004.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:37 Heat of formation + Delta-G solvation = -147.337440 kcal Electronic energy + Delta-G solvation = -27995.543055 eV Core-core repulsion = 23956.303474 eV Total energy + Delta-G solvation = -4039.239581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.75709 -40.63229 -39.68271 -37.81561 -37.13431 -35.66955 -35.09323 -33.29054 -32.28226 -32.09056 -29.32707 -29.01581 -26.41312 -25.44529 -25.04342 -24.03192 -22.29239 -21.97445 -21.40191 -21.15360 -19.54898 -18.84055 -18.02404 -17.64799 -17.24118 -17.11039 -16.82302 -16.48984 -16.11845 -16.07293 -16.02183 -15.82228 -15.58936 -15.24909 -14.97033 -14.77622 -14.72962 -14.06161 -13.81664 -13.70264 -13.58342 -13.31364 -13.02476 -12.93034 -12.77280 -12.71108 -12.62717 -12.61113 -12.34739 -11.89727 -11.79950 -11.77607 -11.60357 -11.49375 -11.33262 -10.75273 -10.71712 -10.64497 -10.30202 -10.20852 -9.42922 -8.28101 -6.32522 0.37397 1.34949 1.38792 1.40357 1.52209 2.17012 2.37810 2.57852 2.75775 2.93291 3.07585 3.47630 3.61217 3.89988 3.95037 4.02760 4.07188 4.16942 4.17657 4.22503 4.25130 4.34280 4.48252 4.52309 4.60087 4.68068 4.71796 4.71980 4.78910 4.82603 4.86665 4.88592 4.95454 5.00006 5.02114 5.20113 5.24109 5.32712 5.46634 5.55589 5.65357 5.87788 5.91041 5.98291 6.15105 6.28375 6.39279 6.75533 6.76725 6.97961 7.32157 8.88433 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.002105 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.607790 B =13299.647518 C =14097.525809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.077 0.923 4 C 0.052 3.948 5 N -0.548 5.548 6 C 0.023 3.977 7 C 0.056 3.944 8 O -0.405 6.405 9 C 0.061 3.939 10 C 0.021 3.979 11 N -0.667 5.667 12 C 0.513 3.487 13 O -0.546 6.546 14 C 0.501 3.499 15 O -0.546 6.546 16 N -0.690 5.690 17 C 0.125 3.875 18 C -0.104 4.104 19 C -0.011 4.011 20 C -0.532 4.532 21 H 0.034 0.966 22 C 0.002 3.998 23 N -0.952 5.952 24 Si 0.951 3.049 25 H -0.267 1.267 26 H -0.286 1.286 27 H -0.244 1.244 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.047 0.953 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.107 0.893 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.419 0.581 42 H 0.417 0.583 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.025 0.975 48 H 0.023 0.977 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.519 -6.103 -35.721 36.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.095 0.905 4 C -0.076 4.076 5 N -0.273 5.273 6 C -0.105 4.105 7 C -0.020 4.020 8 O -0.324 6.324 9 C -0.016 4.016 10 C -0.107 4.107 11 N -0.320 5.320 12 C 0.293 3.707 13 O -0.424 6.424 14 C 0.282 3.718 15 O -0.424 6.424 16 N -0.343 5.343 17 C 0.002 3.998 18 C -0.142 4.142 19 C -0.049 4.049 20 C -0.570 4.570 21 H 0.053 0.947 22 C -0.195 4.195 23 N -0.592 5.592 24 Si 0.774 3.226 25 H -0.192 1.192 26 H -0.212 1.212 27 H -0.167 1.167 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.065 0.935 34 H 0.123 0.877 35 H 0.132 0.868 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.125 0.875 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.256 0.744 42 H 0.254 0.746 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.043 0.957 48 H 0.042 0.958 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.218 -6.250 -35.257 35.951 hybrid contribution -0.070 0.139 0.430 0.457 sum -3.288 -6.111 -34.827 35.512 Atomic orbital electron populations 1.22124 0.93390 1.03331 1.03047 1.21219 0.94817 0.96863 0.83102 0.90472 1.22470 0.86828 1.02596 0.95702 1.62152 1.06171 1.11360 1.47632 1.22795 0.96150 0.98755 0.92774 1.22835 0.92086 0.84177 1.02923 1.87964 1.67058 1.23867 1.53540 1.22705 0.93036 0.94779 0.91047 1.22749 0.95561 0.90997 1.01432 1.45657 1.62597 1.17112 1.06610 1.19925 0.79372 0.86359 0.85052 1.90756 1.48665 1.17237 1.85750 1.20381 0.79608 0.86646 0.85148 1.90741 1.48432 1.17338 1.85875 1.45893 1.63263 1.17308 1.07802 1.21524 0.99894 0.95646 0.82754 1.21514 1.01746 0.98052 0.92883 1.19461 0.96748 0.95944 0.92716 1.21474 1.42744 0.98942 0.93864 0.94736 1.26035 0.95514 1.02365 0.95567 1.70067 1.49737 1.38190 1.01246 0.85651 0.79413 0.79772 0.77784 1.19217 1.21189 1.16698 0.89331 0.90975 0.93588 0.91189 0.87912 0.93513 0.87704 0.86777 0.92866 0.93338 0.87502 0.90081 0.93336 0.74373 0.74566 0.91024 0.91054 0.91882 0.91857 0.95663 0.95817 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.42 71.98 0.68 -1.10 16 2 C 0.14 1.82 2.32 44.99 0.10 1.93 16 3 H 0.08 1.21 6.29 -2.39 -0.02 1.20 16 4 C 0.05 0.42 4.49 86.30 0.39 0.81 16 5 N -0.55 -6.30 4.46 -895.22 -3.99 -10.30 16 6 C 0.02 0.21 5.65 86.31 0.49 0.70 16 7 C 0.06 0.68 7.01 72.02 0.50 1.19 16 8 O -0.41 -7.03 10.83 -148.98 -1.61 -8.64 16 9 C 0.06 0.93 7.01 72.02 0.50 1.44 16 10 C 0.02 0.27 5.43 86.31 0.47 0.74 16 11 N -0.67 -11.55 4.85 -443.85 -2.15 -13.70 16 12 C 0.51 12.22 7.80 87.27 0.68 12.90 16 13 O -0.55 -15.07 15.96 -3.26 -0.05 -15.13 16 14 C 0.50 13.78 7.89 87.27 0.69 14.47 16 15 O -0.55 -17.03 16.48 -3.24 -0.05 -17.08 16 16 N -0.69 -19.05 5.55 -464.41 -2.58 -21.63 16 17 C 0.12 3.83 5.67 86.38 0.49 4.32 16 18 C -0.10 -3.77 5.27 30.59 0.16 -3.61 16 19 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 20 C -0.53 -30.30 9.66 25.60 0.25 -30.06 16 21 H 0.03 2.15 7.99 -2.91 -0.02 2.13 16 22 C 0.00 0.11 5.47 84.66 0.46 0.57 16 23 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 24 Si 0.95 44.00 27.47 68.60 1.88 45.89 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 27 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 28 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.04 0.75 7.90 -2.39 -0.02 0.73 16 31 H 0.07 0.41 8.12 -2.39 -0.02 0.39 16 32 H 0.10 0.55 8.04 -2.39 -0.02 0.53 16 33 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.10 0.62 8.09 -2.39 -0.02 0.60 16 35 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.08 1.18 6.47 -2.39 -0.02 1.17 16 40 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.42 6.88 8.04 -92.71 -0.75 6.13 16 42 H 0.42 10.71 7.94 -92.71 -0.74 9.98 16 43 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 44 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.06 2.28 8.14 -2.39 -0.02 2.27 16 47 H 0.03 1.11 7.20 -2.39 -0.02 1.09 16 48 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 49 H 0.27 15.58 8.31 -92.70 -0.77 14.80 16 Total: -1.00 -71.86 397.09 -2.86 -74.72 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.59 Total: 21.40 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 5.99 Total: 3.93 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -8.42 Total: -105.09 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -1.72 Total: -40.85 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.88 Total: 45.89 kcal Total: -71.86 -2.86 -74.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340260004.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.618 kcal (2) G-P(sol) polarization free energy of solvation -71.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds