Wall clock time and date at job start Tue Mar 31 2020 04:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46980 * 2 1 4 4 C 1.52994 * 109.47401 * 120.00338 * 2 1 3 5 5 N 1.46904 * 109.47235 * 175.72260 * 4 2 1 6 6 C 1.47014 * 111.00130 * 199.46632 * 5 4 2 7 7 C 1.53090 * 109.26073 * 177.60827 * 6 5 4 8 8 O 1.43009 * 109.26066 * 56.84112 * 7 6 5 9 9 C 1.43019 * 113.74256 * 301.33504 * 8 7 6 10 10 C 1.47004 * 110.99978 * 75.82510 * 5 4 2 11 11 N 1.46504 * 109.46806 * 240.00174 * 2 1 3 12 12 C 1.34779 * 119.99743 * 83.74305 * 11 2 1 13 13 O 1.21345 * 120.00187 * 359.97438 * 12 11 2 14 14 C 1.49452 * 120.00052 * 179.97438 * 12 11 2 15 15 O 1.21353 * 119.99694 * 0.02562 * 14 12 11 16 16 N 1.34774 * 120.00329 * 179.97438 * 14 12 11 17 17 C 1.46498 * 120.00314 * 180.02562 * 16 14 12 18 18 C 1.52996 * 109.47476 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47187 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.46871 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00332 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99901 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00055 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99964 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47742 * 89.99503 * 24 22 20 26 26 H 1.48499 * 109.47141 * 209.99707 * 24 22 20 27 27 H 1.48507 * 109.47167 * 329.99364 * 24 22 20 28 28 H 1.08997 * 109.47044 * 299.99486 * 1 2 3 29 29 H 1.08992 * 109.47226 * 59.99572 * 1 2 3 30 30 H 1.09003 * 109.46755 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47366 * 55.71769 * 4 2 1 32 32 H 1.08996 * 109.47500 * 295.71975 * 4 2 1 33 33 H 1.09000 * 109.50327 * 297.53962 * 6 5 4 34 34 H 1.09002 * 109.50964 * 57.66513 * 6 5 4 35 35 H 1.09006 * 109.50450 * 296.91196 * 7 6 5 36 36 H 1.08998 * 109.54725 * 176.80505 * 7 6 5 37 37 H 1.08997 * 109.50569 * 298.73390 * 9 8 7 38 38 H 1.09002 * 109.54150 * 178.62485 * 9 8 7 39 39 H 1.08997 * 109.51485 * 302.32796 * 10 5 4 40 40 H 1.09008 * 109.50546 * 62.46218 * 10 5 4 41 41 H 0.96993 * 119.99972 * 263.73903 * 11 2 1 42 42 H 0.97002 * 119.99908 * 0.02562 * 16 14 12 43 43 H 1.09000 * 109.47083 * 300.00552 * 17 16 14 44 44 H 1.09001 * 109.47301 * 59.99735 * 17 16 14 45 45 H 1.09000 * 109.47155 * 300.00189 * 18 17 16 46 46 H 1.09000 * 109.47146 * 60.00198 * 18 17 16 47 47 H 1.08996 * 109.47031 * 299.99776 * 19 18 17 48 48 H 1.09000 * 109.46837 * 60.00105 * 19 18 17 49 49 H 0.96994 * 119.99715 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5055 -0.8114 1.1985 6 6 4.0001 -1.8634 2.0985 7 6 5.5223 -1.9631 1.9703 8 8 6.1043 -0.6884 2.2559 9 6 5.6454 0.3595 1.3977 10 6 4.1243 0.4827 1.5201 11 7 2.0183 -0.6906 -1.1962 12 6 2.1229 -0.0246 -2.3633 13 8 1.8123 1.1469 -2.4233 14 6 2.6216 -0.7289 -3.5835 15 8 2.9318 -1.9005 -3.5236 16 7 2.7257 -0.0631 -4.7507 17 6 3.2140 -0.7536 -5.9469 18 6 3.2357 0.2216 -7.1256 19 6 3.7463 -0.4994 -8.3747 20 6 3.7671 0.4610 -9.5359 21 1 3.4485 1.4835 -9.3967 22 6 4.1939 0.0346 -10.7757 23 7 4.2115 0.8726 -11.7891 24 14 4.7456 -1.7337 -11.0162 25 1 3.5801 -2.5674 -11.4059 26 1 5.7742 -1.7902 -12.0858 27 1 5.3212 -2.2496 -9.7482 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6155 -1.7244 1.2883 32 1 1.7408 -0.1652 2.1375 33 1 3.7369 -1.6158 3.1269 34 1 3.5485 -2.8173 1.8262 35 1 5.7832 -2.2630 0.9553 36 1 5.9002 -2.7023 2.6767 37 1 5.9098 0.1271 0.3661 38 1 6.1116 1.3005 1.6897 39 1 3.7636 1.2414 0.8256 40 1 3.8631 0.7678 2.5394 41 1 2.2663 -1.6271 -1.1483 42 1 2.4774 0.8734 -4.7987 43 1 4.2221 -1.1261 -5.7653 44 1 2.5541 -1.5896 -6.1787 45 1 2.2278 0.5945 -7.3073 46 1 3.8960 1.0573 -6.8936 47 1 4.7543 -0.8719 -8.1927 48 1 3.0864 -1.3354 -8.6069 49 1 4.5114 0.5725 -12.6613 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340260007.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:42 Heat of formation + Delta-G solvation = -121.236388 kcal Electronic energy + Delta-G solvation = -27970.347123 eV Core-core repulsion = 23932.239368 eV Total energy + Delta-G solvation = -4038.107755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.75538 -39.98276 -38.65727 -37.07231 -35.77719 -34.88620 -33.31765 -31.69049 -31.47363 -31.43148 -28.50541 -27.64362 -25.37094 -24.56327 -24.50720 -22.59812 -21.28012 -20.86812 -20.65430 -20.09256 -18.41566 -17.15183 -17.05510 -16.72835 -16.53894 -16.08486 -15.84638 -15.53771 -15.39808 -15.23660 -14.94639 -14.84357 -14.50697 -14.17822 -13.81132 -13.62810 -13.47447 -13.10867 -12.77332 -12.71460 -12.51249 -12.30310 -12.07009 -12.03956 -11.95751 -11.81778 -11.64733 -11.29150 -11.09952 -10.96238 -10.91368 -10.16099 -10.11310 -9.96417 -9.77538 -9.48150 -9.41746 -9.23403 -9.03026 -8.94062 -8.55823 -6.06225 -4.05112 1.44909 2.35217 3.12989 3.25408 3.30852 3.38519 3.42156 3.45227 3.68353 4.15382 4.41597 4.43167 4.43988 4.51198 4.59816 4.69399 4.76898 4.77481 4.88021 4.95428 5.07407 5.11283 5.19398 5.25943 5.27524 5.32407 5.39080 5.46108 5.52542 5.53029 5.58594 5.77497 5.94879 6.07311 6.19661 6.37583 6.39624 6.40245 6.56693 6.70907 6.75094 6.97070 7.20971 7.34300 7.41991 7.75214 7.76531 8.04994 8.50319 8.97961 9.55650 11.07011 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.016811 B = 0.002110 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.134209 B =13267.859618 C =14064.239813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 H 0.090 0.910 4 C 0.045 3.955 5 N -0.535 5.535 6 C 0.019 3.981 7 C 0.062 3.938 8 O -0.386 6.386 9 C 0.063 3.937 10 C 0.017 3.983 11 N -0.682 5.682 12 C 0.510 3.490 13 O -0.526 6.526 14 C 0.501 3.499 15 O -0.527 6.527 16 N -0.693 5.693 17 C 0.112 3.888 18 C -0.115 4.115 19 C -0.010 4.010 20 C -0.522 4.522 21 H 0.072 0.928 22 C 0.066 3.934 23 N -0.902 5.902 24 Si 0.880 3.120 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.264 1.264 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.044 0.956 41 H 0.414 0.586 42 H 0.412 0.588 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.019 0.981 48 H 0.015 0.985 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.990 -4.393 33.209 33.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.108 0.892 4 C -0.084 4.084 5 N -0.260 5.260 6 C -0.109 4.109 7 C -0.015 4.015 8 O -0.305 6.305 9 C -0.014 4.014 10 C -0.111 4.111 11 N -0.335 5.335 12 C 0.291 3.709 13 O -0.402 6.402 14 C 0.281 3.719 15 O -0.404 6.404 16 N -0.345 5.345 17 C -0.010 4.010 18 C -0.153 4.153 19 C -0.048 4.048 20 C -0.560 4.560 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.541 5.541 24 Si 0.708 3.292 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.189 1.189 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.250 0.750 42 H 0.248 0.752 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.038 0.962 48 H 0.033 0.967 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.659 -4.476 32.680 33.187 hybrid contribution -0.216 -0.679 0.283 0.767 sum -3.876 -5.156 32.963 33.588 Atomic orbital electron populations 1.22176 0.94381 1.02679 1.03163 1.21015 0.93946 0.97507 0.83331 0.89229 1.22489 0.87595 1.01680 0.96600 1.62134 1.05725 1.05764 1.52346 1.22812 0.97070 0.96024 0.95019 1.22673 0.91123 0.85760 1.01933 1.87990 1.66974 1.17619 1.57882 1.22668 0.92394 0.91265 0.95082 1.22851 0.96164 0.91792 1.00300 1.45582 1.64679 1.15545 1.07719 1.20255 0.78957 0.86873 0.84847 1.90752 1.48520 1.15747 1.85163 1.20067 0.80065 0.87061 0.84729 1.90752 1.48749 1.15679 1.85184 1.46010 1.63951 1.15673 1.08838 1.21824 0.99623 0.96408 0.83176 1.21736 1.02006 0.97824 0.93727 1.19503 0.96103 0.96414 0.92821 1.21093 1.44169 0.98238 0.92526 0.90943 1.25035 0.95052 0.97494 0.95939 1.69912 1.47866 1.35187 1.01157 0.86770 0.78834 0.85475 0.78169 1.20261 1.21379 1.18894 0.91355 0.91301 0.92034 0.89747 0.92516 0.93887 0.89379 0.91937 0.88401 0.91993 0.88324 0.89399 0.93770 0.74958 0.75216 0.91182 0.91194 0.91849 0.91821 0.96244 0.96692 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 9.47 37.16 0.35 -0.72 16 2 C 0.15 1.07 2.57 -67.93 -0.17 0.90 16 3 H 0.09 0.77 6.53 -51.93 -0.34 0.43 16 4 C 0.04 0.24 4.55 -3.82 -0.02 0.23 16 5 N -0.53 -3.62 4.40 -234.32 -1.03 -4.65 16 6 C 0.02 0.11 5.60 -3.72 -0.02 0.09 16 7 C 0.06 0.43 7.01 37.20 0.26 0.69 16 8 O -0.39 -3.50 10.83 -35.23 -0.38 -3.88 16 9 C 0.06 0.48 7.01 37.21 0.26 0.74 16 10 C 0.02 0.12 5.47 -3.72 -0.02 0.10 16 11 N -0.68 -6.45 4.82 -54.24 -0.26 -6.71 16 12 C 0.51 6.37 7.84 -11.58 -0.09 6.28 16 13 O -0.53 -7.49 16.16 5.50 0.09 -7.40 16 14 C 0.50 7.20 7.89 -11.59 -0.09 7.10 16 15 O -0.53 -8.59 16.48 5.49 0.09 -8.50 16 16 N -0.69 -9.98 5.55 -60.73 -0.34 -10.32 16 17 C 0.11 1.81 5.67 -4.04 -0.02 1.79 16 18 C -0.11 -2.14 5.27 -26.73 -0.14 -2.28 16 19 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 20 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 21 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 22 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 23 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 24 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 27 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.38 7.86 -51.93 -0.41 -0.03 16 32 H 0.06 0.26 7.99 -51.93 -0.41 -0.15 16 33 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.09 0.41 8.02 -51.93 -0.42 0.00 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.63 6.91 -51.93 -0.36 0.27 16 40 H 0.04 0.29 8.13 -51.92 -0.42 -0.13 16 41 H 0.41 3.76 8.06 -40.82 -0.33 3.43 16 42 H 0.41 5.48 7.94 -40.82 -0.32 5.16 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 48 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 49 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 398.14 15.07 6.00 6.00 Total: -1.00 -33.25 398.14 -8.41 -41.66 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.44 Total: 2.44 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -0.25 Total: 1.37 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.86 Total: -48.63 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.20 Total: -19.78 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.25 -8.41 -41.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340260007.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.576 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds