Wall clock time and date at job start Tue Mar 31 2020 05:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47214 * 2 1 4 4 C 1.47012 * 110.99618 * 293.95428 * 3 2 1 5 5 C 1.53102 * 109.25682 * 177.60861 * 4 3 2 6 6 O 1.43013 * 109.25911 * 56.84668 * 5 4 3 7 7 C 1.43008 * 113.73826 * 301.32990 * 6 5 4 8 8 H 1.08994 * 109.50823 * 298.69151 * 7 6 5 9 9 C 1.50708 * 109.50603 * 178.60313 * 7 6 5 10 10 O 1.21285 * 119.99985 * 355.08827 * 9 7 6 11 11 N 1.34780 * 119.99815 * 175.08918 * 9 7 6 12 12 C 1.46502 * 119.99475 * 180.02562 * 11 9 7 13 13 C 1.53008 * 109.46588 * 179.97438 * 12 11 9 14 14 H 1.09002 * 109.50840 * 60.00285 * 13 12 11 15 15 C 1.53293 * 109.50604 * 180.10056 * 13 12 11 16 16 N 1.47155 * 108.37899 * 172.22955 * 15 13 12 17 17 C 1.36934 * 120.98338 * 129.44424 * 16 15 13 18 18 H 1.08002 * 120.00314 * 206.23459 * 17 16 15 19 19 C 1.38809 * 120.00065 * 26.23495 * 17 16 15 20 20 N 1.31624 * 120.00375 * 16.91682 * 19 17 16 21 21 Si 1.86801 * 120.00347 * 196.91421 * 19 17 16 22 22 H 1.48497 * 109.47278 * 89.99593 * 21 19 17 23 23 H 1.48495 * 109.47668 * 210.00393 * 21 19 17 24 24 H 1.48503 * 109.46678 * 330.00027 * 21 19 17 25 25 C 1.47156 * 118.03453 * 309.45984 * 16 15 13 26 26 C 1.53290 * 108.38402 * 50.53887 * 25 16 15 27 27 O 1.42961 * 109.26605 * 307.72078 * 26 25 16 28 28 C 1.47019 * 110.99702 * 170.27331 * 3 2 1 29 29 H 1.09007 * 109.46809 * 299.99853 * 1 2 3 30 30 H 1.08993 * 109.47280 * 60.00430 * 1 2 3 31 31 H 1.09000 * 109.46906 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47165 * 239.99787 * 2 1 3 33 33 H 1.09005 * 109.47098 * 119.99938 * 2 1 3 34 34 H 1.09005 * 109.51024 * 57.67361 * 4 3 2 35 35 H 1.09003 * 109.54254 * 297.56365 * 4 3 2 36 36 H 1.08995 * 109.50549 * 296.90941 * 5 4 3 37 37 H 1.09005 * 109.50384 * 176.78513 * 5 4 3 38 38 H 0.96995 * 120.00040 * 359.97438 * 11 9 7 39 39 H 1.08999 * 109.47035 * 299.99694 * 12 11 9 40 40 H 1.09000 * 109.47101 * 60.00121 * 12 11 9 41 41 H 1.09000 * 109.68397 * 291.94154 * 15 13 12 42 42 H 1.08991 * 109.68821 * 52.50570 * 15 13 12 43 43 H 0.96990 * 120.00577 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.67938 * 170.26311 * 25 16 15 45 45 H 1.08995 * 109.68165 * 290.81657 * 25 16 15 46 46 H 1.09004 * 109.51404 * 67.62142 * 26 25 16 47 47 H 1.08993 * 109.51549 * 187.72406 * 26 25 16 48 48 H 1.09002 * 109.47430 * 62.44170 * 28 3 2 49 49 H 1.08995 * 109.54849 * 302.30013 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6699 2.0673 -1.2543 5 6 2.1453 3.5212 -1.1878 6 8 3.5521 3.5462 -0.9318 7 6 3.9281 2.8909 0.2824 8 1 3.4554 3.3913 1.1275 9 6 5.4260 2.9438 0.4398 10 8 6.1127 3.4090 -0.4451 11 7 6.0025 2.4743 1.5640 12 6 7.4585 2.5263 1.7171 13 6 7.8500 1.9351 3.0730 14 1 7.5160 0.8990 3.1285 15 6 9.3733 1.9913 3.2353 16 7 9.7082 1.5941 4.6121 17 6 10.6533 0.6344 4.8588 18 1 10.6083 0.0532 5.7679 19 6 11.6693 0.4085 3.9403 20 7 11.9316 1.3069 3.0148 21 14 12.6645 -1.1704 4.0177 22 1 12.0131 -2.2078 3.1783 23 1 14.0376 -0.9155 3.5129 24 1 12.7339 -1.6432 5.4237 25 6 8.9972 2.2585 5.7159 26 6 7.4923 2.1893 5.4327 27 8 7.2359 2.6917 4.1191 28 6 3.4707 1.4307 0.2319 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.5889 2.0438 -1.3923 35 1 2.1546 1.5638 -2.0908 36 1 1.6201 4.0394 -0.3855 37 1 1.9391 4.0153 -2.1373 38 1 5.4532 2.1026 2.2718 39 1 7.9285 1.9504 0.9199 40 1 7.7928 3.5623 1.6627 41 1 9.8432 1.3050 2.5308 42 1 9.7251 3.0061 3.0501 43 1 12.6417 1.1493 2.3732 44 1 9.2180 1.7492 6.6540 45 1 9.3111 3.3003 5.7805 46 1 7.1567 1.1542 5.4978 47 1 6.9559 2.7926 6.1650 48 1 3.9849 0.9162 -0.5800 49 1 3.7043 0.9432 1.1783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035610621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:36 Heat of formation + Delta-G solvation = -89.547323 kcal Electronic energy + Delta-G solvation = -28955.237293 eV Core-core repulsion = 24918.503679 eV Total energy + Delta-G solvation = -4036.733614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.48762 -39.05123 -38.29703 -36.42485 -34.80853 -34.32767 -32.27796 -31.33404 -31.23076 -30.69074 -27.79833 -27.03844 -25.37785 -24.59514 -23.33180 -22.83745 -21.67828 -20.87788 -20.40351 -19.60229 -17.62502 -17.06546 -16.74534 -16.38260 -16.06359 -15.77136 -15.50688 -15.35382 -15.03124 -14.84399 -14.40697 -14.35718 -14.08831 -13.99444 -13.84882 -13.31385 -13.21163 -12.85806 -12.81502 -12.47562 -12.37220 -12.20322 -12.04744 -11.75571 -11.55825 -11.25874 -11.13060 -11.04034 -10.87606 -10.76198 -10.44311 -10.28117 -10.06250 -9.97738 -9.71683 -9.62720 -9.11033 -8.89739 -8.82672 -8.58233 -6.79447 -5.87507 -3.31587 2.62112 2.81888 3.32450 3.35397 3.39337 3.41071 3.88253 4.22882 4.40842 4.44053 4.51966 4.56637 4.74280 4.76749 4.88566 4.93785 5.05533 5.10324 5.15233 5.19872 5.30825 5.32643 5.40285 5.50428 5.51374 5.52678 5.59287 5.60057 5.80259 5.82921 5.90129 5.99035 6.08771 6.20902 6.33510 6.46688 6.48859 6.53388 6.60103 6.75278 6.81315 7.03563 7.44753 7.60334 7.67888 7.80456 8.29278 8.30968 9.07519 9.70432 10.27342 11.20577 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.016676 B = 0.002541 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.613925 B =11017.826741 C =11146.862959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 N -0.536 5.536 4 C 0.012 3.988 5 C 0.062 3.938 6 O -0.355 6.355 7 C 0.080 3.920 8 H 0.093 0.907 9 C 0.517 3.483 10 O -0.521 6.521 11 N -0.716 5.716 12 C 0.134 3.866 13 C 0.056 3.944 14 H 0.056 0.944 15 C 0.152 3.848 16 N -0.594 5.594 17 C -0.257 4.257 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.109 3.891 26 C 0.050 3.950 27 O -0.390 6.390 28 C 0.029 3.971 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.402 0.598 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.032 0.968 43 H 0.256 0.744 44 H 0.062 0.938 45 H 0.027 0.973 46 H 0.043 0.957 47 H 0.082 0.918 48 H 0.051 0.949 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.330 -0.650 -4.712 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 N -0.261 5.261 4 C -0.116 4.116 5 C -0.015 4.015 6 O -0.273 6.273 7 C 0.018 3.982 8 H 0.111 0.889 9 C 0.300 3.700 10 O -0.395 6.395 11 N -0.368 5.368 12 C 0.010 3.990 13 C -0.004 4.004 14 H 0.074 0.926 15 C 0.026 3.974 16 N -0.318 5.318 17 C -0.386 4.386 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.735 3.265 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.204 1.204 25 C -0.018 4.018 26 C -0.028 4.028 27 O -0.309 6.309 28 C -0.099 4.099 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.237 0.763 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.045 0.955 46 H 0.061 0.939 47 H 0.100 0.900 48 H 0.069 0.931 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.853 0.177 -5.249 23.448 hybrid contribution 0.671 -1.767 -0.038 1.890 sum -22.181 -1.589 -5.287 22.858 Atomic orbital electron populations 1.21797 0.94513 1.01787 1.02521 1.22122 0.96324 0.88123 1.01305 1.62252 1.12739 1.16585 1.34537 1.22895 1.01944 0.95898 0.90867 1.22746 0.81547 0.94993 1.02194 1.88138 1.23006 1.76483 1.39652 1.21933 0.93132 0.93281 0.89867 0.88928 1.19990 0.88816 0.78645 0.82531 1.90739 1.64206 1.43983 1.40604 1.45875 1.08891 1.63114 1.18963 1.21453 0.78658 1.02725 0.96140 1.23148 0.97884 0.93827 0.85536 0.92603 1.21312 0.87559 1.00272 0.88306 1.44052 1.43959 1.44204 0.99611 1.19193 1.03107 1.09878 1.06462 0.91310 1.25068 0.96723 0.98254 0.99562 1.70013 1.32038 1.32550 1.19926 0.86244 0.79271 0.83167 0.77813 1.21344 1.21622 1.20396 1.21604 0.90889 0.96546 0.92732 1.23002 0.97825 0.97996 0.83946 1.87777 1.73460 1.54941 1.14756 1.22674 0.88340 0.96034 1.02901 0.91661 0.92687 0.92078 0.94587 0.90285 0.89129 0.93670 0.91991 0.87892 0.76339 0.89876 0.90555 0.88563 0.94993 0.93350 0.91963 0.95517 0.93881 0.89979 0.93092 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.84 37.16 0.37 -0.50 16 2 C 0.05 0.35 5.68 -3.83 -0.02 0.33 16 3 N -0.54 -4.66 4.73 -234.30 -1.11 -5.77 16 4 C 0.01 0.10 5.43 -3.71 -0.02 0.08 16 5 C 0.06 0.56 7.01 37.21 0.26 0.82 16 6 O -0.36 -4.74 10.01 -55.06 -0.55 -5.29 16 7 C 0.08 0.96 3.21 -27.82 -0.09 0.87 16 8 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 9 C 0.52 7.88 7.18 -10.98 -0.08 7.80 16 10 O -0.52 -10.30 16.51 -14.28 -0.24 -10.53 16 11 N -0.72 -10.04 5.41 -60.28 -0.33 -10.37 16 12 C 0.13 2.25 5.37 -4.04 -0.02 2.22 16 13 C 0.06 1.02 2.86 -26.58 -0.08 0.95 16 14 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 15 C 0.15 3.54 4.74 -3.53 -0.02 3.52 16 16 N -0.59 -14.61 3.05 -171.83 -0.52 -15.13 16 17 C -0.26 -6.88 9.65 -15.06 -0.15 -7.03 16 18 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 19 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 20 N -0.90 -25.71 11.14 55.49 0.62 -25.10 16 21 Si 0.91 21.24 29.59 -169.99 -5.03 16.21 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C 0.11 2.22 6.74 -3.53 -0.02 2.19 16 26 C 0.05 0.85 6.98 37.31 0.26 1.11 16 27 O -0.39 -7.02 10.14 -35.23 -0.36 -7.38 16 28 C 0.03 0.29 4.89 -3.70 -0.02 0.27 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.30 6.51 -51.93 -0.34 -0.04 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 33 H 0.08 0.54 8.04 -51.93 -0.42 0.13 16 34 H 0.09 0.56 6.37 -51.93 -0.33 0.23 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.40 4.71 8.22 -40.82 -0.34 4.37 16 39 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.10 2.47 6.14 -51.93 -0.32 2.15 16 42 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 48 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.09 0.80 7.96 -51.93 -0.41 0.38 16 LS Contribution 385.92 15.07 5.82 5.82 Total: -1.00 -32.82 385.92 -9.87 -42.69 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -8.46 Total: 2.23 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 0.29 Total: 12.63 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -1.34 Total: -56.36 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -1.14 Total: -23.20 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.82 -9.87 -42.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035610621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.862 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds