Wall clock time and date at job start Tue Mar 31 2020 05:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47088 * 2 1 4 4 C 1.46506 * 119.99537 * 269.99330 * 3 2 1 5 5 C 1.52998 * 109.47320 * 269.99999 * 4 3 2 6 6 C 1.34777 * 120.00199 * 89.99979 * 3 2 1 7 7 O 1.21283 * 119.99750 * 359.97438 * 6 3 2 8 8 C 1.50702 * 119.99928 * 180.27479 * 6 3 2 9 9 C 1.52996 * 109.47159 * 179.72352 * 8 6 3 10 10 C 1.50697 * 109.47491 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99458 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00486 * 180.02562 * 10 9 8 13 13 C 1.46493 * 120.00396 * 180.02562 * 12 10 9 14 14 H 1.09006 * 110.88885 * 34.29472 * 13 12 10 15 15 C 1.54913 * 111.00448 * 270.41744 * 13 12 10 16 16 N 1.47472 * 104.81038 * 204.94762 * 15 13 12 17 17 C 1.36941 * 125.62586 * 204.13639 * 16 15 13 18 18 H 1.08002 * 119.99771 * 359.94431 * 17 16 15 19 19 C 1.38810 * 119.99706 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00140 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99939 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46914 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47074 * 120.00102 * 21 19 17 24 24 H 1.48499 * 109.47492 * 240.00369 * 21 19 17 25 25 C 1.47025 * 108.72394 * 24.06973 * 16 15 13 26 26 C 1.54324 * 107.26777 * 358.97419 * 25 16 15 27 27 H 1.08993 * 110.72066 * 96.17863 * 26 25 16 28 28 O 1.42902 * 110.71634 * 219.44697 * 26 25 16 29 29 H 1.09005 * 109.46685 * 60.00344 * 1 2 3 30 30 H 1.08993 * 109.47594 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47707 * 300.00330 * 1 2 3 32 32 H 1.09001 * 109.46980 * 239.99563 * 2 1 3 33 33 H 1.09005 * 109.46685 * 119.99656 * 2 1 3 34 34 H 1.08994 * 109.46996 * 30.00327 * 4 3 2 35 35 H 1.09001 * 109.46578 * 150.00190 * 4 3 2 36 36 H 1.08997 * 109.47106 * 300.00561 * 5 4 3 37 37 H 1.09004 * 109.46895 * 60.00075 * 5 4 3 38 38 H 1.08992 * 109.47180 * 180.02562 * 5 4 3 39 39 H 1.09004 * 109.46965 * 299.72211 * 8 6 3 40 40 H 1.08994 * 109.46990 * 59.72065 * 8 6 3 41 41 H 1.09004 * 109.47066 * 299.99797 * 9 8 6 42 42 H 1.09000 * 109.47234 * 59.99288 * 9 8 6 43 43 H 0.97001 * 119.99561 * 359.97438 * 12 10 9 44 44 H 1.09003 * 110.36576 * 323.74960 * 15 13 12 45 45 H 1.09000 * 110.36852 * 86.07290 * 15 13 12 46 46 H 0.97003 * 120.00046 * 179.97438 * 20 19 17 47 47 H 1.09001 * 109.87944 * 239.55814 * 25 16 15 48 48 H 1.08997 * 109.88001 * 118.39244 * 25 16 15 49 49 H 0.96706 * 113.99589 * 293.52218 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.7076 1.8313 -1.7104 6 6 2.2430 2.0166 1.1672 7 8 2.0404 1.4450 2.2175 8 6 2.7394 3.4395 1.1671 9 6 2.9041 3.9222 2.6095 10 6 3.4011 5.3449 2.6096 11 8 3.6041 5.9163 1.5592 12 7 3.6210 5.9819 3.7767 13 6 4.1036 7.3651 3.7767 14 1 3.6914 7.9206 2.9342 15 6 5.6520 7.4129 3.7689 16 7 5.9919 8.7156 4.3708 17 6 7.1561 9.4080 4.1692 18 1 7.9200 9.0031 3.5220 19 6 7.3543 10.6300 4.7971 20 7 6.4237 11.1229 5.5867 21 14 8.9420 11.5749 4.5216 22 1 9.8185 10.8112 3.5975 23 1 8.6325 12.9002 3.9275 24 1 9.6369 11.7646 5.8201 25 6 4.8738 9.1485 5.2217 26 6 3.7761 8.0685 5.1202 27 1 3.8480 7.3663 5.9508 28 8 2.4798 8.6681 5.0741 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.5819 1.6875 -2.0284 35 1 2.0956 3.1409 -1.1385 36 1 4.3884 2.2154 -0.9507 37 1 3.8746 0.7620 -1.8406 38 1 3.8895 2.3453 -2.6541 39 1 3.7006 3.4889 0.6554 40 1 2.0200 4.0752 0.6511 41 1 1.9429 3.8728 3.1212 42 1 3.6235 3.2864 3.1256 43 1 3.4590 5.5248 4.6167 44 1 6.0597 6.5999 4.3696 45 1 6.0282 7.3565 2.7474 46 1 6.5625 11.9766 6.0258 47 1 4.4873 10.1043 4.8680 48 1 5.2085 9.2410 6.2549 49 1 2.2267 9.1211 5.8902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198933708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:11 Heat of formation + Delta-G solvation = -101.037366 kcal Electronic energy + Delta-G solvation = -28280.038620 eV Core-core repulsion = 24242.806760 eV Total energy + Delta-G solvation = -4037.231860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.43788 -39.54470 -37.84648 -36.51706 -35.06744 -34.02445 -33.41172 -32.11846 -31.58185 -29.84465 -28.47044 -27.22390 -25.79024 -24.28936 -23.93442 -22.83650 -20.68101 -20.38042 -19.99172 -19.08859 -17.82380 -17.08052 -16.89868 -16.73974 -16.26530 -15.96070 -15.63097 -15.07015 -14.64610 -14.32160 -14.21115 -14.07209 -14.04553 -13.63996 -13.46452 -13.01323 -12.95591 -12.76168 -12.67433 -12.50682 -12.36730 -12.13637 -12.04444 -11.94982 -11.63578 -11.47558 -11.33770 -11.25536 -11.18808 -10.88447 -10.83082 -10.13934 -10.00711 -9.89391 -9.84605 -9.75522 -9.29492 -9.05214 -8.81493 -8.62684 -6.91272 -5.76410 -3.10867 2.39773 2.62170 2.82472 3.35534 3.39315 3.44759 3.47142 4.24115 4.44247 4.50775 4.62920 4.64485 4.73020 4.80214 4.86601 4.97652 5.01389 5.06408 5.08166 5.21589 5.25804 5.40485 5.43950 5.44622 5.50467 5.58367 5.59054 5.66238 5.70620 5.74967 5.82711 5.83870 5.86130 6.09367 6.15032 6.22732 6.54140 6.62315 6.90243 7.04577 7.33078 7.46848 7.69474 7.75496 7.91425 8.12074 8.17373 8.42533 9.15104 9.75168 10.38286 11.35450 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.021983 B = 0.002219 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.391295 B =12613.322250 C =13468.512634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.110 3.890 3 N -0.616 5.616 4 C 0.102 3.898 5 C -0.173 4.173 6 C 0.516 3.484 7 O -0.541 6.541 8 C -0.124 4.124 9 C -0.125 4.125 10 C 0.513 3.487 11 O -0.543 6.543 12 N -0.715 5.715 13 C 0.138 3.862 14 H 0.103 0.897 15 C 0.130 3.870 16 N -0.601 5.601 17 C -0.227 4.227 18 H 0.081 0.919 19 C -0.009 4.009 20 N -0.924 5.924 21 Si 0.915 3.085 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.154 3.846 26 C 0.068 3.932 27 H 0.058 0.942 28 O -0.563 6.563 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.398 0.602 44 H 0.024 0.976 45 H 0.050 0.950 46 H 0.253 0.747 47 H 0.061 0.939 48 H 0.049 0.951 49 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.631 -20.665 -9.699 25.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.350 5.350 4 C -0.021 4.021 5 C -0.231 4.231 6 C 0.305 3.695 7 O -0.418 6.418 8 C -0.164 4.164 9 C -0.165 4.165 10 C 0.299 3.701 11 O -0.421 6.421 12 N -0.365 5.365 13 C 0.033 3.967 14 H 0.121 0.879 15 C 0.003 3.997 16 N -0.328 5.328 17 C -0.355 4.355 18 H 0.099 0.901 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.746 3.254 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.028 3.972 26 C 0.008 3.992 27 H 0.076 0.924 28 O -0.368 6.368 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.232 0.768 44 H 0.041 0.959 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.079 0.921 48 H 0.067 0.933 49 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -11.487 -20.603 -10.441 25.796 hybrid contribution 0.756 0.583 0.846 1.275 sum -10.731 -20.020 -9.595 24.658 Atomic orbital electron populations 1.22126 0.95897 1.02174 1.02368 1.21399 0.94374 0.82414 1.03037 1.48071 1.66294 1.14358 1.06270 1.21637 0.97066 0.98243 0.85192 1.22218 0.96551 1.02246 1.02128 1.20801 0.76765 0.88775 0.83128 1.90692 1.51954 1.68235 1.30941 1.21433 1.04292 0.92357 0.98330 1.21370 1.04210 0.93351 0.97596 1.20553 0.77349 0.88273 0.83924 1.90707 1.52004 1.68193 1.31154 1.45928 1.67397 1.14764 1.08408 1.22247 0.95511 0.80463 0.98489 0.87879 1.21859 0.90787 0.89539 0.97539 1.44276 1.16893 1.18475 1.53204 1.19138 0.92425 1.00060 1.23874 0.90091 1.24825 0.98529 0.97663 0.99489 1.69935 1.33080 1.20023 1.34128 0.85988 0.82339 0.79772 0.77331 1.20416 1.21669 1.21729 1.21821 0.85354 0.93960 0.96061 1.23461 0.84402 0.95677 0.95701 0.92440 1.86466 1.33710 1.74670 1.41973 0.92641 0.91661 0.92147 0.90727 0.89887 0.90277 0.89651 0.92009 0.92418 0.91147 0.87947 0.88042 0.88293 0.88216 0.76781 0.95866 0.93165 0.93705 0.92119 0.93317 0.77676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.24 37.16 0.38 -0.72 16 2 C 0.11 0.79 6.13 -4.04 -0.02 0.76 16 3 N -0.62 -5.06 2.47 -173.68 -0.43 -5.49 16 4 C 0.10 0.61 5.94 -4.04 -0.02 0.58 16 5 C -0.17 -1.01 10.24 37.16 0.38 -0.63 16 6 C 0.52 5.53 7.67 -10.98 -0.08 5.44 16 7 O -0.54 -7.44 15.56 5.55 0.09 -7.36 16 8 C -0.12 -1.26 3.54 -27.88 -0.10 -1.36 16 9 C -0.12 -1.39 4.99 -27.89 -0.14 -1.52 16 10 C 0.51 7.55 7.83 -10.99 -0.09 7.46 16 11 O -0.54 -9.93 15.67 5.55 0.09 -9.84 16 12 N -0.71 -10.57 5.21 -51.73 -0.27 -10.84 16 13 C 0.14 2.61 3.09 -65.78 -0.20 2.41 16 14 H 0.10 2.24 7.64 -51.93 -0.40 1.84 16 15 C 0.13 2.80 6.93 -2.50 -0.02 2.78 16 16 N -0.60 -15.45 3.40 -170.03 -0.58 -16.03 16 17 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 18 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -26.88 10.31 55.49 0.57 -26.30 16 21 Si 0.92 22.15 29.55 -169.99 -5.02 17.13 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.15 3.66 5.15 -3.06 -0.02 3.64 16 26 C 0.07 1.25 3.97 -24.90 -0.10 1.15 16 27 H 0.06 0.93 8.00 -51.93 -0.42 0.52 16 28 O -0.56 -9.77 13.39 -35.23 -0.47 -10.25 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 33 H 0.08 0.72 7.42 -51.93 -0.39 0.33 16 34 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 35 H 0.09 0.51 6.43 -51.93 -0.33 0.18 16 36 H 0.06 0.44 7.24 -51.93 -0.38 0.06 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 1.03 7.17 -51.93 -0.37 0.65 16 40 H 0.10 0.99 7.35 -51.93 -0.38 0.61 16 41 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 42 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 43 H 0.40 4.73 8.54 -40.82 -0.35 4.38 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.06 1.63 7.30 -51.93 -0.38 1.25 16 48 H 0.05 1.25 7.50 -51.93 -0.39 0.86 16 49 H 0.38 4.95 9.12 45.56 0.42 5.37 16 LS Contribution 397.55 15.07 5.99 5.99 Total: -1.00 -35.21 397.55 -7.86 -43.08 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -7.55 Total: 6.78 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: -0.28 Total: 13.12 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.70 Total: -58.66 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.30 Total: -27.44 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.21 -7.86 -43.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198933708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.962 kcal (2) G-P(sol) polarization free energy of solvation -35.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds