Wall clock time and date at job start Tue Mar 31 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47088 * 2 1 4 4 C 1.46506 * 119.99537 * 269.99330 * 3 2 1 5 5 C 1.52998 * 109.47320 * 269.99999 * 4 3 2 6 6 C 1.34777 * 120.00199 * 89.99979 * 3 2 1 7 7 O 1.21283 * 119.99750 * 359.97438 * 6 3 2 8 8 C 1.50702 * 119.99928 * 180.27479 * 6 3 2 9 9 C 1.52996 * 109.47159 * 179.72352 * 8 6 3 10 10 C 1.50697 * 109.47491 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99458 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00486 * 180.02562 * 10 9 8 13 13 C 1.46493 * 120.00396 * 180.02562 * 12 10 9 14 14 H 1.09006 * 110.88885 * 34.29472 * 13 12 10 15 15 C 1.54913 * 111.00448 * 270.41744 * 13 12 10 16 16 N 1.47472 * 104.81038 * 204.94762 * 15 13 12 17 17 C 1.36941 * 125.62586 * 204.13639 * 16 15 13 18 18 H 1.08002 * 119.99771 * 359.94431 * 17 16 15 19 19 C 1.38810 * 119.99706 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00140 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99939 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46914 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47074 * 120.00102 * 21 19 17 24 24 H 1.48499 * 109.47492 * 240.00369 * 21 19 17 25 25 C 1.47025 * 108.72394 * 24.06973 * 16 15 13 26 26 C 1.54324 * 107.26777 * 358.97419 * 25 16 15 27 27 H 1.08993 * 110.72066 * 96.17863 * 26 25 16 28 28 O 1.42902 * 110.71634 * 219.44697 * 26 25 16 29 29 H 1.09005 * 109.46685 * 60.00344 * 1 2 3 30 30 H 1.08993 * 109.47594 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47707 * 300.00330 * 1 2 3 32 32 H 1.09001 * 109.46980 * 239.99563 * 2 1 3 33 33 H 1.09005 * 109.46685 * 119.99656 * 2 1 3 34 34 H 1.08994 * 109.46996 * 30.00327 * 4 3 2 35 35 H 1.09001 * 109.46578 * 150.00190 * 4 3 2 36 36 H 1.08997 * 109.47106 * 300.00561 * 5 4 3 37 37 H 1.09004 * 109.46895 * 60.00075 * 5 4 3 38 38 H 1.08992 * 109.47180 * 180.02562 * 5 4 3 39 39 H 1.09004 * 109.46965 * 299.72211 * 8 6 3 40 40 H 1.08994 * 109.46990 * 59.72065 * 8 6 3 41 41 H 1.09004 * 109.47066 * 299.99797 * 9 8 6 42 42 H 1.09000 * 109.47234 * 59.99288 * 9 8 6 43 43 H 0.97001 * 119.99561 * 359.97438 * 12 10 9 44 44 H 1.09003 * 110.36576 * 323.74960 * 15 13 12 45 45 H 1.09000 * 110.36852 * 86.07290 * 15 13 12 46 46 H 0.97003 * 120.00046 * 179.97438 * 20 19 17 47 47 H 1.09001 * 109.87944 * 239.55814 * 25 16 15 48 48 H 1.08997 * 109.88001 * 118.39244 * 25 16 15 49 49 H 0.96706 * 113.99589 * 293.52218 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.7076 1.8313 -1.7104 6 6 2.2430 2.0166 1.1672 7 8 2.0404 1.4450 2.2175 8 6 2.7394 3.4395 1.1671 9 6 2.9041 3.9222 2.6095 10 6 3.4011 5.3449 2.6096 11 8 3.6041 5.9163 1.5592 12 7 3.6210 5.9819 3.7767 13 6 4.1036 7.3651 3.7767 14 1 3.6914 7.9206 2.9342 15 6 5.6520 7.4129 3.7689 16 7 5.9919 8.7156 4.3708 17 6 7.1561 9.4080 4.1692 18 1 7.9200 9.0031 3.5220 19 6 7.3543 10.6300 4.7971 20 7 6.4237 11.1229 5.5867 21 14 8.9420 11.5749 4.5216 22 1 9.8185 10.8112 3.5975 23 1 8.6325 12.9002 3.9275 24 1 9.6369 11.7646 5.8201 25 6 4.8738 9.1485 5.2217 26 6 3.7761 8.0685 5.1202 27 1 3.8480 7.3663 5.9508 28 8 2.4798 8.6681 5.0741 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.5819 1.6875 -2.0284 35 1 2.0956 3.1409 -1.1385 36 1 4.3884 2.2154 -0.9507 37 1 3.8746 0.7620 -1.8406 38 1 3.8895 2.3453 -2.6541 39 1 3.7006 3.4889 0.6554 40 1 2.0200 4.0752 0.6511 41 1 1.9429 3.8728 3.1212 42 1 3.6235 3.2864 3.1256 43 1 3.4590 5.5248 4.6167 44 1 6.0597 6.5999 4.3696 45 1 6.0282 7.3565 2.7474 46 1 6.5625 11.9766 6.0258 47 1 4.4873 10.1043 4.8680 48 1 5.2085 9.2410 6.2549 49 1 2.2267 9.1211 5.8902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198933708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:10 Heat of formation + Delta-G solvation = -128.048199 kcal Electronic energy + Delta-G solvation = -28281.209898 eV Core-core repulsion = 24242.806760 eV Total energy + Delta-G solvation = -4038.403137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.35514 -40.74972 -39.38211 -37.23643 -36.67996 -35.55586 -34.26115 -33.59052 -32.65471 -30.54418 -30.15154 -28.86982 -27.02153 -25.95752 -24.45804 -23.62380 -22.40698 -21.90472 -21.32120 -19.82260 -19.12838 -18.65752 -18.22171 -17.52966 -17.35795 -17.25663 -16.83006 -16.47195 -16.06374 -15.71988 -15.38983 -14.95482 -14.83229 -14.80192 -14.49635 -14.42024 -14.20519 -14.03940 -13.74391 -13.54020 -13.45660 -13.17312 -13.16565 -13.05740 -12.81307 -12.77117 -12.71374 -12.54051 -12.28676 -12.05872 -11.90119 -11.89692 -11.86750 -11.53745 -11.13595 -10.83523 -10.80032 -10.77585 -10.14589 -9.71425 -8.97764 -7.89614 -5.26892 1.45306 1.46707 1.57043 1.59053 1.63026 1.86788 2.22784 2.47740 3.12601 3.31101 3.44204 3.54939 3.81516 3.84371 3.99866 4.05990 4.06944 4.10578 4.20540 4.23286 4.25372 4.45385 4.46827 4.52330 4.56700 4.59408 4.62657 4.77299 4.82150 4.84913 4.93516 4.95847 5.01302 5.03053 5.05021 5.29147 5.36293 5.37501 5.43182 5.47713 5.63436 5.65591 6.12741 6.35364 6.54942 6.86111 7.03923 7.13908 7.25458 7.68447 8.30858 9.20364 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.021983 B = 0.002219 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.391295 B =12613.322250 C =13468.512634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.106 3.894 3 N -0.611 5.611 4 C 0.098 3.902 5 C -0.170 4.170 6 C 0.515 3.485 7 O -0.577 6.577 8 C -0.120 4.120 9 C -0.113 4.113 10 C 0.514 3.486 11 O -0.580 6.580 12 N -0.703 5.703 13 C 0.154 3.846 14 H 0.072 0.928 15 C 0.131 3.869 16 N -0.623 5.623 17 C -0.245 4.245 18 H 0.082 0.918 19 C -0.064 4.064 20 N -0.949 5.949 21 Si 0.982 3.018 22 H -0.267 1.267 23 H -0.292 1.292 24 H -0.288 1.288 25 C 0.161 3.839 26 C 0.090 3.910 27 H 0.094 0.906 28 O -0.569 6.569 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.035 0.965 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.417 0.583 44 H 0.042 0.958 45 H 0.035 0.965 46 H 0.249 0.751 47 H 0.020 0.980 48 H 0.026 0.974 49 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.110 -22.474 -10.445 27.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.016 4.016 3 N -0.344 5.344 4 C -0.024 4.024 5 C -0.229 4.229 6 C 0.304 3.696 7 O -0.457 6.457 8 C -0.160 4.160 9 C -0.153 4.153 10 C 0.302 3.698 11 O -0.460 6.460 12 N -0.355 5.355 13 C 0.047 3.953 14 H 0.091 0.909 15 C 0.004 3.996 16 N -0.351 5.351 17 C -0.374 4.374 18 H 0.100 0.900 19 C -0.257 4.257 20 N -0.598 5.598 21 Si 0.810 3.190 22 H -0.191 1.191 23 H -0.219 1.219 24 H -0.215 1.215 25 C 0.035 3.965 26 C 0.029 3.971 27 H 0.112 0.888 28 O -0.376 6.376 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.254 0.746 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.039 0.961 48 H 0.044 0.956 49 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -11.992 -22.459 -11.198 27.814 hybrid contribution 0.877 1.117 1.006 1.740 sum -11.115 -21.343 -10.192 26.133 Atomic orbital electron populations 1.22074 0.95330 1.02947 1.01624 1.21531 0.94807 0.81788 1.03434 1.48173 1.65070 1.14765 1.06358 1.21825 0.97745 0.98236 0.84606 1.22190 0.95960 1.02591 1.02116 1.20830 0.76574 0.88784 0.83373 1.90675 1.53829 1.68967 1.32255 1.21390 1.04488 0.92315 0.97825 1.21316 1.04856 0.90530 0.98573 1.21175 0.76245 0.89297 0.83057 1.90698 1.53488 1.69282 1.32512 1.45732 1.67031 1.13100 1.09655 1.21716 0.93514 0.82516 0.97585 0.90937 1.21952 0.92796 0.88236 0.96599 1.44555 1.16805 1.19847 1.53868 1.19484 0.93483 1.00669 1.23778 0.90025 1.25676 1.01798 0.98643 0.99593 1.70138 1.34692 1.20070 1.34864 0.84966 0.78743 0.78041 0.77295 1.19131 1.21904 1.21457 1.21625 0.86404 0.94329 0.94102 1.23160 0.83101 0.94274 0.96527 0.88829 1.86431 1.32454 1.74930 1.43807 0.91580 0.90209 0.94555 0.88116 0.91680 0.87977 0.89684 0.93612 0.91973 0.90031 0.87867 0.87650 0.87033 0.87060 0.74602 0.94069 0.94632 0.94148 0.96135 0.95634 0.75385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 10.24 71.98 0.74 -1.12 16 2 C 0.11 1.34 6.13 86.38 0.53 1.87 16 3 N -0.61 -9.09 2.47 -821.80 -2.03 -11.12 16 4 C 0.10 0.96 5.94 86.38 0.51 1.47 16 5 C -0.17 -1.67 10.24 71.98 0.74 -0.94 16 6 C 0.52 10.49 7.67 87.66 0.67 11.16 16 7 O -0.58 -15.48 15.56 -3.04 -0.05 -15.52 16 8 C -0.12 -2.31 3.54 29.85 0.11 -2.20 16 9 C -0.11 -2.31 4.99 29.85 0.15 -2.16 16 10 C 0.51 14.46 7.83 87.66 0.69 15.15 16 11 O -0.58 -21.00 15.67 -3.04 -0.05 -21.05 16 12 N -0.70 -19.54 5.21 -435.98 -2.27 -21.81 16 13 C 0.15 5.70 3.09 46.38 0.14 5.85 16 14 H 0.07 3.19 7.64 -2.38 -0.02 3.17 16 15 C 0.13 5.61 6.93 86.85 0.60 6.21 16 16 N -0.62 -32.60 3.40 -691.85 -2.35 -34.95 16 17 C -0.25 -14.00 10.28 84.03 0.86 -13.14 16 18 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 19 C -0.06 -3.66 5.49 84.86 0.47 -3.19 16 20 N -0.95 -56.59 10.31 21.65 0.22 -56.37 16 21 Si 0.98 46.04 29.55 68.60 2.03 48.07 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 25 C 0.16 7.83 5.15 86.73 0.45 8.27 16 26 C 0.09 3.21 3.97 31.78 0.13 3.34 16 27 H 0.09 2.75 8.00 -2.39 -0.02 2.73 16 28 O -0.57 -18.93 13.39 -148.98 -1.99 -20.92 16 29 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.04 0.59 8.14 -2.39 -0.02 0.58 16 32 H 0.10 0.75 8.07 -2.39 -0.02 0.73 16 33 H 0.06 1.08 7.42 -2.38 -0.02 1.06 16 34 H 0.10 0.57 8.07 -2.39 -0.02 0.55 16 35 H 0.08 0.87 6.43 -2.39 -0.02 0.85 16 36 H 0.04 0.60 7.24 -2.39 -0.02 0.58 16 37 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.10 1.97 7.17 -2.38 -0.02 1.96 16 40 H 0.11 1.94 7.35 -2.39 -0.02 1.92 16 41 H 0.11 2.07 8.10 -2.38 -0.02 2.05 16 42 H 0.11 2.09 8.10 -2.39 -0.02 2.07 16 43 H 0.42 8.65 8.54 -92.71 -0.79 7.86 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 47 H 0.02 1.14 7.30 -2.39 -0.02 1.13 16 48 H 0.03 1.34 7.50 -2.39 -0.02 1.32 16 49 H 0.40 9.76 9.12 -74.05 -0.68 9.08 16 Total: -1.00 -78.29 397.55 -0.23 -78.52 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -0.51 Total: 24.59 kcal Atomic # 6 Polarization: 23.80 SS G_CDS: 6.78 Total: 30.58 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -6.43 Total: -124.25 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: -2.09 Total: -57.50 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -78.29 -0.23 -78.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198933708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.526 kcal (2) G-P(sol) polarization free energy of solvation -78.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds