Wall clock time and date at job start Tue Mar 31 2020 04:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46899 * 2 1 4 4 N 1.46500 * 109.46974 * 240.00439 * 2 1 3 5 5 C 1.34773 * 120.00432 * 84.99591 * 4 2 1 6 6 O 1.21353 * 120.00047 * 0.02562 * 5 4 2 7 7 C 1.49454 * 120.00135 * 179.72278 * 5 4 2 8 8 O 1.21343 * 119.99752 * 0.28157 * 7 5 4 9 9 N 1.34777 * 120.00164 * 180.27489 * 7 5 4 10 10 C 1.46499 * 120.00065 * 180.02562 * 9 7 5 11 11 C 1.52996 * 109.46959 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47296 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99974 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00612 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99512 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00323 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47213 * 60.00237 * 16 14 12 18 18 H 1.48502 * 109.47317 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47081 * 299.99865 * 16 14 12 20 20 C 1.52994 * 109.47019 * 120.00199 * 2 1 3 21 21 H 1.09002 * 109.46715 * 185.00067 * 20 2 1 22 22 C 1.53000 * 109.47346 * 65.00149 * 20 2 1 23 23 N 1.46899 * 109.47070 * 304.99641 * 20 2 1 24 24 C 1.47012 * 111.00179 * 303.63442 * 23 20 2 25 25 C 1.53092 * 109.25627 * 177.60579 * 24 23 20 26 26 O 1.43018 * 109.25936 * 56.85328 * 25 24 23 27 27 C 1.43014 * 113.73882 * 301.32823 * 26 25 24 28 28 C 1.47013 * 110.99761 * 180.02562 * 23 20 2 29 29 H 1.08998 * 109.47131 * 59.99895 * 1 2 3 30 30 H 1.08994 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46937 * 299.99956 * 1 2 3 32 32 H 0.97001 * 119.99454 * 265.00326 * 4 2 1 33 33 H 0.97000 * 119.99555 * 0.02562 * 9 7 5 34 34 H 1.08994 * 109.46952 * 300.00262 * 10 9 7 35 35 H 1.08998 * 109.47023 * 60.00193 * 10 9 7 36 36 H 1.09000 * 109.47439 * 300.00104 * 11 10 9 37 37 H 1.08998 * 109.47408 * 60.00046 * 11 10 9 38 38 H 0.96999 * 119.99804 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.47218 * 179.97438 * 22 20 2 40 40 H 1.09004 * 109.46631 * 299.99683 * 22 20 2 41 41 H 1.09000 * 109.47318 * 59.99706 * 22 20 2 42 42 H 1.08998 * 109.51170 * 297.54703 * 24 23 20 43 43 H 1.09001 * 109.50497 * 57.67805 * 24 23 20 44 44 H 1.09002 * 109.51033 * 296.91793 * 25 24 23 45 45 H 1.09008 * 109.54142 * 176.80900 * 25 24 23 46 46 H 1.08998 * 109.50477 * 298.73414 * 27 26 25 47 47 H 1.08993 * 109.54629 * 178.62555 * 27 26 25 48 48 H 1.09003 * 109.50978 * 302.33058 * 28 23 20 49 49 H 1.09006 * 109.50685 * 62.42061 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8588 1.1593 -2.4116 7 6 2.6510 -0.7212 -3.5760 8 8 2.9396 -1.8986 -3.5215 9 7 2.7849 -0.0475 -4.7356 10 6 3.2785 -0.7367 -5.9304 11 6 3.3358 0.2479 -7.1000 12 6 3.8429 -0.4612 -8.3292 13 1 4.0991 -1.5092 -8.2810 14 6 3.9798 0.2280 -9.5156 15 7 3.6683 1.5044 -9.5742 16 14 4.6090 -0.6509 -11.0390 17 1 3.6941 -1.7703 -11.3781 18 1 4.6645 0.3048 -12.1744 19 1 5.9692 -1.1855 -10.7758 20 6 2.0400 -0.7213 1.2492 21 1 3.1263 -0.6443 1.2950 22 6 1.6353 -2.1955 1.1879 23 7 1.4543 -0.1020 2.4456 24 6 1.7509 1.3372 2.4927 25 6 1.0735 1.9523 3.7201 26 8 1.5173 1.2693 4.8957 27 6 1.2440 -0.1344 4.8838 28 6 1.9235 -0.7703 3.6680 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6317 -1.1527 33 1 2.5545 0.8937 -4.7790 34 1 4.2767 -1.1292 -5.7370 35 1 2.6069 -1.5584 -6.1793 36 1 2.3377 0.6408 -7.2934 37 1 4.0076 1.0693 -6.8509 38 1 3.7642 1.9891 -10.4089 39 1 1.9990 -2.7094 2.0776 40 1 0.5489 -2.2724 1.1420 41 1 2.0699 -2.6550 0.3001 42 1 2.8288 1.4847 2.5596 43 1 1.3726 1.8165 1.5898 44 1 -0.0079 1.8523 3.6275 45 1 1.3367 3.0077 3.7912 46 1 0.1675 -0.2951 4.8249 47 1 1.6305 -0.5890 5.7959 48 1 1.6713 -1.8299 3.6233 49 1 3.0042 -0.6567 3.7531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328640607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:21 Heat of formation + Delta-G solvation = -113.223647 kcal Electronic energy + Delta-G solvation = -28148.314962 eV Core-core repulsion = 24110.554665 eV Total energy + Delta-G solvation = -4037.760296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.83417 -40.07512 -38.55466 -37.46606 -35.39100 -34.70775 -32.87979 -31.89271 -31.63143 -29.86871 -29.56859 -27.13082 -25.94852 -24.97099 -24.08353 -23.14056 -21.30878 -21.02890 -20.30314 -19.91943 -18.38525 -17.25739 -16.74237 -16.56697 -16.29450 -15.94425 -15.86754 -15.60210 -15.42182 -15.05188 -14.73430 -14.59466 -14.41452 -14.24335 -14.17301 -13.54821 -13.25800 -12.93658 -12.81747 -12.51285 -12.40686 -12.32674 -12.20218 -11.98256 -11.81975 -11.56446 -11.40287 -11.24986 -11.05876 -10.94900 -10.82820 -10.69640 -10.40464 -10.12258 -9.81325 -9.47034 -9.41024 -9.21761 -8.88738 -8.71479 -8.42727 -6.11061 -4.14886 1.58908 2.43075 3.22000 3.29746 3.34045 3.36738 3.40886 3.44780 3.88157 4.12243 4.39036 4.40628 4.43513 4.52218 4.69655 4.69910 4.72780 4.83525 4.84173 5.02188 5.12160 5.14403 5.18396 5.22466 5.25673 5.30493 5.40207 5.47552 5.50718 5.56661 5.69095 5.80535 6.08070 6.15151 6.16788 6.22050 6.43711 6.45287 6.57576 6.67479 6.69276 7.02771 7.45058 7.56421 7.64706 7.85892 7.90712 8.19675 8.32108 8.90407 9.49939 11.00345 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.035598 B = 0.001846 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.364481 B =15162.415007 C =15599.699269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.145 3.855 3 H 0.091 0.909 4 N -0.702 5.702 5 C 0.510 3.490 6 O -0.519 6.519 7 C 0.497 3.503 8 O -0.534 6.534 9 N -0.686 5.686 10 C 0.119 3.881 11 C 0.011 3.989 12 C -0.524 4.524 13 H 0.060 0.940 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.899 3.101 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.074 3.926 21 H 0.051 0.949 22 C -0.154 4.154 23 N -0.523 5.523 24 C 0.008 3.992 25 C 0.065 3.935 26 O -0.387 6.387 27 C 0.065 3.935 28 C 0.014 3.986 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.411 0.589 33 H 0.411 0.589 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.045 0.955 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.099 0.901 46 H 0.060 0.940 47 H 0.097 0.903 48 H 0.091 0.909 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.413 -3.148 29.591 30.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.109 0.891 4 N -0.358 5.358 5 C 0.291 3.709 6 O -0.394 6.394 7 C 0.276 3.724 8 O -0.412 6.412 9 N -0.336 5.336 10 C -0.003 4.003 11 C -0.026 4.026 12 C -0.563 4.563 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.530 5.530 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.034 4.034 21 H 0.069 0.931 22 C -0.211 4.211 23 N -0.250 5.250 24 C -0.120 4.120 25 C -0.012 4.012 26 O -0.305 6.305 27 C -0.012 4.012 28 C -0.114 4.114 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.249 0.751 33 H 0.246 0.754 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.112 0.888 44 H 0.079 0.921 45 H 0.117 0.883 46 H 0.078 0.922 47 H 0.115 0.885 48 H 0.110 0.890 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.826 -2.938 29.557 30.476 hybrid contribution 1.157 -0.443 -1.151 1.691 sum -5.668 -3.381 28.406 29.162 Atomic orbital electron populations 1.22114 0.93805 1.02729 1.02722 1.21008 0.95561 0.96831 0.82556 0.89107 1.45905 1.66151 1.14997 1.08730 1.20462 0.78610 0.87003 0.84831 1.90752 1.48399 1.15408 1.84835 1.19972 0.80497 0.87165 0.84732 1.90724 1.50164 1.15354 1.84983 1.46237 1.62792 1.15080 1.09517 1.21938 0.98381 0.96948 0.83034 1.19351 0.98238 0.94224 0.90824 1.20970 1.44659 0.96593 0.94076 0.92221 1.25005 0.95283 0.94891 0.99102 1.69948 1.47952 1.08099 1.27036 0.86548 0.79484 0.79323 0.82022 1.20101 1.21221 1.20118 1.21817 0.97007 0.95222 0.89395 0.93136 1.21996 1.03240 0.93730 1.02172 1.62229 1.58702 1.02582 1.01438 1.22936 0.99735 0.88927 1.00425 1.22670 0.98586 0.96368 0.83570 1.87998 1.82111 1.20345 1.40068 1.22657 0.99877 0.81354 0.97360 1.22867 0.98384 0.99911 0.90190 0.92344 0.92072 0.90412 0.75122 0.75377 0.91873 0.91841 0.95650 0.95670 0.92707 0.91892 0.90734 0.91661 0.93638 0.88812 0.92085 0.88306 0.92153 0.88479 0.89035 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 8.90 37.16 0.33 -1.05 16 2 C 0.14 1.34 1.87 -67.93 -0.13 1.22 16 3 H 0.09 0.95 6.03 -51.93 -0.31 0.64 16 4 N -0.70 -7.86 4.98 -54.23 -0.27 -8.13 16 5 C 0.51 7.47 7.85 -11.59 -0.09 7.38 16 6 O -0.52 -8.52 16.14 5.49 0.09 -8.43 16 7 C 0.50 8.45 7.89 -11.58 -0.09 8.36 16 8 O -0.53 -9.95 16.48 5.50 0.09 -9.86 16 9 N -0.69 -12.40 5.55 -60.74 -0.34 -12.74 16 10 C 0.12 2.46 5.61 -4.04 -0.02 2.44 16 11 C 0.01 0.27 5.09 -27.89 -0.14 0.13 16 12 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 16 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C 0.07 0.55 2.10 -67.72 -0.14 0.41 16 21 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 22 C -0.15 -0.97 8.48 37.16 0.32 -0.65 16 23 N -0.52 -3.59 3.69 -226.33 -0.84 -4.42 16 24 C 0.01 0.05 4.96 -3.72 -0.02 0.04 16 25 C 0.07 0.43 7.01 37.21 0.26 0.69 16 26 O -0.39 -3.20 10.83 -35.23 -0.38 -3.58 16 27 C 0.06 0.39 7.01 37.21 0.26 0.65 16 28 C 0.01 0.09 5.33 -3.71 -0.02 0.07 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 31 H 0.08 0.62 6.93 -51.93 -0.36 0.26 16 32 H 0.41 4.20 6.05 -40.82 -0.25 3.96 16 33 H 0.41 7.09 7.94 -40.82 -0.32 6.77 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.06 0.33 6.36 -51.93 -0.33 0.00 16 40 H 0.07 0.48 6.57 -51.93 -0.34 0.14 16 41 H 0.06 0.42 6.29 -51.93 -0.33 0.09 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.66 5.84 -51.93 -0.30 0.35 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.10 0.54 8.14 -51.92 -0.42 0.11 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 0.44 6.19 -51.93 -0.32 0.12 16 49 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 387.00 15.07 5.83 5.83 Total: -1.00 -31.47 387.00 -7.82 -39.29 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.82 Total: 4.58 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 0.10 Total: 6.56 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -0.71 Total: -50.58 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.20 Total: -21.88 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.47 -7.82 -39.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328640607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.935 kcal (2) G-P(sol) polarization free energy of solvation -31.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds