Wall clock time and date at job start Tue Mar 31 2020 04:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46899 * 2 1 4 4 N 1.46500 * 109.46974 * 240.00439 * 2 1 3 5 5 C 1.34773 * 120.00432 * 84.99591 * 4 2 1 6 6 O 1.21353 * 120.00047 * 0.02562 * 5 4 2 7 7 C 1.49454 * 120.00135 * 179.72278 * 5 4 2 8 8 O 1.21343 * 119.99752 * 0.28157 * 7 5 4 9 9 N 1.34777 * 120.00164 * 180.27489 * 7 5 4 10 10 C 1.46499 * 120.00065 * 180.02562 * 9 7 5 11 11 C 1.52996 * 109.46959 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47296 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99974 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00612 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99512 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00323 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47213 * 60.00237 * 16 14 12 18 18 H 1.48502 * 109.47317 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47081 * 299.99865 * 16 14 12 20 20 C 1.52994 * 109.47019 * 120.00199 * 2 1 3 21 21 H 1.09002 * 109.46715 * 185.00067 * 20 2 1 22 22 C 1.53000 * 109.47346 * 65.00149 * 20 2 1 23 23 N 1.46899 * 109.47070 * 304.99641 * 20 2 1 24 24 C 1.47012 * 111.00179 * 303.63442 * 23 20 2 25 25 C 1.53092 * 109.25627 * 177.60579 * 24 23 20 26 26 O 1.43018 * 109.25936 * 56.85328 * 25 24 23 27 27 C 1.43014 * 113.73882 * 301.32823 * 26 25 24 28 28 C 1.47013 * 110.99761 * 180.02562 * 23 20 2 29 29 H 1.08998 * 109.47131 * 59.99895 * 1 2 3 30 30 H 1.08994 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46937 * 299.99956 * 1 2 3 32 32 H 0.97001 * 119.99454 * 265.00326 * 4 2 1 33 33 H 0.97000 * 119.99555 * 0.02562 * 9 7 5 34 34 H 1.08994 * 109.46952 * 300.00262 * 10 9 7 35 35 H 1.08998 * 109.47023 * 60.00193 * 10 9 7 36 36 H 1.09000 * 109.47439 * 300.00104 * 11 10 9 37 37 H 1.08998 * 109.47408 * 60.00046 * 11 10 9 38 38 H 0.96999 * 119.99804 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.47218 * 179.97438 * 22 20 2 40 40 H 1.09004 * 109.46631 * 299.99683 * 22 20 2 41 41 H 1.09000 * 109.47318 * 59.99706 * 22 20 2 42 42 H 1.08998 * 109.51170 * 297.54703 * 24 23 20 43 43 H 1.09001 * 109.50497 * 57.67805 * 24 23 20 44 44 H 1.09002 * 109.51033 * 296.91793 * 25 24 23 45 45 H 1.09008 * 109.54142 * 176.80900 * 25 24 23 46 46 H 1.08998 * 109.50477 * 298.73414 * 27 26 25 47 47 H 1.08993 * 109.54629 * 178.62555 * 27 26 25 48 48 H 1.09003 * 109.50978 * 302.33058 * 28 23 20 49 49 H 1.09006 * 109.50685 * 62.42061 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8588 1.1593 -2.4116 7 6 2.6510 -0.7212 -3.5760 8 8 2.9396 -1.8986 -3.5215 9 7 2.7849 -0.0475 -4.7356 10 6 3.2785 -0.7367 -5.9304 11 6 3.3358 0.2479 -7.1000 12 6 3.8429 -0.4612 -8.3292 13 1 4.0991 -1.5092 -8.2810 14 6 3.9798 0.2280 -9.5156 15 7 3.6683 1.5044 -9.5742 16 14 4.6090 -0.6509 -11.0390 17 1 3.6941 -1.7703 -11.3781 18 1 4.6645 0.3048 -12.1744 19 1 5.9692 -1.1855 -10.7758 20 6 2.0400 -0.7213 1.2492 21 1 3.1263 -0.6443 1.2950 22 6 1.6353 -2.1955 1.1879 23 7 1.4543 -0.1020 2.4456 24 6 1.7509 1.3372 2.4927 25 6 1.0735 1.9523 3.7201 26 8 1.5173 1.2693 4.8957 27 6 1.2440 -0.1344 4.8838 28 6 1.9235 -0.7703 3.6680 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6317 -1.1527 33 1 2.5545 0.8937 -4.7790 34 1 4.2767 -1.1292 -5.7370 35 1 2.6069 -1.5584 -6.1793 36 1 2.3377 0.6408 -7.2934 37 1 4.0076 1.0693 -6.8509 38 1 3.7642 1.9891 -10.4089 39 1 1.9990 -2.7094 2.0776 40 1 0.5489 -2.2724 1.1420 41 1 2.0699 -2.6550 0.3001 42 1 2.8288 1.4847 2.5596 43 1 1.3726 1.8165 1.5898 44 1 -0.0079 1.8523 3.6275 45 1 1.3367 3.0077 3.7912 46 1 0.1675 -0.2951 4.8249 47 1 1.6305 -0.5890 5.7959 48 1 1.6713 -1.8299 3.6233 49 1 3.0042 -0.6567 3.7531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328640607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:20 Heat of formation + Delta-G solvation = -137.345889 kcal Electronic energy + Delta-G solvation = -28149.360981 eV Core-core repulsion = 24110.554665 eV Total energy + Delta-G solvation = -4038.806315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.90371 -40.87407 -39.73949 -38.30343 -36.86745 -35.75874 -34.81724 -32.44255 -32.40238 -31.69808 -30.27929 -27.67190 -27.51059 -26.02263 -25.04915 -24.08903 -22.86306 -21.88104 -21.51517 -20.68027 -19.61893 -18.59699 -18.03432 -17.49635 -17.20934 -17.08778 -16.72389 -16.59297 -16.45691 -16.19199 -15.91662 -15.75528 -15.51511 -15.13660 -14.93905 -14.77642 -14.60307 -14.30481 -13.84231 -13.44560 -13.27726 -13.18023 -13.07831 -12.93261 -12.84446 -12.70245 -12.59980 -12.54907 -12.30346 -12.27890 -12.09170 -11.69198 -11.50191 -11.46279 -11.43152 -10.74489 -10.63798 -10.61421 -10.40515 -10.21439 -9.45711 -8.23645 -6.34996 0.29469 1.25123 1.43290 1.45331 1.53465 2.09380 2.38096 2.51623 2.80848 2.97946 3.11186 3.39479 3.47349 3.77331 3.93017 4.00627 4.07166 4.19700 4.26229 4.33136 4.37673 4.41461 4.44207 4.52010 4.57304 4.67859 4.71928 4.73571 4.80232 4.82086 4.89863 4.92859 5.00147 5.03444 5.06221 5.20520 5.27629 5.39714 5.41566 5.54054 5.74648 5.86575 5.87872 5.92838 6.12280 6.20197 6.33335 6.68267 6.78922 6.90387 7.34464 8.88100 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.035598 B = 0.001846 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.364481 B =15162.415007 C =15599.699269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.144 3.856 3 H 0.080 0.920 4 N -0.683 5.683 5 C 0.516 3.484 6 O -0.539 6.539 7 C 0.500 3.500 8 O -0.548 6.548 9 N -0.688 5.688 10 C 0.138 3.862 11 C 0.018 3.982 12 C -0.546 4.546 13 H 0.065 0.935 14 C 0.004 3.996 15 N -0.928 5.928 16 Si 0.968 3.032 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.267 1.267 20 C 0.081 3.919 21 H 0.045 0.955 22 C -0.152 4.152 23 N -0.522 5.522 24 C 0.009 3.991 25 C 0.065 3.935 26 O -0.408 6.408 27 C 0.062 3.938 28 C 0.016 3.984 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.418 0.582 33 H 0.414 0.586 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.008 0.992 37 H 0.007 0.993 38 H 0.265 0.735 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.092 0.908 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.112 0.888 48 H 0.108 0.892 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.588 -4.622 30.690 31.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.040 3.960 3 H 0.098 0.902 4 N -0.338 5.338 5 C 0.297 3.703 6 O -0.416 6.416 7 C 0.280 3.720 8 O -0.427 6.427 9 N -0.339 5.339 10 C 0.015 3.985 11 C -0.019 4.019 12 C -0.584 4.584 13 H 0.083 0.917 14 C -0.194 4.194 15 N -0.567 5.567 16 Si 0.792 3.208 17 H -0.192 1.192 18 H -0.209 1.209 19 H -0.192 1.192 20 C -0.028 4.028 21 H 0.063 0.937 22 C -0.210 4.210 23 N -0.248 5.248 24 C -0.119 4.119 25 C -0.012 4.012 26 O -0.327 6.327 27 C -0.015 4.015 28 C -0.112 4.112 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.257 0.743 33 H 0.251 0.749 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.110 0.890 44 H 0.084 0.916 45 H 0.125 0.875 46 H 0.083 0.917 47 H 0.130 0.870 48 H 0.126 0.874 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.007 -4.440 30.705 31.806 hybrid contribution 1.192 0.015 -1.392 1.832 sum -5.815 -4.425 29.314 30.211 Atomic orbital electron populations 1.22044 0.93098 1.03157 1.02273 1.21145 0.95986 0.96394 0.82433 0.90215 1.45886 1.64551 1.15226 1.08183 1.19960 0.78896 0.86603 0.84884 1.90756 1.49724 1.16081 1.85041 1.20329 0.79686 0.86940 0.85001 1.90712 1.50638 1.16020 1.85308 1.46075 1.63247 1.15267 1.09353 1.21483 0.98447 0.95741 0.82813 1.19175 0.96500 0.94345 0.91902 1.21420 1.44629 0.97119 0.95234 0.91662 1.25928 0.95417 0.95616 1.02488 1.70072 1.49042 1.09630 1.27964 0.85451 0.79191 0.78234 0.77881 1.19165 1.20877 1.19211 1.21727 0.96567 0.95824 0.88653 0.93738 1.21999 1.03406 0.92682 1.02866 1.62264 1.58503 1.02467 1.01586 1.22919 0.99127 0.89244 1.00654 1.22731 0.98749 0.96756 0.82921 1.87971 1.82428 1.21586 1.40703 1.22809 1.00271 0.80403 0.97999 1.22921 0.97912 1.00710 0.89666 0.94319 0.91169 0.89280 0.74286 0.74940 0.91995 0.91943 0.97410 0.97443 0.92577 0.90460 0.90496 0.91758 0.94693 0.88973 0.91591 0.87481 0.91685 0.86984 0.87427 0.94582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.90 71.98 0.64 -1.79 16 2 C 0.14 2.52 1.87 44.99 0.08 2.60 16 3 H 0.08 1.63 6.03 -2.39 -0.01 1.62 16 4 N -0.68 -14.55 4.98 -443.86 -2.21 -16.76 16 5 C 0.52 14.85 7.85 87.27 0.69 15.53 16 6 O -0.54 -17.63 16.14 -3.26 -0.05 -17.68 16 7 C 0.50 16.77 7.89 87.27 0.69 17.46 16 8 O -0.55 -19.92 16.48 -3.23 -0.05 -19.97 16 9 N -0.69 -24.99 5.55 -464.43 -2.58 -27.57 16 10 C 0.14 5.75 5.61 86.38 0.48 6.24 16 11 C 0.02 0.92 5.09 29.85 0.15 1.07 16 12 C -0.55 -30.04 9.11 25.60 0.23 -29.80 16 13 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 14 C 0.00 0.24 5.46 84.66 0.46 0.70 16 15 N -0.93 -54.75 13.29 21.45 0.28 -54.47 16 16 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 C 0.08 1.07 2.10 44.91 0.09 1.16 16 21 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 22 C -0.15 -1.55 8.48 71.98 0.61 -0.94 16 23 N -0.52 -6.32 3.69 -869.99 -3.21 -9.53 16 24 C 0.01 0.11 4.96 86.31 0.43 0.54 16 25 C 0.07 0.80 7.01 72.01 0.50 1.30 16 26 O -0.41 -6.26 10.83 -148.98 -1.61 -7.88 16 27 C 0.06 0.63 7.01 72.02 0.50 1.13 16 28 C 0.02 0.16 5.33 86.32 0.46 0.62 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 1.03 6.57 -2.39 -0.02 1.02 16 31 H 0.09 1.28 6.93 -2.39 -0.02 1.26 16 32 H 0.42 7.90 6.05 -92.71 -0.56 7.34 16 33 H 0.41 14.54 7.94 -92.71 -0.74 13.80 16 34 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 39 H 0.08 0.59 6.36 -2.39 -0.02 0.57 16 40 H 0.08 0.78 6.57 -2.38 -0.02 0.76 16 41 H 0.06 0.68 6.29 -2.39 -0.02 0.67 16 42 H 0.03 0.53 8.14 -2.39 -0.02 0.52 16 43 H 0.09 1.24 5.84 -2.39 -0.01 1.22 16 44 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 46 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.11 0.73 6.19 -2.39 -0.01 0.72 16 49 H 0.04 0.43 8.14 -2.38 -0.02 0.41 16 Total: -1.00 -66.54 387.00 -1.70 -68.24 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: -0.32 Total: 24.52 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 6.03 Total: 15.83 kcal Atomic # 7 Polarization: -100.62 SS G_CDS: -7.72 Total: -108.33 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -1.72 Total: -45.53 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -66.54 -1.70 -68.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328640607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.105 kcal (2) G-P(sol) polarization free energy of solvation -66.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds