Wall clock time and date at job start Tue Mar 31 2020 04:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00424 * 2 1 4 4 H 1.08998 * 109.46683 * 29.99965 * 3 2 1 5 5 C 1.53002 * 109.47100 * 270.00194 * 3 2 1 6 6 C 1.52999 * 109.47353 * 150.00072 * 3 2 1 7 7 C 1.53002 * 109.47117 * 295.00068 * 6 3 2 8 8 C 1.50694 * 109.47254 * 179.97438 * 7 6 3 9 9 O 1.21285 * 119.99946 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00038 * 180.02562 * 8 7 6 11 11 C 1.47019 * 125.65013 * 0.02562 * 10 8 7 12 12 C 1.54322 * 107.27223 * 181.03860 * 11 10 8 13 13 C 1.55154 * 102.94204 * 22.19795 * 12 11 10 14 14 H 1.08999 * 111.00353 * 82.56825 * 13 12 11 15 15 N 1.46905 * 111.00511 * 206.42293 * 13 12 11 16 16 C 1.46905 * 110.99514 * 267.19338 * 15 13 12 17 17 C 1.50704 * 109.46854 * 179.97438 * 16 15 13 18 18 O 1.21292 * 119.99413 * 0.02562 * 17 16 15 19 19 N 1.34770 * 119.99976 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99788 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99896 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99712 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99758 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00298 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.47062 * 89.99612 * 24 22 20 26 26 H 1.48491 * 109.47386 * 210.00183 * 24 22 20 27 27 H 1.48498 * 109.46927 * 330.00241 * 24 22 20 28 28 C 1.47426 * 125.64777 * 179.97438 * 10 8 7 29 29 H 1.09006 * 109.47048 * 59.99668 * 1 2 3 30 30 H 1.09003 * 109.47250 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46715 * 300.00303 * 1 2 3 32 32 H 1.09003 * 109.46830 * 299.99818 * 5 3 2 33 33 H 1.08998 * 109.47195 * 59.99836 * 5 3 2 34 34 H 1.09000 * 109.46998 * 180.02562 * 5 3 2 35 35 H 1.08994 * 109.47038 * 174.99871 * 6 3 2 36 36 H 1.09001 * 109.47180 * 54.99867 * 6 3 2 37 37 H 1.09006 * 109.47064 * 59.99712 * 7 6 3 38 38 H 1.08996 * 109.47239 * 300.00293 * 7 6 3 39 39 H 1.09001 * 109.88389 * 300.46361 * 11 10 8 40 40 H 1.09004 * 109.87600 * 61.47318 * 11 10 8 41 41 H 1.08999 * 110.71849 * 140.55494 * 12 11 10 42 42 H 1.08995 * 110.72403 * 263.65428 * 12 11 10 43 43 H 1.00897 * 110.99686 * 31.14471 * 15 13 12 44 44 H 1.09000 * 109.47399 * 300.00002 * 16 15 13 45 45 H 1.09002 * 109.47116 * 60.00238 * 16 15 13 46 46 H 0.96995 * 119.99996 * 0.02562 * 19 17 16 47 47 H 0.97003 * 120.00157 * 179.97438 * 23 22 20 48 48 H 1.08998 * 110.36718 * 274.72906 * 28 10 8 49 49 H 1.09005 * 110.36600 * 37.05467 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3590 1.2632 0.7212 7 6 3.1384 0.9183 2.1955 8 6 4.4668 0.8761 2.9057 9 8 5.4893 1.1002 2.2932 10 7 4.5186 0.5892 4.2216 11 6 3.3620 0.2982 5.0813 12 6 3.9003 0.0568 6.5073 13 6 5.2721 0.7815 6.4882 14 1 5.1523 1.8495 6.6701 15 7 6.1968 0.1842 7.4610 16 6 6.1289 0.8847 8.7505 17 6 7.0884 0.2451 9.7207 18 8 7.7627 -0.7010 9.3721 19 7 7.1972 0.7242 10.9757 20 6 8.0697 0.1419 11.8585 21 1 8.6701 -0.7004 11.5481 22 6 8.1822 0.6362 13.1522 23 7 9.0188 0.0784 13.9982 24 14 7.1442 2.0937 13.6888 25 1 5.8600 1.6058 14.2527 26 1 7.8761 2.8688 14.7225 27 1 6.8714 2.9649 12.5177 28 6 5.7445 0.5143 5.0370 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.8830 1.0773 -1.9563 33 1 1.2569 1.8014 -1.9563 34 1 2.6616 2.7669 -1.4425 35 1 3.8428 2.2368 0.6443 36 1 3.9931 0.5050 0.2617 37 1 2.6545 -0.0554 2.2724 38 1 2.5042 1.6764 2.6550 39 1 2.6778 1.1467 5.0820 40 1 2.8474 -0.5926 4.7211 41 1 3.2389 0.5030 7.2499 42 1 4.0269 -1.0092 6.6965 43 1 6.0145 -0.8016 7.5750 44 1 6.3978 1.9316 8.6098 45 1 5.1154 0.8199 9.1463 46 1 6.6577 1.4805 11.2545 47 1 9.0977 0.4237 14.9013 48 1 6.1915 -0.4768 4.9597 49 1 6.4562 1.2780 4.7231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689790621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:58 Heat of formation + Delta-G solvation = -116.132226 kcal Electronic energy + Delta-G solvation = -27296.919036 eV Core-core repulsion = 23259.032614 eV Total energy + Delta-G solvation = -4037.886422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.36960 -38.96428 -38.53883 -37.74672 -34.85764 -34.11393 -33.87029 -31.70718 -31.17957 -30.37478 -29.00375 -27.18082 -26.49443 -24.91482 -23.62356 -23.07600 -21.50227 -21.00631 -19.43734 -19.35260 -18.41713 -17.49834 -17.27025 -16.66235 -16.06876 -15.87588 -15.56526 -15.39080 -15.14193 -14.96200 -14.82963 -14.16231 -13.83425 -13.66409 -13.61203 -13.36832 -13.12064 -13.00760 -12.95959 -12.79919 -12.56675 -12.52574 -12.14409 -12.08671 -11.95349 -11.78152 -11.67359 -11.51560 -11.44045 -11.18438 -11.04956 -10.99552 -10.61936 -10.13839 -9.99864 -9.95688 -9.59788 -8.87317 -8.62587 -8.24261 -8.18587 -6.32996 -3.84676 2.45761 2.70709 3.00599 3.04205 3.13255 3.32993 3.70472 3.94319 4.08066 4.11871 4.34713 4.36141 4.48791 4.61499 4.64515 4.78329 4.83138 4.86435 4.88633 4.90266 5.02683 5.06534 5.13069 5.18336 5.19932 5.21175 5.27195 5.32900 5.45419 5.49258 5.55651 5.61656 5.69457 5.71715 5.74808 5.81716 5.85091 5.88876 5.93113 6.05943 6.76367 6.99135 7.30407 7.46363 7.55706 7.97740 8.12230 8.57194 8.92800 9.39988 9.79668 10.80061 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.033553 B = 0.001701 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.306338 B =16457.778150 C =16680.162046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.084 3.916 4 H 0.061 0.939 5 C -0.175 4.175 6 C -0.102 4.102 7 C -0.133 4.133 8 C 0.528 3.472 9 O -0.540 6.540 10 N -0.621 5.621 11 C 0.105 3.895 12 C -0.166 4.166 13 C 0.078 3.922 14 H 0.093 0.907 15 N -0.656 5.656 16 C 0.050 3.950 17 C 0.449 3.551 18 O -0.564 6.564 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.115 3.885 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.356 0.644 44 H 0.088 0.912 45 H 0.047 0.953 46 H 0.370 0.630 47 H 0.274 0.726 48 H 0.076 0.924 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.274 5.614 -24.507 33.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C 0.026 3.974 4 H 0.079 0.921 5 C -0.232 4.232 6 C -0.140 4.140 7 C -0.173 4.173 8 C 0.317 3.683 9 O -0.417 6.417 10 N -0.357 5.357 11 C -0.018 4.018 12 C -0.206 4.206 13 C -0.034 4.034 14 H 0.111 0.889 15 N -0.288 5.288 16 C -0.083 4.083 17 C 0.234 3.766 18 O -0.446 6.446 19 N -0.229 5.229 20 C -0.435 4.435 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.007 4.007 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.177 0.823 44 H 0.107 0.893 45 H 0.065 0.935 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.488 5.279 -25.140 32.858 hybrid contribution -1.965 1.079 1.110 2.502 sum -22.454 6.358 -24.030 33.496 Atomic orbital electron populations 1.22785 0.81271 1.02757 0.99845 1.87951 1.19442 1.27861 1.95076 1.22205 0.94818 0.84610 0.95763 0.92122 1.22269 1.02322 1.01961 0.96685 1.21479 0.95660 1.03906 0.92906 1.21615 0.94988 1.04484 0.96224 1.20380 0.91627 0.76134 0.80172 1.90723 1.36568 1.49427 1.64974 1.48519 1.08947 1.69918 1.08280 1.21959 0.88789 1.00780 0.90316 1.23442 0.99035 1.02341 0.95794 1.22748 0.89048 0.99240 0.92320 0.88915 1.59884 1.52614 1.07999 1.08311 1.21741 0.97882 0.99169 0.89520 1.19678 0.87140 0.87005 0.82762 1.90578 1.47404 1.29580 1.77005 1.42196 1.38841 1.30795 1.11067 1.19440 1.17647 1.15247 0.91138 0.86254 1.25042 0.97231 0.98083 0.95772 1.69621 1.35423 1.40967 1.06009 0.86667 0.80818 0.82634 0.79236 1.19675 1.20150 1.19479 1.22166 0.86786 1.03090 0.88705 0.94193 0.89661 0.94054 0.91530 0.92525 0.91393 0.89751 0.90079 0.88324 0.89333 0.91374 0.91239 0.89823 0.89913 0.82342 0.89334 0.93536 0.79695 0.91589 0.90611 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.38 -2.98 9.88 -35.23 -0.35 -3.33 16 3 C 0.08 0.54 2.72 -26.73 -0.07 0.47 16 4 H 0.06 0.31 7.79 -51.93 -0.40 -0.09 16 5 C -0.17 -1.01 9.53 37.16 0.35 -0.66 16 6 C -0.10 -0.81 4.21 -26.73 -0.11 -0.92 16 7 C -0.13 -1.03 4.79 -27.88 -0.13 -1.16 16 8 C 0.53 6.03 7.85 -10.99 -0.09 5.95 16 9 O -0.54 -8.33 16.24 5.55 0.09 -8.24 16 10 N -0.62 -6.44 3.33 -170.50 -0.57 -7.01 16 11 C 0.11 0.76 6.49 -3.07 -0.02 0.74 16 12 C -0.17 -1.34 6.54 -24.90 -0.16 -1.50 16 13 C 0.08 0.84 3.38 -65.55 -0.22 0.62 16 14 H 0.09 0.95 7.83 -51.93 -0.41 0.54 16 15 N -0.66 -9.45 6.04 -105.70 -0.64 -10.08 16 16 C 0.05 0.76 6.03 -4.97 -0.03 0.73 16 17 C 0.45 9.90 7.82 -10.99 -0.09 9.81 16 18 O -0.56 -14.91 15.78 5.55 0.09 -14.82 16 19 N -0.59 -13.75 5.09 -10.96 -0.06 -13.81 16 20 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 21 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.55 13.96 55.50 0.77 -24.77 16 24 Si 0.88 19.06 27.74 -169.99 -4.71 14.34 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 28 C 0.12 1.37 6.60 -2.51 -0.02 1.36 16 29 H 0.04 0.16 7.87 -51.93 -0.41 -0.24 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.16 8.09 -51.93 -0.42 -0.26 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.29 7.87 -51.93 -0.41 -0.12 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.10 0.71 7.82 -51.93 -0.41 0.31 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.69 7.76 -51.93 -0.40 0.29 16 43 H 0.36 5.27 7.89 -39.29 -0.31 4.96 16 44 H 0.09 1.24 8.09 -51.93 -0.42 0.82 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.37 7.52 5.76 -40.82 -0.24 7.28 16 47 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 49 H 0.08 1.11 8.04 -51.93 -0.42 0.70 16 LS Contribution 401.19 15.07 6.05 6.05 Total: -1.00 -35.04 401.19 -7.51 -42.55 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -8.44 Total: 10.14 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 0.26 Total: 8.99 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.49 Total: -55.67 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.17 Total: -26.39 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.34 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.04 -7.51 -42.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689790621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.584 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds