Wall clock time and date at job start Tue Mar 31 2020 04:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47025 * 2 1 4 4 C 1.52994 * 109.47388 * 120.00747 * 2 1 3 5 5 N 1.46493 * 109.47453 * 174.99622 * 4 2 1 6 6 C 1.46498 * 120.00209 * 269.99975 * 5 4 2 7 7 C 1.36944 * 119.99776 * 89.99819 * 5 4 2 8 8 H 1.08001 * 119.99966 * 23.61698 * 7 5 4 9 9 C 1.38812 * 119.99867 * 203.62241 * 7 5 4 10 10 N 1.31618 * 120.00144 * 11.30481 * 9 7 5 11 11 Si 1.86804 * 119.99887 * 191.31212 * 9 7 5 12 12 H 1.48508 * 109.46882 * 59.99606 * 11 9 7 13 13 H 1.48493 * 109.47081 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.46819 * 299.99947 * 11 9 7 15 15 N 1.46501 * 109.46673 * 240.00809 * 2 1 3 16 16 C 1.34775 * 120.00507 * 85.00109 * 15 2 1 17 17 O 1.21280 * 119.99651 * 359.97438 * 16 15 2 18 18 C 1.50696 * 120.00414 * 179.97438 * 16 15 2 19 19 C 1.53002 * 109.47405 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47190 * 179.97438 * 19 18 16 21 21 H 1.09009 * 110.41925 * 55.85932 * 20 19 18 22 22 C 1.54480 * 110.37364 * 178.16227 * 20 19 18 23 23 C 1.54514 * 104.06108 * 142.81078 * 22 20 19 24 24 C 1.54480 * 104.06189 * 0.02562 * 23 22 20 25 25 H 1.08997 * 110.46762 * 94.90004 * 24 23 22 26 26 C 1.50698 * 110.36750 * 217.18953 * 24 23 22 27 27 N 1.34783 * 119.99886 * 291.83310 * 26 24 23 28 28 O 1.21281 * 120.00412 * 111.83872 * 26 24 23 29 29 O 1.44423 * 104.80235 * 336.01542 * 24 23 22 30 30 H 1.08995 * 109.46781 * 299.99195 * 1 2 3 31 31 H 1.08998 * 109.47115 * 59.99460 * 1 2 3 32 32 H 1.08997 * 109.47306 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47106 * 295.00117 * 4 2 1 34 34 H 1.09005 * 109.46951 * 54.99627 * 4 2 1 35 35 H 1.09005 * 109.46750 * 94.53289 * 6 5 4 36 36 H 1.08995 * 109.47239 * 214.52813 * 6 5 4 37 37 H 1.08996 * 109.47378 * 334.53649 * 6 5 4 38 38 H 0.97000 * 119.99830 * 180.02562 * 10 9 7 39 39 H 0.97005 * 120.00027 * 264.99647 * 15 2 1 40 40 H 1.08997 * 109.47405 * 59.99783 * 18 16 15 41 41 H 1.09008 * 109.47140 * 299.99877 * 18 16 15 42 42 H 1.09002 * 109.46561 * 59.99983 * 19 18 16 43 43 H 1.08997 * 109.46687 * 299.99797 * 19 18 16 44 44 H 1.09002 * 110.50539 * 24.16962 * 22 20 19 45 45 H 1.08997 * 110.62869 * 261.52038 * 22 20 19 46 46 H 1.09001 * 110.50818 * 241.35998 * 23 22 20 47 47 H 1.08995 * 110.50359 * 118.64984 * 23 22 20 48 48 H 0.96998 * 120.00055 * 359.97438 * 27 26 24 49 49 H 0.96998 * 119.99855 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5001 -0.8266 1.1904 6 6 4.1258 -1.9921 0.5609 7 6 4.2799 0.1646 1.7239 8 1 3.8835 0.8068 2.4965 9 6 5.5800 0.3441 1.2716 10 7 5.9918 -0.2796 0.1882 11 14 6.7450 1.4706 2.2008 12 1 6.9137 0.9716 3.5893 13 1 8.0638 1.4901 1.5186 14 1 6.1836 2.8449 2.2335 15 7 2.0183 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8582 1.1586 -2.4116 18 6 2.6497 -0.7282 -3.5876 19 6 2.7005 0.2549 -4.7590 20 6 3.2116 -0.4660 -6.0080 21 1 2.5922 -1.3364 -6.2249 22 6 3.2276 0.4969 -7.2159 23 6 4.5001 0.0986 -7.9966 24 6 5.1019 -1.0582 -7.1683 25 1 4.7742 -2.0200 -7.5626 26 6 6.6067 -0.9769 -7.1699 27 7 7.2927 -1.2044 -8.3077 28 8 7.2006 -0.7069 -6.1475 29 8 4.5893 -0.8612 -5.8326 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7517 -0.1586 2.1369 34 1 1.6054 -1.7200 1.2949 35 1 4.3532 -1.7642 -0.4805 36 1 5.0471 -2.2390 1.0883 37 1 3.4426 -2.8401 0.6064 38 1 6.9004 -0.1544 -0.1276 39 1 2.2490 -1.6317 -1.1529 40 1 1.9776 -1.5504 -3.8328 41 1 3.6491 -1.1200 -3.3981 42 1 3.3725 1.0774 -4.5140 43 1 1.7010 0.6463 -4.9483 44 1 3.2944 1.5313 -6.8788 45 1 2.3405 0.3538 -7.8328 46 1 5.1960 0.9361 -8.0454 47 1 4.2418 -0.2437 -8.9987 48 1 6.8177 -1.4208 -9.1253 49 1 8.2612 -1.1525 -8.3086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754319868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:35 Heat of formation + Delta-G solvation = -108.539415 kcal Electronic energy + Delta-G solvation = -29054.004522 eV Core-core repulsion = 25016.447349 eV Total energy + Delta-G solvation = -4037.557173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.41944 -39.15960 -38.42295 -36.27507 -34.03253 -33.90683 -33.28738 -32.17669 -31.16793 -30.19721 -28.72046 -26.07857 -25.53272 -25.08143 -22.66957 -21.61127 -21.09239 -20.66203 -20.04768 -19.54101 -17.89466 -17.10290 -16.80902 -16.67486 -16.19435 -15.79954 -15.31438 -14.90332 -14.73704 -14.56421 -14.40200 -13.88421 -13.69102 -13.42565 -13.33808 -13.04246 -12.87543 -12.59302 -12.09454 -12.04421 -11.98850 -11.77184 -11.59985 -11.33518 -11.08033 -11.05691 -10.85656 -10.74505 -10.68212 -10.64215 -10.44266 -10.13478 -10.11093 -9.91710 -9.87845 -9.74602 -9.74320 -9.08335 -8.47578 -8.20157 -6.63048 -5.60745 -3.07638 2.44084 2.95796 3.40331 3.48431 3.53362 3.54956 3.87263 3.93651 4.27005 4.47255 4.58898 4.61130 4.75518 4.88982 5.02791 5.15921 5.21135 5.40422 5.45384 5.49688 5.56947 5.60451 5.61671 5.68877 5.79361 5.89936 5.90725 6.01381 6.10252 6.19471 6.31191 6.33888 6.44855 6.52536 6.55708 6.63757 6.71665 6.74375 7.00432 7.08303 7.34315 7.42846 7.78044 7.90857 8.08695 8.30903 8.50899 9.01632 9.34312 9.96584 10.44956 11.44258 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.003531 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.089713 B = 7928.004148 C = 9767.438663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.084 0.916 4 C 0.143 3.857 5 N -0.596 5.596 6 C 0.162 3.838 7 C -0.261 4.261 8 H 0.066 0.934 9 C 0.008 3.992 10 N -0.901 5.901 11 Si 0.902 3.098 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.284 1.284 15 N -0.700 5.700 16 C 0.518 3.482 17 O -0.558 6.558 18 C -0.139 4.139 19 C -0.093 4.093 20 C 0.072 3.928 21 H 0.072 0.928 22 C -0.149 4.149 23 C -0.143 4.143 24 C 0.055 3.945 25 H 0.093 0.907 26 C 0.517 3.483 27 N -0.856 5.856 28 O -0.508 6.508 29 O -0.332 6.332 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.040 0.960 35 H 0.033 0.967 36 H 0.042 0.958 37 H -0.007 1.007 38 H 0.253 0.747 39 H 0.394 0.606 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.399 0.601 49 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.319 -5.714 -20.585 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.102 0.898 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.017 3.983 7 C -0.391 4.391 8 H 0.084 0.916 9 C -0.191 4.191 10 N -0.545 5.545 11 Si 0.732 3.268 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.210 1.210 15 N -0.349 5.349 16 C 0.305 3.695 17 O -0.438 6.438 18 C -0.179 4.179 19 C -0.131 4.131 20 C 0.015 3.985 21 H 0.090 0.910 22 C -0.187 4.187 23 C -0.181 4.181 24 C -0.007 4.007 25 H 0.111 0.889 26 C 0.300 3.700 27 N -0.423 5.423 28 O -0.381 6.381 29 O -0.250 6.250 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.012 0.988 38 H 0.064 0.936 39 H 0.228 0.772 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.102 0.898 48 H 0.227 0.773 49 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -7.002 -4.722 -19.662 21.399 hybrid contribution 1.019 0.086 -0.289 1.062 sum -5.984 -4.636 -19.950 21.338 Atomic orbital electron populations 1.22145 0.97144 1.00887 1.01501 1.21826 0.91435 0.99184 0.86694 0.89831 1.21181 0.85900 0.97059 0.94370 1.43856 0.98989 1.20861 1.68169 1.20845 0.94456 0.84991 0.97993 1.19092 0.94636 1.10881 1.14465 0.91616 1.25023 0.98871 0.98965 0.96256 1.70003 1.17394 1.45322 1.21754 0.86384 0.80499 0.80824 0.79086 1.21183 1.21658 1.20986 1.45793 1.66106 1.13635 1.09334 1.20430 0.77052 0.87207 0.84830 1.90621 1.51423 1.16123 1.85593 1.21602 1.03879 0.99051 0.93356 1.21357 1.02079 0.98174 0.91470 1.23173 0.83635 0.96194 0.95529 0.90981 1.22998 0.97521 1.01555 0.96640 1.22902 0.97956 0.98149 0.99135 1.22797 0.91592 0.99760 0.86504 0.88926 1.20317 0.89508 0.76581 0.83593 1.43748 1.11205 1.75524 1.11831 1.90866 1.70391 1.44904 1.31911 1.89398 1.24553 1.88889 1.22168 0.92280 0.93094 0.93333 0.92516 0.94182 0.94909 0.93943 0.98818 0.93630 0.77196 0.89924 0.87889 0.90026 0.89985 0.89857 0.90071 0.90200 0.89766 0.77284 0.76435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.48 37.16 0.35 -2.14 16 2 C 0.12 2.30 2.88 -67.93 -0.20 2.10 16 3 H 0.08 2.01 7.58 -51.93 -0.39 1.62 16 4 C 0.14 2.91 5.33 -4.05 -0.02 2.89 16 5 N -0.60 -14.99 2.78 -181.13 -0.50 -15.49 16 6 C 0.16 3.94 7.61 59.85 0.46 4.39 16 7 C -0.26 -7.39 9.66 -15.06 -0.15 -7.54 16 8 H 0.07 1.83 7.85 -52.49 -0.41 1.42 16 9 C 0.01 0.23 5.13 -17.43 -0.09 0.14 16 10 N -0.90 -27.38 10.66 55.49 0.59 -26.79 16 11 Si 0.90 23.12 29.57 -169.99 -5.03 18.09 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 14 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 15 N -0.70 -13.41 4.41 -53.81 -0.24 -13.65 16 16 C 0.52 10.26 7.79 -10.99 -0.09 10.18 16 17 O -0.56 -12.88 15.64 5.56 0.09 -12.79 16 18 C -0.14 -2.19 5.62 -27.88 -0.16 -2.35 16 19 C -0.09 -1.34 4.14 -26.73 -0.11 -1.45 16 20 C 0.07 0.83 3.27 -25.96 -0.08 0.75 16 21 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 22 C -0.15 -1.32 6.63 -25.16 -0.17 -1.48 16 23 C -0.14 -1.10 6.62 -25.16 -0.17 -1.27 16 24 C 0.06 0.57 3.71 -27.11 -0.10 0.47 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 26 C 0.52 6.36 7.34 -10.98 -0.08 6.28 16 27 N -0.86 -5.81 8.87 31.22 0.28 -5.53 16 28 O -0.51 -9.58 17.39 -13.63 -0.24 -9.81 16 29 O -0.33 -4.96 10.26 -54.42 -0.56 -5.52 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 34 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 35 H 0.03 0.85 6.90 -51.93 -0.36 0.50 16 36 H 0.04 1.13 7.30 -51.93 -0.38 0.75 16 37 H -0.01 -0.14 7.84 -51.93 -0.41 -0.55 16 38 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.39 6.98 7.17 -40.82 -0.29 6.69 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.10 1.85 7.91 -51.92 -0.41 1.44 16 42 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 43 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 44 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 47 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.40 1.17 8.83 -40.82 -0.36 0.81 16 49 H 0.40 2.49 8.93 -40.82 -0.36 2.13 16 LS Contribution 397.71 15.07 5.99 5.99 Total: -1.00 -38.94 397.71 -8.59 -47.53 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -8.38 Total: 7.00 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: -0.60 Total: 10.97 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.13 Total: -61.46 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.71 Total: -28.12 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.03 Total: 18.09 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.94 -8.59 -47.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.011 kcal (2) G-P(sol) polarization free energy of solvation -38.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds