Wall clock time and date at job start Tue Mar 31 2020 04:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47025 * 2 1 4 4 C 1.52994 * 109.47388 * 120.00747 * 2 1 3 5 5 N 1.46493 * 109.47453 * 174.99622 * 4 2 1 6 6 C 1.46498 * 120.00209 * 269.99975 * 5 4 2 7 7 C 1.36944 * 119.99776 * 89.99819 * 5 4 2 8 8 H 1.08001 * 119.99966 * 23.61698 * 7 5 4 9 9 C 1.38812 * 119.99867 * 203.62241 * 7 5 4 10 10 N 1.31618 * 120.00144 * 11.30481 * 9 7 5 11 11 Si 1.86804 * 119.99887 * 191.31212 * 9 7 5 12 12 H 1.48508 * 109.46882 * 59.99606 * 11 9 7 13 13 H 1.48493 * 109.47081 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.46819 * 299.99947 * 11 9 7 15 15 N 1.46501 * 109.46673 * 240.00809 * 2 1 3 16 16 C 1.34775 * 120.00507 * 85.00109 * 15 2 1 17 17 O 1.21280 * 119.99651 * 359.97438 * 16 15 2 18 18 C 1.50696 * 120.00414 * 179.97438 * 16 15 2 19 19 C 1.53002 * 109.47405 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47190 * 179.97438 * 19 18 16 21 21 H 1.09009 * 110.41925 * 55.85932 * 20 19 18 22 22 C 1.54480 * 110.37364 * 178.16227 * 20 19 18 23 23 C 1.54514 * 104.06108 * 142.81078 * 22 20 19 24 24 C 1.54480 * 104.06189 * 0.02562 * 23 22 20 25 25 H 1.08997 * 110.46762 * 94.90004 * 24 23 22 26 26 C 1.50698 * 110.36750 * 217.18953 * 24 23 22 27 27 N 1.34783 * 119.99886 * 291.83310 * 26 24 23 28 28 O 1.21281 * 120.00412 * 111.83872 * 26 24 23 29 29 O 1.44423 * 104.80235 * 336.01542 * 24 23 22 30 30 H 1.08995 * 109.46781 * 299.99195 * 1 2 3 31 31 H 1.08998 * 109.47115 * 59.99460 * 1 2 3 32 32 H 1.08997 * 109.47306 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47106 * 295.00117 * 4 2 1 34 34 H 1.09005 * 109.46951 * 54.99627 * 4 2 1 35 35 H 1.09005 * 109.46750 * 94.53289 * 6 5 4 36 36 H 1.08995 * 109.47239 * 214.52813 * 6 5 4 37 37 H 1.08996 * 109.47378 * 334.53649 * 6 5 4 38 38 H 0.97000 * 119.99830 * 180.02562 * 10 9 7 39 39 H 0.97005 * 120.00027 * 264.99647 * 15 2 1 40 40 H 1.08997 * 109.47405 * 59.99783 * 18 16 15 41 41 H 1.09008 * 109.47140 * 299.99877 * 18 16 15 42 42 H 1.09002 * 109.46561 * 59.99983 * 19 18 16 43 43 H 1.08997 * 109.46687 * 299.99797 * 19 18 16 44 44 H 1.09002 * 110.50539 * 24.16962 * 22 20 19 45 45 H 1.08997 * 110.62869 * 261.52038 * 22 20 19 46 46 H 1.09001 * 110.50818 * 241.35998 * 23 22 20 47 47 H 1.08995 * 110.50359 * 118.64984 * 23 22 20 48 48 H 0.96998 * 120.00055 * 359.97438 * 27 26 24 49 49 H 0.96998 * 119.99855 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5001 -0.8266 1.1904 6 6 4.1258 -1.9921 0.5609 7 6 4.2799 0.1646 1.7239 8 1 3.8835 0.8068 2.4965 9 6 5.5800 0.3441 1.2716 10 7 5.9918 -0.2796 0.1882 11 14 6.7450 1.4706 2.2008 12 1 6.9137 0.9716 3.5893 13 1 8.0638 1.4901 1.5186 14 1 6.1836 2.8449 2.2335 15 7 2.0183 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8582 1.1586 -2.4116 18 6 2.6497 -0.7282 -3.5876 19 6 2.7005 0.2549 -4.7590 20 6 3.2116 -0.4660 -6.0080 21 1 2.5922 -1.3364 -6.2249 22 6 3.2276 0.4969 -7.2159 23 6 4.5001 0.0986 -7.9966 24 6 5.1019 -1.0582 -7.1683 25 1 4.7742 -2.0200 -7.5626 26 6 6.6067 -0.9769 -7.1699 27 7 7.2927 -1.2044 -8.3077 28 8 7.2006 -0.7069 -6.1475 29 8 4.5893 -0.8612 -5.8326 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7517 -0.1586 2.1369 34 1 1.6054 -1.7200 1.2949 35 1 4.3532 -1.7642 -0.4805 36 1 5.0471 -2.2390 1.0883 37 1 3.4426 -2.8401 0.6064 38 1 6.9004 -0.1544 -0.1276 39 1 2.2490 -1.6317 -1.1529 40 1 1.9776 -1.5504 -3.8328 41 1 3.6491 -1.1200 -3.3981 42 1 3.3725 1.0774 -4.5140 43 1 1.7010 0.6463 -4.9483 44 1 3.2944 1.5313 -6.8788 45 1 2.3405 0.3538 -7.8328 46 1 5.1960 0.9361 -8.0454 47 1 4.2418 -0.2437 -8.9987 48 1 6.8177 -1.4208 -9.1253 49 1 8.2612 -1.1525 -8.3086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754319868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:34 Heat of formation + Delta-G solvation = -139.693804 kcal Electronic energy + Delta-G solvation = -29055.355477 eV Core-core repulsion = 25016.447349 eV Total energy + Delta-G solvation = -4038.908129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.32459 -40.68980 -39.43519 -38.05983 -35.75224 -34.92988 -34.47791 -33.13497 -32.91715 -31.82586 -29.73168 -27.97908 -27.40298 -26.17779 -23.83610 -23.14606 -22.10032 -21.63845 -21.49244 -21.10394 -18.77972 -18.68310 -18.06273 -17.87881 -17.39027 -17.05282 -16.80202 -16.60860 -16.02161 -15.76350 -15.52493 -15.33676 -15.24306 -14.81590 -14.64390 -14.46258 -14.24283 -14.04800 -13.73559 -13.33748 -13.08514 -13.02190 -12.81349 -12.71006 -12.66344 -12.59218 -12.57250 -12.30453 -12.07180 -11.99165 -11.90165 -11.84505 -11.69812 -11.64419 -11.07678 -10.74412 -10.71392 -10.64519 -10.61646 -9.84989 -8.72093 -7.82787 -5.29786 1.40576 1.42550 1.49281 1.53113 1.82385 2.20795 2.45976 2.52068 3.08720 3.31442 3.52489 3.71196 3.74407 3.89073 3.94455 3.98420 4.13192 4.20560 4.22225 4.33324 4.42186 4.48765 4.55175 4.61254 4.67047 4.77175 4.78939 4.83633 4.90474 4.92451 5.01418 5.03319 5.10101 5.14080 5.23266 5.28831 5.35218 5.40705 5.63103 5.76717 5.78984 5.82356 5.93050 6.32704 6.45336 6.76309 7.16802 7.32702 7.46520 7.90082 8.30193 9.18646 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.003531 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.089713 B = 7928.004148 C = 9767.438663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.120 3.880 3 H 0.030 0.970 4 C 0.142 3.858 5 N -0.611 5.611 6 C 0.175 3.825 7 C -0.263 4.263 8 H 0.068 0.932 9 C -0.050 4.050 10 N -0.930 5.930 11 Si 0.959 3.041 12 H -0.271 1.271 13 H -0.300 1.300 14 H -0.282 1.282 15 N -0.697 5.697 16 C 0.506 3.494 17 O -0.599 6.599 18 C -0.128 4.128 19 C -0.090 4.090 20 C 0.072 3.928 21 H 0.108 0.892 22 C -0.147 4.147 23 C -0.134 4.134 24 C 0.049 3.951 25 H 0.134 0.866 26 C 0.510 3.490 27 N -0.826 5.826 28 O -0.591 6.591 29 O -0.385 6.385 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.008 0.992 36 H 0.009 0.991 37 H 0.039 0.961 38 H 0.242 0.758 39 H 0.403 0.597 40 H 0.128 0.872 41 H 0.077 0.923 42 H 0.033 0.967 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.118 0.882 46 H 0.064 0.936 47 H 0.133 0.867 48 H 0.422 0.578 49 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.786 -7.538 -22.435 25.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.013 3.987 3 H 0.048 0.952 4 C 0.015 3.985 5 N -0.334 5.334 6 C 0.030 3.970 7 C -0.393 4.393 8 H 0.086 0.914 9 C -0.246 4.246 10 N -0.576 5.576 11 Si 0.788 3.212 12 H -0.197 1.197 13 H -0.226 1.226 14 H -0.208 1.208 15 N -0.346 5.346 16 C 0.295 3.705 17 O -0.481 6.481 18 C -0.167 4.167 19 C -0.128 4.128 20 C 0.015 3.985 21 H 0.125 0.875 22 C -0.185 4.185 23 C -0.171 4.171 24 C -0.012 4.012 25 H 0.151 0.849 26 C 0.295 3.705 27 N -0.393 5.393 28 O -0.470 6.470 29 O -0.304 6.304 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.238 0.762 40 H 0.146 0.854 41 H 0.095 0.905 42 H 0.052 0.948 43 H 0.113 0.887 44 H 0.080 0.920 45 H 0.136 0.864 46 H 0.083 0.917 47 H 0.152 0.848 48 H 0.255 0.745 49 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -9.511 -6.584 -21.562 24.469 hybrid contribution 1.732 0.634 0.282 1.865 sum -7.780 -5.950 -21.280 23.426 Atomic orbital electron populations 1.21991 0.93427 1.02885 1.01837 1.21647 0.94212 0.96167 0.86705 0.95152 1.21383 0.83139 0.99293 0.94657 1.44079 1.00961 1.20407 1.67960 1.20609 0.94251 0.86198 0.95902 1.19439 0.95054 1.10818 1.14019 0.91447 1.25730 1.00616 1.00922 0.97302 1.70197 1.16818 1.47208 1.23370 0.85469 0.78134 0.79196 0.78442 1.19666 1.22640 1.20815 1.45829 1.65713 1.13988 1.09068 1.21197 0.76349 0.86948 0.86050 1.90592 1.53263 1.17921 1.86336 1.21588 1.02988 1.00189 0.91984 1.21326 1.01812 0.96847 0.92781 1.23308 0.82830 0.97745 0.94625 0.87477 1.23024 0.99708 0.99658 0.96110 1.22944 0.96672 0.96677 1.00845 1.23167 0.89967 1.02702 0.85340 0.84914 1.20918 0.90766 0.75325 0.83497 1.43519 1.11545 1.72902 1.11307 1.90832 1.71995 1.49179 1.35042 1.89364 1.26335 1.89374 1.25330 0.90675 0.94089 0.90372 0.91907 0.90429 0.97331 0.97220 0.94285 0.94901 0.76177 0.85428 0.90493 0.94781 0.88665 0.92011 0.86355 0.91731 0.84842 0.74528 0.75902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 9.48 71.98 0.68 -3.51 16 2 C 0.12 4.71 2.88 44.99 0.13 4.84 16 3 H 0.03 1.51 7.58 -2.39 -0.02 1.49 16 4 C 0.14 5.54 5.33 86.38 0.46 6.00 16 5 N -0.61 -30.67 2.78 -726.96 -2.02 -32.69 16 6 C 0.18 8.54 7.61 127.77 0.97 9.51 16 7 C -0.26 -15.08 9.66 84.03 0.81 -14.27 16 8 H 0.07 3.77 7.85 -2.91 -0.02 3.75 16 9 C -0.05 -3.00 5.13 84.86 0.44 -2.57 16 10 N -0.93 -59.03 10.66 21.65 0.23 -58.80 16 11 Si 0.96 48.92 29.57 68.60 2.03 50.94 16 12 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.30 -15.63 7.11 99.48 0.71 -14.93 16 14 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16 15 N -0.70 -26.64 4.41 -442.54 -1.95 -28.59 16 16 C 0.51 20.60 7.79 87.66 0.68 21.28 16 17 O -0.60 -28.93 15.64 -3.03 -0.05 -28.98 16 18 C -0.13 -4.09 5.62 29.85 0.17 -3.92 16 19 C -0.09 -2.66 4.14 30.59 0.13 -2.53 16 20 C 0.07 1.56 3.27 31.10 0.10 1.66 16 21 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 22 C -0.15 -2.28 6.63 31.61 0.21 -2.07 16 23 C -0.13 -1.69 6.62 31.61 0.21 -1.48 16 24 C 0.05 0.94 3.71 30.35 0.11 1.05 16 25 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 26 C 0.51 12.60 7.34 87.66 0.64 13.24 16 27 N -0.83 -9.99 8.87 -173.53 -1.54 -11.53 16 28 O -0.59 -23.85 17.39 15.32 0.27 -23.58 16 29 O -0.38 -11.65 10.26 -130.63 -1.34 -12.99 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 2.38 8.03 -2.39 -0.02 2.36 16 34 H 0.08 2.48 7.86 -2.38 -0.02 2.46 16 35 H 0.01 0.45 6.90 -2.38 -0.02 0.44 16 36 H 0.01 0.50 7.30 -2.39 -0.02 0.48 16 37 H 0.04 1.52 7.84 -2.39 -0.02 1.50 16 38 H 0.24 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.40 13.85 7.17 -92.70 -0.66 13.18 16 40 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.08 2.92 7.91 -2.38 -0.02 2.90 16 42 H 0.03 1.30 8.10 -2.39 -0.02 1.28 16 43 H 0.09 2.50 8.10 -2.39 -0.02 2.48 16 44 H 0.06 1.22 7.87 -2.39 -0.02 1.20 16 45 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 1.02 7.87 -2.39 -0.02 1.00 16 47 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.42 1.14 8.83 -92.71 -0.82 0.32 16 49 H 0.41 4.67 8.93 -92.71 -0.83 3.85 16 Total: -1.00 -94.21 397.71 0.03 -94.18 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -1.34 Total: 24.81 kcal Atomic # 6 Polarization: 21.48 SS G_CDS: 5.75 Total: 27.23 kcal Atomic # 7 Polarization: -126.33 SS G_CDS: -5.28 Total: -131.61 kcal Atomic # 8 Polarization: -64.44 SS G_CDS: -1.12 Total: -65.56 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.03 Total: 50.94 kcal Total: -94.21 0.03 -94.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.512 kcal (2) G-P(sol) polarization free energy of solvation -94.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds