Wall clock time and date at job start Tue Mar 31 2020 04:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47256 * 2 1 4 4 C 1.53002 * 109.46940 * 240.00371 * 2 1 3 5 5 N 1.46503 * 109.47363 * 185.00381 * 4 2 1 6 6 C 1.46499 * 119.99643 * 270.00370 * 5 4 2 7 7 C 1.36934 * 120.00399 * 89.99170 * 5 4 2 8 8 H 1.08005 * 119.99406 * 22.03561 * 7 5 4 9 9 C 1.38809 * 120.00429 * 202.03199 * 7 5 4 10 10 N 1.31625 * 119.99892 * 11.44428 * 9 7 5 11 11 Si 1.86800 * 120.00341 * 191.44878 * 9 7 5 12 12 H 1.48499 * 109.46846 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47389 * 119.99940 * 11 9 7 14 14 H 1.48503 * 109.46918 * 239.99948 * 11 9 7 15 15 N 1.46503 * 109.47143 * 120.00472 * 2 1 3 16 16 C 1.34770 * 119.99716 * 274.99791 * 15 2 1 17 17 O 1.21282 * 120.00153 * 359.97438 * 16 15 2 18 18 C 1.50704 * 120.00074 * 180.02562 * 16 15 2 19 19 C 1.53000 * 109.47271 * 180.02562 * 18 16 15 20 20 C 1.53007 * 109.46929 * 179.97438 * 19 18 16 21 21 H 1.08998 * 109.98686 * 54.62783 * 20 19 18 22 22 C 1.54097 * 109.87626 * 175.71182 * 20 19 18 23 23 C 1.54814 * 104.18460 * 121.45103 * 22 20 19 24 24 C 1.54990 * 102.09134 * 20.88173 * 23 22 20 25 25 H 1.09004 * 110.61911 * 81.47804 * 24 23 22 26 26 C 1.50700 * 110.61827 * 204.46890 * 24 23 22 27 27 N 1.34780 * 120.00254 * 290.52672 * 26 24 23 28 28 O 1.21283 * 119.99568 * 110.52424 * 26 24 23 29 29 O 1.43736 * 109.87483 * 293.54399 * 20 19 18 30 30 H 1.09002 * 109.47602 * 59.99498 * 1 2 3 31 31 H 1.09006 * 109.47597 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47259 * 299.99807 * 1 2 3 33 33 H 1.09006 * 109.46927 * 304.99627 * 4 2 1 34 34 H 1.09001 * 109.47540 * 65.00054 * 4 2 1 35 35 H 1.09000 * 109.47608 * 94.03992 * 6 5 4 36 36 H 1.08997 * 109.46897 * 214.03713 * 6 5 4 37 37 H 1.09005 * 109.47157 * 334.03650 * 6 5 4 38 38 H 0.96997 * 119.99773 * 180.02562 * 10 9 7 39 39 H 0.96999 * 119.99900 * 94.99428 * 15 2 1 40 40 H 1.08996 * 109.47053 * 59.99501 * 18 16 15 41 41 H 1.09002 * 109.47036 * 299.99895 * 18 16 15 42 42 H 1.09001 * 109.47376 * 60.00122 * 19 18 16 43 43 H 1.09002 * 109.46884 * 299.99840 * 19 18 16 44 44 H 1.08994 * 110.48828 * 240.12831 * 22 20 19 45 45 H 1.09002 * 110.48689 * 2.78132 * 22 20 19 46 46 H 1.09004 * 110.90420 * 139.07519 * 23 22 20 47 47 H 1.08999 * 110.91011 * 262.64545 * 23 22 20 48 48 H 0.96998 * 119.99575 * 0.02562 * 27 26 24 49 49 H 0.97002 * 119.99604 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8265 -1.1907 6 6 4.3342 0.2340 -1.7613 7 6 4.0849 -1.9159 -0.6024 8 1 3.5319 -2.8385 -0.5043 9 6 5.3884 -1.8346 -0.1323 10 7 5.9842 -0.6643 -0.0435 11 14 6.2971 -3.3861 0.3743 12 1 5.4127 -4.5632 0.1807 13 1 7.5165 -3.5401 -0.4592 14 1 6.6843 -3.2883 1.8046 15 7 2.0183 -0.6907 1.1961 16 6 2.1470 -0.0184 2.3571 17 8 1.8590 1.1584 2.4115 18 6 2.6499 -0.7287 3.5874 19 6 2.7007 0.2541 4.7588 20 6 3.2107 -0.4672 6.0081 21 1 4.1683 -0.9437 5.7983 22 6 3.3677 0.5375 7.1659 23 6 2.4479 -0.0201 8.2794 24 6 2.3057 -1.5077 7.8684 25 1 3.1702 -2.0822 8.2010 26 6 1.0327 -2.0924 8.4239 27 7 0.9069 -2.2951 9.7504 28 8 0.1214 -2.3806 7.6773 29 8 2.2543 -1.4554 6.4264 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6053 -1.7198 -1.2952 34 1 1.7516 -0.1582 -2.1371 35 1 4.5995 0.9472 -0.9809 36 1 5.2418 -0.2024 -2.1783 37 1 3.7821 0.7463 -2.5493 38 1 6.8952 -0.6076 0.2847 39 1 2.2489 -1.6319 1.1525 40 1 3.6492 -1.1206 3.3978 41 1 1.9777 -1.5511 3.8325 42 1 1.7012 0.6456 4.9483 43 1 3.3727 1.0767 4.5140 44 1 4.4027 0.5689 7.5060 45 1 3.0359 1.5291 6.8581 46 1 2.9221 0.0697 9.2568 47 1 1.4797 0.4806 8.2712 48 1 1.6356 -2.0642 10.3475 49 1 0.0873 -2.6711 10.1080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754319872.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:39 Heat of formation + Delta-G solvation = -111.329547 kcal Electronic energy + Delta-G solvation = -29054.968922 eV Core-core repulsion = 25017.290760 eV Total energy + Delta-G solvation = -4037.678162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.46747 -39.08673 -38.48550 -36.26671 -34.11321 -33.91983 -33.22407 -32.20473 -31.27096 -30.09453 -28.67317 -26.12435 -25.56328 -25.02795 -22.77639 -21.65820 -20.98839 -20.80492 -20.00299 -19.41841 -17.96062 -17.25285 -16.87992 -16.58201 -16.02681 -15.79284 -15.36409 -14.91077 -14.80178 -14.71872 -14.47350 -13.74460 -13.70247 -13.36066 -13.28096 -13.14782 -12.76649 -12.53030 -12.21379 -12.09917 -11.96378 -11.76154 -11.62960 -11.33287 -11.25020 -11.10063 -10.84297 -10.83475 -10.65789 -10.55868 -10.33366 -10.18137 -10.15876 -10.03428 -9.99619 -9.79806 -9.72538 -8.98498 -8.55404 -8.09897 -6.75076 -5.71781 -3.17354 2.31609 2.86752 3.34370 3.43292 3.43880 3.51551 3.82656 4.05948 4.22128 4.43553 4.48015 4.59857 4.77645 4.87522 4.99634 5.22201 5.34500 5.38691 5.41332 5.53259 5.55679 5.63240 5.67890 5.75512 5.82615 5.92585 6.03906 6.08410 6.17020 6.24740 6.31241 6.34765 6.43018 6.51727 6.53862 6.63210 6.72838 6.79476 6.98041 6.99470 7.41477 7.46535 7.73556 7.82351 7.96109 8.38531 8.48668 9.13819 9.23092 9.87120 10.37269 11.32442 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.012630 B = 0.003230 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.421607 B = 8666.600017 C = 9645.732506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 H 0.074 0.926 4 C 0.142 3.858 5 N -0.599 5.599 6 C 0.165 3.835 7 C -0.253 4.253 8 H 0.067 0.933 9 C 0.005 3.995 10 N -0.900 5.900 11 Si 0.896 3.104 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.291 1.291 15 N -0.689 5.689 16 C 0.519 3.481 17 O -0.569 6.569 18 C -0.139 4.139 19 C -0.095 4.095 20 C 0.072 3.928 21 H 0.076 0.924 22 C -0.150 4.150 23 C -0.142 4.142 24 C 0.056 3.944 25 H 0.095 0.905 26 C 0.522 3.478 27 N -0.855 5.855 28 O -0.517 6.517 29 O -0.340 6.340 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.027 0.973 36 H 0.045 0.955 37 H -0.005 1.005 38 H 0.250 0.750 39 H 0.403 0.597 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.401 0.599 49 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.895 -0.187 18.321 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 H 0.092 0.908 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.382 4.382 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.545 5.545 11 Si 0.727 3.273 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.218 1.218 15 N -0.338 5.338 16 C 0.305 3.695 17 O -0.449 6.449 18 C -0.179 4.179 19 C -0.133 4.133 20 C 0.015 3.985 21 H 0.094 0.906 22 C -0.188 4.188 23 C -0.180 4.180 24 C -0.006 4.006 25 H 0.113 0.887 26 C 0.305 3.695 27 N -0.421 5.421 28 O -0.391 6.391 29 O -0.258 6.258 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.013 0.987 38 H 0.061 0.939 39 H 0.239 0.761 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.100 0.900 48 H 0.229 0.771 49 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -6.523 0.421 17.533 18.712 hybrid contribution 1.054 -1.190 0.982 1.868 sum -5.468 -0.768 18.515 19.321 Atomic orbital electron populations 1.22155 0.97092 1.01186 1.01391 1.21750 0.91665 0.98286 0.87229 0.90751 1.21189 0.85908 0.97880 0.93688 1.43905 0.98947 1.22635 1.66633 1.20786 0.92959 0.90462 0.93783 1.19141 0.96927 0.89518 1.32655 0.91515 1.24985 0.98628 0.96144 0.99587 1.70099 1.13035 1.21537 1.49853 0.86311 0.80060 0.83069 0.77895 1.20309 1.21733 1.21763 1.45720 1.65168 1.14310 1.08626 1.20424 0.77086 0.87079 0.84889 1.90593 1.52250 1.16330 1.85766 1.21581 1.03604 0.99645 0.93050 1.21473 1.03034 0.97380 0.91401 1.22977 0.92420 0.88350 0.94762 0.90592 1.23013 1.00381 1.00708 0.94665 1.23088 1.01590 0.93641 0.99679 1.22944 0.95618 0.97127 0.84905 0.88725 1.20294 0.88925 0.77788 0.82467 1.43744 1.21986 1.68649 1.07720 1.90803 1.41092 1.49236 1.57953 1.89064 1.61067 1.59121 1.16549 0.92468 0.93073 0.92991 0.93393 0.93121 0.95472 0.93671 0.98656 0.93910 0.76127 0.88815 0.88982 0.90685 0.89837 0.90115 0.89501 0.89576 0.89951 0.77117 0.76443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.48 37.15 0.35 -2.26 16 2 C 0.12 2.34 2.88 -67.93 -0.20 2.15 16 3 H 0.07 1.69 7.58 -51.93 -0.39 1.29 16 4 C 0.14 2.83 5.36 -4.04 -0.02 2.81 16 5 N -0.60 -14.54 2.82 -181.11 -0.51 -15.05 16 6 C 0.16 4.09 9.01 59.85 0.54 4.63 16 7 C -0.25 -6.50 8.02 -15.06 -0.12 -6.62 16 8 H 0.07 1.67 7.84 -52.48 -0.41 1.26 16 9 C 0.01 0.14 5.13 -17.43 -0.09 0.05 16 10 N -0.90 -25.48 10.57 55.49 0.59 -24.89 16 11 Si 0.90 21.02 29.57 -169.99 -5.03 16.00 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 N -0.69 -13.98 4.49 -53.81 -0.24 -14.23 16 16 C 0.52 10.74 7.79 -10.99 -0.09 10.66 16 17 O -0.57 -13.26 15.64 5.56 0.09 -13.17 16 18 C -0.14 -2.41 5.61 -27.88 -0.16 -2.56 16 19 C -0.10 -1.45 3.99 -26.73 -0.11 -1.56 16 20 C 0.07 0.90 3.41 -26.15 -0.09 0.81 16 21 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 22 C -0.15 -1.36 6.64 -25.20 -0.17 -1.53 16 23 C -0.14 -1.09 6.57 -24.72 -0.16 -1.25 16 24 C 0.06 0.55 3.76 -26.83 -0.10 0.45 16 25 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 26 C 0.52 5.72 7.47 -10.98 -0.08 5.64 16 27 N -0.85 -4.87 8.87 31.22 0.28 -4.59 16 28 O -0.52 -8.56 17.41 -13.49 -0.23 -8.79 16 29 O -0.34 -4.82 10.09 -54.27 -0.55 -5.37 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.91 8.03 -51.93 -0.42 0.50 16 34 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 35 H 0.03 0.74 7.44 -51.93 -0.39 0.35 16 36 H 0.04 1.19 7.16 -51.93 -0.37 0.82 16 37 H -0.01 -0.11 7.85 -51.93 -0.41 -0.52 16 38 H 0.25 6.94 8.31 -40.82 -0.34 6.61 16 39 H 0.40 8.07 7.40 -40.82 -0.30 7.77 16 40 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 41 H 0.09 1.53 7.88 -51.93 -0.41 1.12 16 42 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 43 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.80 7.70 -51.93 -0.40 0.40 16 46 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.71 8.05 -51.93 -0.42 0.29 16 48 H 0.40 0.88 8.83 -40.82 -0.36 0.52 16 49 H 0.40 1.95 8.93 -40.82 -0.36 1.59 16 LS Contribution 398.12 15.07 6.00 6.00 Total: -1.00 -35.57 398.12 -8.51 -44.08 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -8.41 Total: 8.61 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: -0.49 Total: 11.41 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.11 Total: -58.76 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.70 Total: -27.34 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.57 -8.51 -44.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319872.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.254 kcal (2) G-P(sol) polarization free energy of solvation -35.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds