Wall clock time and date at job start Tue Mar 31 2020 04:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47256 * 2 1 4 4 C 1.53002 * 109.46940 * 240.00371 * 2 1 3 5 5 N 1.46503 * 109.47363 * 185.00381 * 4 2 1 6 6 C 1.46499 * 119.99643 * 270.00370 * 5 4 2 7 7 C 1.36934 * 120.00399 * 89.99170 * 5 4 2 8 8 H 1.08005 * 119.99406 * 22.03561 * 7 5 4 9 9 C 1.38809 * 120.00429 * 202.03199 * 7 5 4 10 10 N 1.31625 * 119.99892 * 11.44428 * 9 7 5 11 11 Si 1.86800 * 120.00341 * 191.44878 * 9 7 5 12 12 H 1.48499 * 109.46846 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47389 * 119.99940 * 11 9 7 14 14 H 1.48503 * 109.46918 * 239.99948 * 11 9 7 15 15 N 1.46503 * 109.47143 * 120.00472 * 2 1 3 16 16 C 1.34770 * 119.99716 * 274.99791 * 15 2 1 17 17 O 1.21282 * 120.00153 * 359.97438 * 16 15 2 18 18 C 1.50704 * 120.00074 * 180.02562 * 16 15 2 19 19 C 1.53000 * 109.47271 * 180.02562 * 18 16 15 20 20 C 1.53007 * 109.46929 * 179.97438 * 19 18 16 21 21 H 1.08998 * 109.98686 * 54.62783 * 20 19 18 22 22 C 1.54097 * 109.87626 * 175.71182 * 20 19 18 23 23 C 1.54814 * 104.18460 * 121.45103 * 22 20 19 24 24 C 1.54990 * 102.09134 * 20.88173 * 23 22 20 25 25 H 1.09004 * 110.61911 * 81.47804 * 24 23 22 26 26 C 1.50700 * 110.61827 * 204.46890 * 24 23 22 27 27 N 1.34780 * 120.00254 * 290.52672 * 26 24 23 28 28 O 1.21283 * 119.99568 * 110.52424 * 26 24 23 29 29 O 1.43736 * 109.87483 * 293.54399 * 20 19 18 30 30 H 1.09002 * 109.47602 * 59.99498 * 1 2 3 31 31 H 1.09006 * 109.47597 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47259 * 299.99807 * 1 2 3 33 33 H 1.09006 * 109.46927 * 304.99627 * 4 2 1 34 34 H 1.09001 * 109.47540 * 65.00054 * 4 2 1 35 35 H 1.09000 * 109.47608 * 94.03992 * 6 5 4 36 36 H 1.08997 * 109.46897 * 214.03713 * 6 5 4 37 37 H 1.09005 * 109.47157 * 334.03650 * 6 5 4 38 38 H 0.96997 * 119.99773 * 180.02562 * 10 9 7 39 39 H 0.96999 * 119.99900 * 94.99428 * 15 2 1 40 40 H 1.08996 * 109.47053 * 59.99501 * 18 16 15 41 41 H 1.09002 * 109.47036 * 299.99895 * 18 16 15 42 42 H 1.09001 * 109.47376 * 60.00122 * 19 18 16 43 43 H 1.09002 * 109.46884 * 299.99840 * 19 18 16 44 44 H 1.08994 * 110.48828 * 240.12831 * 22 20 19 45 45 H 1.09002 * 110.48689 * 2.78132 * 22 20 19 46 46 H 1.09004 * 110.90420 * 139.07519 * 23 22 20 47 47 H 1.08999 * 110.91011 * 262.64545 * 23 22 20 48 48 H 0.96998 * 119.99575 * 0.02562 * 27 26 24 49 49 H 0.97002 * 119.99604 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8265 -1.1907 6 6 4.3342 0.2340 -1.7613 7 6 4.0849 -1.9159 -0.6024 8 1 3.5319 -2.8385 -0.5043 9 6 5.3884 -1.8346 -0.1323 10 7 5.9842 -0.6643 -0.0435 11 14 6.2971 -3.3861 0.3743 12 1 5.4127 -4.5632 0.1807 13 1 7.5165 -3.5401 -0.4592 14 1 6.6843 -3.2883 1.8046 15 7 2.0183 -0.6907 1.1961 16 6 2.1470 -0.0184 2.3571 17 8 1.8590 1.1584 2.4115 18 6 2.6499 -0.7287 3.5874 19 6 2.7007 0.2541 4.7588 20 6 3.2107 -0.4672 6.0081 21 1 4.1683 -0.9437 5.7983 22 6 3.3677 0.5375 7.1659 23 6 2.4479 -0.0201 8.2794 24 6 2.3057 -1.5077 7.8684 25 1 3.1702 -2.0822 8.2010 26 6 1.0327 -2.0924 8.4239 27 7 0.9069 -2.2951 9.7504 28 8 0.1214 -2.3806 7.6773 29 8 2.2543 -1.4554 6.4264 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6053 -1.7198 -1.2952 34 1 1.7516 -0.1582 -2.1371 35 1 4.5995 0.9472 -0.9809 36 1 5.2418 -0.2024 -2.1783 37 1 3.7821 0.7463 -2.5493 38 1 6.8952 -0.6076 0.2847 39 1 2.2489 -1.6319 1.1525 40 1 3.6492 -1.1206 3.3978 41 1 1.9777 -1.5511 3.8325 42 1 1.7012 0.6456 4.9483 43 1 3.3727 1.0767 4.5140 44 1 4.4027 0.5689 7.5060 45 1 3.0359 1.5291 6.8581 46 1 2.9221 0.0697 9.2568 47 1 1.4797 0.4806 8.2712 48 1 1.6356 -2.0642 10.3475 49 1 0.0873 -2.6711 10.1080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754319872.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:38 Heat of formation + Delta-G solvation = -138.223671 kcal Electronic energy + Delta-G solvation = -29056.135139 eV Core-core repulsion = 25017.290760 eV Total energy + Delta-G solvation = -4038.844379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.34017 -40.64800 -39.46457 -38.03901 -35.70887 -34.90046 -34.47742 -33.17962 -32.94261 -31.69332 -29.73460 -28.03193 -27.36524 -26.11761 -23.88041 -23.26814 -22.00815 -21.58157 -21.55622 -21.07790 -18.76693 -18.62983 -18.06890 -17.83910 -17.32513 -17.07399 -16.83201 -16.61385 -15.93385 -15.72471 -15.58516 -15.51667 -15.02767 -14.89077 -14.47762 -14.46459 -14.22283 -13.99421 -13.81071 -13.28033 -13.09565 -13.03876 -12.88831 -12.83570 -12.70426 -12.66124 -12.52224 -12.15206 -12.08251 -11.95715 -11.92693 -11.88587 -11.66151 -11.60939 -11.07222 -10.73721 -10.67023 -10.62103 -10.58228 -9.77186 -8.74940 -7.75213 -5.22598 1.47902 1.51366 1.51762 1.59702 1.84771 2.16311 2.50965 2.56303 3.05324 3.39790 3.51438 3.68853 3.74903 3.89637 3.91456 3.98161 4.10090 4.16577 4.17740 4.30428 4.41571 4.47871 4.55290 4.61770 4.70652 4.75170 4.76099 4.85321 4.86385 4.91556 4.99902 5.01480 5.07285 5.11845 5.18922 5.26520 5.34739 5.40341 5.67776 5.74984 5.77705 5.83806 5.93189 6.37357 6.43764 6.82500 7.19803 7.30861 7.48618 7.91442 8.37794 9.28640 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.012630 B = 0.003230 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.421607 B = 8666.600017 C = 9645.732506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.121 3.879 3 H 0.039 0.961 4 C 0.142 3.858 5 N -0.612 5.612 6 C 0.180 3.820 7 C -0.247 4.247 8 H 0.078 0.922 9 C -0.046 4.046 10 N -0.935 5.935 11 Si 0.956 3.044 12 H -0.264 1.264 13 H -0.300 1.300 14 H -0.293 1.293 15 N -0.690 5.690 16 C 0.508 3.492 17 O -0.600 6.600 18 C -0.129 4.129 19 C -0.090 4.090 20 C 0.073 3.927 21 H 0.081 0.919 22 C -0.147 4.147 23 C -0.131 4.131 24 C 0.048 3.952 25 H 0.127 0.873 26 C 0.518 3.482 27 N -0.826 5.826 28 O -0.586 6.586 29 O -0.377 6.377 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.066 0.934 34 H 0.073 0.927 35 H -0.008 1.008 36 H 0.021 0.979 37 H 0.026 0.974 38 H 0.243 0.757 39 H 0.405 0.595 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.107 0.893 45 H 0.080 0.920 46 H 0.131 0.869 47 H 0.068 0.932 48 H 0.422 0.578 49 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.127 -1.379 19.977 20.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 H 0.057 0.943 4 C 0.015 3.985 5 N -0.335 5.335 6 C 0.034 3.966 7 C -0.377 4.377 8 H 0.096 0.904 9 C -0.241 4.241 10 N -0.582 5.582 11 Si 0.785 3.215 12 H -0.188 1.188 13 H -0.227 1.227 14 H -0.220 1.220 15 N -0.339 5.339 16 C 0.296 3.704 17 O -0.483 6.483 18 C -0.169 4.169 19 C -0.128 4.128 20 C 0.016 3.984 21 H 0.099 0.901 22 C -0.184 4.184 23 C -0.169 4.169 24 C -0.013 4.013 25 H 0.145 0.855 26 C 0.303 3.697 27 N -0.392 5.392 28 O -0.465 6.465 29 O -0.296 6.296 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.010 0.990 36 H 0.039 0.961 37 H 0.044 0.956 38 H 0.052 0.948 39 H 0.241 0.759 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.126 0.874 45 H 0.099 0.901 46 H 0.149 0.851 47 H 0.087 0.913 48 H 0.254 0.746 49 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -6.767 -0.794 19.243 20.414 hybrid contribution 1.067 -0.809 0.458 1.415 sum -5.701 -1.603 19.701 20.572 Atomic orbital electron populations 1.22024 0.94126 1.02488 1.01870 1.21681 0.93879 0.96161 0.86965 0.94271 1.21371 0.83393 0.99265 0.94471 1.44135 1.00777 1.22089 1.66459 1.20493 0.92776 0.89941 0.93347 1.19466 0.96909 0.90246 1.31123 0.90449 1.25645 0.99649 0.98369 1.00467 1.70282 1.12847 1.23452 1.51621 0.85370 0.78599 0.80579 0.76949 1.18780 1.22735 1.22031 1.45821 1.64876 1.14335 1.08829 1.21038 0.76599 0.86896 0.85874 1.90565 1.53684 1.17730 1.86347 1.21554 1.03053 0.99979 0.92325 1.21407 1.02040 0.96970 0.92344 1.22943 0.91895 0.88983 0.94600 0.90101 1.23023 1.02355 0.99306 0.93736 1.23108 1.01056 0.91466 1.01250 1.23299 0.96055 0.99038 0.82911 0.85534 1.20632 0.88526 0.77104 0.83473 1.43515 1.22893 1.66541 1.06261 1.90774 1.43279 1.52593 1.59893 1.89021 1.61639 1.59527 1.19447 0.90004 0.91279 0.94514 0.91576 0.90887 0.98975 0.96053 0.95580 0.94756 0.75930 0.89244 0.88301 0.92288 0.90798 0.87432 0.90120 0.85104 0.91275 0.74628 0.75662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.58 9.48 71.98 0.68 -3.90 16 2 C 0.12 4.72 2.88 44.99 0.13 4.85 16 3 H 0.04 1.81 7.58 -2.39 -0.02 1.79 16 4 C 0.14 5.42 5.36 86.38 0.46 5.88 16 5 N -0.61 -29.39 2.82 -726.92 -2.05 -31.44 16 6 C 0.18 9.00 9.01 127.77 1.15 10.15 16 7 C -0.25 -12.55 8.02 84.03 0.67 -11.88 16 8 H 0.08 3.73 7.84 -2.91 -0.02 3.70 16 9 C -0.05 -2.46 5.13 84.86 0.44 -2.03 16 10 N -0.93 -54.21 10.57 21.65 0.23 -53.98 16 11 Si 0.96 43.28 29.57 68.60 2.03 45.31 16 12 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 13 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 14 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 15 N -0.69 -28.21 4.49 -442.54 -1.99 -30.20 16 16 C 0.51 21.71 7.79 87.66 0.68 22.39 16 17 O -0.60 -29.13 15.64 -3.04 -0.05 -29.18 16 18 C -0.13 -4.62 5.61 29.85 0.17 -4.45 16 19 C -0.09 -2.84 3.99 30.60 0.12 -2.71 16 20 C 0.07 1.79 3.41 30.97 0.11 1.89 16 21 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 22 C -0.15 -2.37 6.64 31.58 0.21 -2.16 16 23 C -0.13 -1.64 6.57 31.89 0.21 -1.43 16 24 C 0.05 0.85 3.76 30.53 0.11 0.96 16 25 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 26 C 0.52 10.78 7.47 87.66 0.65 11.43 16 27 N -0.83 -7.42 8.87 -173.53 -1.54 -8.96 16 28 O -0.59 -19.80 17.41 15.17 0.26 -19.54 16 29 O -0.38 -10.59 10.09 -130.77 -1.32 -11.91 16 30 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 31 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 2.32 8.03 -2.38 -0.02 2.30 16 34 H 0.07 2.48 7.86 -2.39 -0.02 2.46 16 35 H -0.01 -0.46 7.44 -2.39 -0.02 -0.48 16 36 H 0.02 1.13 7.16 -2.39 -0.02 1.12 16 37 H 0.03 1.11 7.85 -2.38 -0.02 1.09 16 38 H 0.24 13.88 8.31 -92.71 -0.77 13.11 16 39 H 0.41 16.11 7.40 -92.71 -0.69 15.42 16 40 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 41 H 0.10 3.38 7.88 -2.39 -0.02 3.36 16 42 H 0.06 2.02 8.10 -2.39 -0.02 2.00 16 43 H 0.07 2.43 8.10 -2.39 -0.02 2.41 16 44 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.08 1.42 7.70 -2.39 -0.02 1.40 16 46 H 0.13 0.47 8.14 -2.38 -0.02 0.46 16 47 H 0.07 1.07 8.05 -2.39 -0.02 1.05 16 48 H 0.42 0.31 8.83 -92.71 -0.82 -0.51 16 49 H 0.41 3.16 8.93 -92.71 -0.83 2.33 16 Total: -1.00 -81.28 398.12 0.02 -81.26 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: -1.37 Total: 29.64 kcal Atomic # 6 Polarization: 23.20 SS G_CDS: 5.80 Total: 29.01 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -5.35 Total: -124.58 kcal Atomic # 8 Polarization: -59.53 SS G_CDS: -1.10 Total: -60.64 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -81.28 0.02 -81.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319872.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.966 kcal (2) G-P(sol) polarization free energy of solvation -81.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds