Wall clock time and date at job start Tue Mar 31 2020 05:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36034 * 117.00167 * 2 1 4 4 C 1.38374 * 119.99159 * 359.97438 * 3 2 1 5 5 C 1.38549 * 120.40711 * 180.02562 * 4 3 2 6 6 C 1.37879 * 120.38033 * 359.97438 * 5 4 3 7 7 Cl 1.73602 * 120.00703 * 179.97438 * 6 5 4 8 8 C 1.39981 * 119.97480 * 359.97438 * 6 5 4 9 9 C 1.47228 * 120.19780 * 179.97438 * 8 6 5 10 10 O 1.21533 * 119.99929 * 90.00481 * 9 8 6 11 11 O 1.34777 * 120.00101 * 269.72619 * 9 8 6 12 12 C 1.45196 * 117.00167 * 180.27173 * 11 9 8 13 13 C 1.50695 * 109.47491 * 180.02562 * 12 11 9 14 14 O 1.21295 * 119.99849 * 0.02562 * 13 12 11 15 15 N 1.34771 * 120.00260 * 180.02562 * 13 12 11 16 16 C 1.37096 * 120.00308 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00438 * 179.97438 * 16 15 13 19 19 N 1.31412 * 120.00140 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00363 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47301 * 90.00191 * 20 18 16 22 22 H 1.48505 * 109.47343 * 210.00640 * 20 18 16 23 23 H 1.48508 * 109.47143 * 330.00504 * 20 18 16 24 24 C 1.39318 * 119.99465 * 180.25340 * 3 2 1 25 25 N 1.39085 * 120.19089 * 359.97438 * 24 3 2 26 26 H 1.09004 * 109.46569 * 60.00955 * 1 2 3 27 27 H 1.08998 * 109.46936 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47319 * 300.00264 * 1 2 3 29 29 H 1.08004 * 119.79434 * 0.02562 * 4 3 2 30 30 H 1.07995 * 119.80987 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.47461 * 300.00595 * 12 11 9 32 32 H 1.09010 * 109.46796 * 60.00385 * 12 11 9 33 33 H 0.97001 * 120.00433 * 0.02562 * 15 13 12 34 34 H 0.96995 * 120.00385 * 179.97438 * 19 18 16 35 35 H 0.96999 * 120.00285 * 180.23675 * 25 24 3 36 36 H 0.97006 * 119.99722 * 0.22596 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2121 0.0000 4 6 1.2929 2.3725 -0.0005 5 6 1.9129 3.6115 -0.0011 6 6 3.2887 3.7027 -0.0006 7 17 4.0555 5.2602 -0.0019 8 6 4.0668 2.5391 0.0011 9 6 5.5362 2.6308 0.0011 10 8 6.1426 2.6699 1.0536 11 8 6.2092 2.6656 -1.1661 12 6 7.6567 2.7503 -1.0901 13 6 8.2321 2.7792 -2.4826 14 8 7.4947 2.7335 -3.4445 15 7 9.5660 2.8559 -2.6591 16 6 10.0895 2.8817 -3.9259 17 1 9.4329 2.8410 -4.7825 18 6 11.4647 2.9613 -4.1080 19 7 12.2637 3.0113 -3.0659 20 14 12.1779 2.9971 -5.8341 21 1 12.2855 4.4043 -6.2961 22 1 13.5260 2.3744 -5.8257 23 1 11.2891 2.2411 -6.7528 24 6 3.4379 1.2848 -0.0053 25 7 4.1992 0.1208 -0.0101 26 1 -0.3632 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.2145 2.3120 -0.0005 30 1 1.3152 4.5109 -0.0019 31 1 7.9403 3.6602 -0.5612 32 1 8.0438 1.8832 -0.5546 33 1 10.1558 2.8921 -1.8899 34 1 13.2237 3.0665 -3.1929 35 1 5.1677 0.1746 -0.0104 36 1 3.7615 -0.7449 -0.0131 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731246310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:39 Heat of formation + Delta-G solvation = -132.580023 kcal Electronic energy + Delta-G solvation = -24853.888039 eV Core-core repulsion = 20750.779606 eV Total energy + Delta-G solvation = -4103.108433 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.94399 -39.95756 -38.24739 -37.68868 -36.56834 -36.01022 -34.83072 -33.98525 -31.38787 -30.96175 -29.25843 -28.36031 -27.54956 -24.91121 -23.91673 -22.55803 -20.99166 -19.57434 -18.71651 -18.06424 -17.97826 -17.44561 -17.14980 -16.37257 -16.10242 -15.99575 -15.59101 -15.48330 -15.01150 -14.53704 -14.29777 -14.02258 -13.73705 -13.64690 -13.21906 -12.78551 -12.60529 -12.39609 -12.22740 -12.00865 -11.67639 -11.61182 -11.42675 -11.13197 -11.12476 -10.64815 -10.55071 -10.43528 -10.41928 -10.28191 -9.59239 -8.87466 -8.50071 -8.06946 -7.67955 -6.48766 -3.90699 0.67195 1.10229 1.92064 2.05923 2.54934 2.98841 3.14292 3.24235 3.28690 3.31866 3.50484 3.74948 4.11676 4.37388 4.58715 4.64026 4.79791 4.82936 4.96509 5.03729 5.11721 5.15930 5.18166 5.28168 5.50503 5.68586 5.79535 5.89740 6.03463 6.07052 6.50869 6.72581 7.15845 7.41565 7.49093 7.75018 7.96044 8.49920 9.08466 9.40576 9.90704 10.68532 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.002768 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.381970 B =10114.764949 C =10725.564514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.053 3.947 4 C -0.131 4.131 5 C -0.133 4.133 6 C 0.019 3.981 7 Cl -0.050 7.050 8 C -0.153 4.153 9 C 0.516 3.484 10 O -0.492 6.492 11 O -0.312 6.312 12 C 0.056 3.944 13 C 0.439 3.561 14 O -0.573 6.573 15 N -0.553 5.553 16 C -0.301 4.301 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.898 5.898 20 Si 0.934 3.066 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.268 1.268 24 C 0.257 3.743 25 N -0.852 5.852 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.395 0.605 34 H 0.274 0.726 35 H 0.403 0.597 36 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.242 -3.657 9.913 24.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C 0.005 3.995 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.009 4.009 7 Cl -0.021 7.021 8 C -0.161 4.161 9 C 0.357 3.643 10 O -0.380 6.380 11 O -0.226 6.226 12 C -0.021 4.021 13 C 0.224 3.776 14 O -0.457 6.457 15 N -0.190 5.190 16 C -0.431 4.431 17 H 0.124 0.876 18 C -0.178 4.178 19 N -0.538 5.538 20 Si 0.760 3.240 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 C 0.148 3.852 25 N -0.390 5.390 26 H 0.076 0.924 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.228 0.772 34 H 0.084 0.916 35 H 0.233 0.767 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -22.156 -3.725 9.559 24.416 hybrid contribution 1.002 0.087 -0.201 1.025 sum -21.154 -3.638 9.358 23.416 Atomic orbital electron populations 1.23065 0.77896 1.04103 1.01461 1.85980 1.21630 1.25764 1.89742 1.18148 0.89583 0.85499 1.06275 1.21041 1.00198 0.90853 1.03016 1.20468 0.91455 0.98240 1.05227 1.20420 0.92475 0.85579 1.02392 1.98409 1.81474 1.25638 1.96577 1.17992 0.89827 0.91493 1.16751 1.20749 0.87978 0.73008 0.82527 1.90877 1.69628 1.44713 1.32769 1.86766 1.21509 1.82195 1.32124 1.22840 0.76601 1.03572 0.99109 1.19276 0.83641 0.86006 0.88694 1.90576 1.58742 1.55023 1.41313 1.41695 1.04082 1.63742 1.09518 1.19724 0.90865 1.47923 0.84538 0.87618 1.25305 0.95891 0.96928 0.99643 1.69612 1.04721 1.49595 1.29896 0.85804 0.78106 0.78596 0.81479 1.20256 1.20824 1.19276 1.16589 0.87665 0.86105 0.94841 1.42227 1.08911 1.05562 1.82338 0.92440 0.88120 0.92539 0.84002 0.84012 0.89312 0.89453 0.77166 0.91641 0.76720 0.75816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.86 9.73 -19.85 -0.19 -3.05 16 3 C 0.05 0.57 6.70 -39.13 -0.26 0.31 16 4 C -0.13 -1.18 9.03 -39.42 -0.36 -1.53 16 5 C -0.13 -1.36 9.80 -39.60 -0.39 -1.75 16 6 C 0.02 0.26 6.35 -39.06 -0.25 0.01 16 7 Cl -0.05 -0.71 28.04 -51.86 -1.45 -2.16 16 8 C -0.15 -2.30 5.77 -104.81 -0.60 -2.90 16 9 C 0.52 8.99 5.18 34.38 0.18 9.17 16 10 O -0.49 -9.11 16.90 -19.29 -0.33 -9.44 16 11 O -0.31 -6.15 9.77 -47.38 -0.46 -6.61 16 12 C 0.06 1.10 5.95 36.00 0.21 1.32 16 13 C 0.44 10.74 7.86 -10.99 -0.09 10.65 16 14 O -0.57 -16.17 16.08 -14.11 -0.23 -16.39 16 15 N -0.55 -14.08 5.29 -10.97 -0.06 -14.14 16 16 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 17 H 0.11 3.07 7.16 -52.48 -0.38 2.69 16 18 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 19 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 20 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 C 0.26 3.33 6.78 -83.39 -0.57 2.77 16 25 N -0.85 -9.73 8.99 32.65 0.29 -9.43 16 26 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 27 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 29 H 0.14 0.79 6.26 -52.48 -0.33 0.46 16 30 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.09 1.50 8.14 -51.92 -0.42 1.07 16 33 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 34 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.40 4.82 7.68 -40.82 -0.31 4.51 16 36 H 0.41 3.76 8.18 -40.82 -0.33 3.43 16 LS Contribution 340.40 15.07 5.13 5.13 Total: -1.00 -33.93 340.40 -6.26 -40.19 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -3.29 Total: 12.35 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -1.37 Total: 11.23 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.96 Total: -47.04 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -1.21 Total: -35.50 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.45 Total: -2.16 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.93 -6.26 -40.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731246310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.394 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds