Wall clock time and date at job start Tue Mar 31 2020 05:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34775 * 120.00104 * 2 1 4 4 O 1.21284 * 119.99633 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99969 * 0.02562 * 3 2 1 6 6 F 1.39901 * 110.64633 * 54.29529 * 5 3 2 7 7 C 1.54595 * 110.72421 * 291.14201 * 5 3 2 8 8 C 1.53993 * 105.13877 * 219.68610 * 7 5 3 9 9 N 1.47904 * 107.05802 * 358.77575 * 8 7 5 10 10 C 1.46900 * 110.99735 * 145.84440 * 9 8 7 11 11 C 1.52996 * 109.47614 * 54.77798 * 10 9 8 12 12 C 1.53006 * 109.47098 * 174.77611 * 10 9 8 13 13 C 1.53007 * 109.47258 * 294.77357 * 10 9 8 14 14 C 1.48725 * 105.94713 * 25.20282 * 9 8 7 15 15 C 1.46502 * 119.99750 * 180.02562 * 2 1 3 16 16 C 1.53493 * 114.20371 * 299.99859 * 15 2 1 17 17 N 1.47061 * 87.98684 * 87.51942 * 16 15 2 18 18 C 1.36945 * 136.05712 * 207.08188 * 17 16 15 19 19 H 1.07991 * 119.99816 * 0.11516 * 18 17 16 20 20 C 1.38818 * 119.99807 * 180.11734 * 18 17 16 21 21 N 1.31616 * 119.99913 * 8.34349 * 20 18 17 22 22 Si 1.86795 * 119.99712 * 188.34352 * 20 18 17 23 23 H 1.48500 * 109.47265 * 94.95841 * 22 20 18 24 24 H 1.48500 * 109.47322 * 214.96156 * 22 20 18 25 25 H 1.48501 * 109.47227 * 334.95988 * 22 20 18 26 26 C 1.47062 * 87.88699 * 27.34188 * 17 16 15 27 27 H 1.09006 * 109.46562 * 269.99484 * 1 2 3 28 28 H 1.09002 * 109.47033 * 29.99158 * 1 2 3 29 29 H 1.08992 * 109.47561 * 149.99449 * 1 2 3 30 30 H 1.08996 * 110.30642 * 338.60245 * 7 5 3 31 31 H 1.08996 * 110.31121 * 100.67092 * 7 5 3 32 32 H 1.09004 * 109.91605 * 118.12293 * 8 7 5 33 33 H 1.08998 * 109.91943 * 239.42111 * 8 7 5 34 34 H 1.08999 * 109.46908 * 59.99478 * 11 10 9 35 35 H 1.08999 * 109.47719 * 180.02562 * 11 10 9 36 36 H 1.09003 * 109.46796 * 299.99802 * 11 10 9 37 37 H 1.09009 * 109.46784 * 59.99708 * 12 10 9 38 38 H 1.08996 * 109.47101 * 179.97438 * 12 10 9 39 39 H 1.08999 * 109.46968 * 300.00243 * 12 10 9 40 40 H 1.08999 * 109.46457 * 52.44341 * 13 10 9 41 41 H 1.09002 * 109.46875 * 172.44078 * 13 10 9 42 42 H 1.08998 * 109.47382 * 292.44491 * 13 10 9 43 43 H 1.08995 * 110.84104 * 202.57664 * 14 9 8 44 44 H 1.09005 * 110.58715 * 79.37825 * 14 9 8 45 45 H 1.08998 * 113.41083 * 166.79170 * 15 2 1 46 46 H 1.09002 * 113.47172 * 332.73893 * 16 15 2 47 47 H 1.09010 * 113.46418 * 202.30002 * 16 15 2 48 48 H 0.97003 * 119.99909 * 179.97438 * 21 20 18 49 49 H 1.08999 * 113.47101 * 87.43905 * 26 17 16 50 50 H 1.09006 * 113.47192 * 217.88032 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 0.0006 6 9 0.4776 2.5172 1.0640 7 6 0.6598 2.6856 -1.3477 8 6 0.8292 4.1833 -1.6630 9 7 1.5809 4.7812 -0.5383 10 6 2.4645 5.8566 -1.0082 11 6 1.6446 6.8861 -1.7885 12 6 3.1250 6.5356 0.1934 13 6 3.5442 5.2683 -1.9187 14 6 2.3652 3.6710 0.0651 15 6 2.1975 -1.2688 -0.0006 16 6 1.9059 -2.1643 1.2115 17 7 0.7742 -2.7259 0.4589 18 6 -0.4282 -3.3025 0.7706 19 1 -0.7179 -3.4222 1.8040 20 6 -1.2746 -3.7333 -0.2420 21 7 -0.8572 -3.7400 -1.4902 22 14 -3.0057 -4.3034 0.1672 23 1 -3.9529 -3.1728 -0.0050 24 1 -3.3892 -5.4134 -0.7417 25 1 -3.0512 -4.7774 1.5738 26 6 1.5047 -2.4017 -0.7756 27 1 -0.3633 -0.0001 1.0278 28 1 -0.3633 0.8901 -0.5137 29 1 -0.3634 -0.8898 -0.5139 30 1 1.1232 2.0802 -2.1266 31 1 -0.3966 2.4347 -1.2526 32 1 1.3886 4.3065 -2.5905 33 1 -0.1484 4.6575 -1.7501 34 1 0.8755 7.3051 -1.1398 35 1 2.3003 7.6838 -2.1375 36 1 1.1741 6.4024 -2.6445 37 1 3.7092 5.8021 0.7494 38 1 3.7810 7.3332 -0.1553 39 1 2.3558 6.9546 0.8421 40 1 3.0744 4.6713 -2.7004 41 1 4.1162 6.0771 -2.3734 42 1 4.2110 4.6374 -1.3310 43 1 2.6275 3.8983 1.0983 44 1 3.2595 3.4689 -0.5244 45 1 3.2574 -1.1569 -0.2291 46 1 1.6039 -1.6085 2.0992 47 1 2.6942 -2.8891 1.4152 48 1 -1.4485 -4.0413 -2.1977 49 1 2.1870 -3.1890 -1.0958 50 1 0.8608 -2.0480 -1.5810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043887631.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:54 Heat of formation + Delta-G solvation = 4.811036 kcal Electronic energy + Delta-G solvation = -30387.568847 eV Core-core repulsion = 26367.299708 eV Total energy + Delta-G solvation = -4020.269139 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -47.73490 -40.26742 -39.43377 -37.78077 -34.95216 -34.11303 -32.14434 -29.74315 -29.57937 -27.89744 -27.61282 -27.16887 -26.21439 -24.64763 -24.01891 -22.57812 -21.83245 -19.92458 -19.14073 -18.36356 -17.35258 -16.77305 -16.73170 -16.04402 -15.50228 -15.14466 -14.96976 -14.88937 -14.47510 -14.32978 -14.16423 -13.95218 -13.70267 -13.59615 -12.99047 -12.91321 -12.68813 -12.57774 -12.46738 -12.35002 -12.13773 -11.93057 -11.86444 -11.68141 -11.42745 -11.37386 -11.28709 -11.15370 -11.03719 -10.91674 -10.82903 -10.75955 -10.67512 -10.14859 -9.93836 -9.52652 -9.48175 -8.84544 -8.54799 -8.07372 -6.98863 -5.86637 -3.17307 2.61101 3.09255 3.34142 3.40556 3.41840 3.70949 4.08715 4.18096 4.38756 4.42676 4.59480 4.63707 4.73818 4.90116 4.96064 5.09734 5.18951 5.29372 5.34515 5.38725 5.39234 5.40934 5.50414 5.53757 5.57296 5.60179 5.65602 5.68988 5.76588 5.78748 5.89828 5.92794 6.01647 6.07544 6.11548 6.12997 6.25923 6.44150 6.50773 6.63271 6.65658 6.84630 6.88570 7.06939 7.18370 7.42412 7.78980 7.87879 8.29502 8.95230 9.61196 10.54277 11.30999 Molecular weight = 327.21amu Principal moments of inertia in cm(-1) A = 0.022231 B = 0.003207 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.204118 B = 8729.399792 C = 9232.410109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.559 5.559 3 C 0.502 3.498 4 O -0.541 6.541 5 C 0.107 3.893 6 F -0.179 7.179 7 C -0.150 4.150 8 C 0.034 3.966 9 N -0.503 5.503 10 C 0.093 3.907 11 C -0.140 4.140 12 C -0.137 4.137 13 C -0.187 4.187 14 C 0.029 3.971 15 C 0.078 3.922 16 C 0.106 3.894 17 N -0.606 5.606 18 C -0.216 4.216 19 H 0.081 0.919 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.909 3.091 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.149 3.851 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.043 0.957 47 H 0.044 0.956 48 H 0.254 0.746 49 H 0.040 0.960 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.838 19.555 -1.825 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.288 5.288 3 C 0.286 3.714 4 O -0.419 6.419 5 C 0.085 3.915 6 F -0.160 7.160 7 C -0.188 4.188 8 C -0.093 4.093 9 N -0.227 5.227 10 C 0.003 3.997 11 C -0.197 4.197 12 C -0.194 4.194 13 C -0.245 4.245 14 C -0.099 4.099 15 C -0.026 4.026 16 C -0.022 4.022 17 N -0.332 5.332 18 C -0.343 4.343 19 H 0.099 0.901 20 C -0.202 4.202 21 N -0.566 5.566 22 Si 0.740 3.260 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.023 3.977 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.129 0.871 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.118 0.882 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.058 0.942 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.734 19.611 -1.478 20.485 hybrid contribution -0.546 -1.048 -0.295 1.218 sum 5.188 18.563 -1.773 19.355 Atomic orbital electron populations 1.22170 0.77780 1.04054 1.02907 1.47337 1.07953 1.04481 1.69050 1.20473 0.87951 0.85133 0.77808 1.90667 1.13241 1.87036 1.50984 1.21785 0.88887 0.94384 0.86454 1.92925 1.68092 1.97270 1.57665 1.23162 1.02887 0.97440 0.95345 1.22935 0.99736 0.92902 0.93741 1.65084 1.23335 1.08209 1.26096 1.21229 0.91726 0.92081 0.94663 1.21896 1.00060 0.98014 0.99765 1.21824 1.00320 1.00162 0.97134 1.22557 0.99763 1.01831 1.00370 1.23707 0.95515 0.88028 1.02627 1.22800 0.95664 0.83331 1.00830 1.22819 0.90967 0.93441 0.94935 1.45841 1.14134 1.71181 1.02056 1.18943 0.89862 1.32881 0.92632 0.90084 1.24754 0.98679 1.01408 0.95403 1.69847 1.35245 1.52615 0.98900 0.86137 0.84475 0.78029 0.77383 1.21432 1.21785 1.20623 1.22469 0.92392 0.90624 0.92221 0.92459 0.92491 0.87112 0.89246 0.88181 0.92434 0.89538 0.91681 0.92160 0.92485 0.92487 0.92257 0.91697 0.92131 0.91822 0.91641 0.88525 0.89590 0.88178 0.93845 0.93879 0.93579 0.94190 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 8.52 59.85 0.51 1.85 16 2 N -0.56 -10.28 3.12 -173.55 -0.54 -10.82 16 3 C 0.50 8.69 6.71 -10.99 -0.07 8.62 16 4 O -0.54 -10.34 15.22 5.55 0.08 -10.25 16 5 C 0.11 1.55 1.05 -89.91 -0.09 1.46 16 6 F -0.18 -2.86 15.61 2.25 0.04 -2.83 16 7 C -0.15 -1.81 5.15 -25.38 -0.13 -1.94 16 8 C 0.03 0.35 5.10 -2.75 -0.01 0.34 16 9 N -0.50 -5.55 5.08 -214.67 -1.09 -6.64 16 10 C 0.09 0.84 0.69 -131.60 -0.09 0.75 16 11 C -0.14 -1.07 8.26 37.16 0.31 -0.76 16 12 C -0.14 -1.16 8.49 37.16 0.32 -0.84 16 13 C -0.19 -1.65 7.58 37.16 0.28 -1.37 16 14 C 0.03 0.37 4.41 -1.79 -0.01 0.37 16 15 C 0.08 1.53 4.68 -67.68 -0.32 1.21 16 16 C 0.11 2.18 8.31 -8.52 -0.07 2.11 16 17 N -0.61 -14.65 2.48 -184.63 -0.46 -15.11 16 18 C -0.22 -5.71 10.34 -15.05 -0.16 -5.87 16 19 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 20 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 21 N -0.92 -25.67 11.65 55.49 0.65 -25.02 16 22 Si 0.91 21.24 29.56 -169.99 -5.03 16.21 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 C 0.15 3.34 6.36 -8.38 -0.05 3.29 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.89 4.13 -51.93 -0.21 0.68 16 29 H 0.11 2.42 5.38 -51.93 -0.28 2.14 16 30 H 0.09 1.08 7.84 -51.93 -0.41 0.67 16 31 H 0.10 1.17 6.59 -51.93 -0.34 0.83 16 32 H 0.06 0.53 5.29 -51.93 -0.27 0.26 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.43 6.75 -51.93 -0.35 0.08 16 37 H 0.06 0.52 7.18 -51.92 -0.37 0.14 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.55 6.07 -51.93 -0.32 0.24 16 41 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 42 H 0.06 0.64 6.39 -51.93 -0.33 0.31 16 43 H 0.10 1.26 7.74 -51.93 -0.40 0.86 16 44 H 0.09 1.13 4.80 -51.93 -0.25 0.88 16 45 H 0.10 1.87 7.30 -51.93 -0.38 1.50 16 46 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 48 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.07 1.76 6.45 -51.93 -0.34 1.42 16 LS Contribution 374.66 15.07 5.65 5.65 Total: -1.00 -29.27 374.66 -8.42 -37.69 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.03 Total: 2.18 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 0.31 Total: 8.96 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -1.44 Total: -57.60 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.27 -8.42 -37.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043887631.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.499 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds