Wall clock time and date at job start Tue Mar 31 2020 05:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34775 * 120.00104 * 2 1 4 4 O 1.21284 * 119.99633 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99969 * 0.02562 * 3 2 1 6 6 F 1.39901 * 110.64633 * 54.29529 * 5 3 2 7 7 C 1.54595 * 110.72421 * 291.14201 * 5 3 2 8 8 C 1.53993 * 105.13877 * 219.68610 * 7 5 3 9 9 N 1.47904 * 107.05802 * 358.77575 * 8 7 5 10 10 C 1.46900 * 110.99735 * 145.84440 * 9 8 7 11 11 C 1.52996 * 109.47614 * 54.77798 * 10 9 8 12 12 C 1.53006 * 109.47098 * 174.77611 * 10 9 8 13 13 C 1.53007 * 109.47258 * 294.77357 * 10 9 8 14 14 C 1.48725 * 105.94713 * 25.20282 * 9 8 7 15 15 C 1.46502 * 119.99750 * 180.02562 * 2 1 3 16 16 C 1.53493 * 114.20371 * 299.99859 * 15 2 1 17 17 N 1.47061 * 87.98684 * 87.51942 * 16 15 2 18 18 C 1.36945 * 136.05712 * 207.08188 * 17 16 15 19 19 H 1.07991 * 119.99816 * 0.11516 * 18 17 16 20 20 C 1.38818 * 119.99807 * 180.11734 * 18 17 16 21 21 N 1.31616 * 119.99913 * 8.34349 * 20 18 17 22 22 Si 1.86795 * 119.99712 * 188.34352 * 20 18 17 23 23 H 1.48500 * 109.47265 * 94.95841 * 22 20 18 24 24 H 1.48500 * 109.47322 * 214.96156 * 22 20 18 25 25 H 1.48501 * 109.47227 * 334.95988 * 22 20 18 26 26 C 1.47062 * 87.88699 * 27.34188 * 17 16 15 27 27 H 1.09006 * 109.46562 * 269.99484 * 1 2 3 28 28 H 1.09002 * 109.47033 * 29.99158 * 1 2 3 29 29 H 1.08992 * 109.47561 * 149.99449 * 1 2 3 30 30 H 1.08996 * 110.30642 * 338.60245 * 7 5 3 31 31 H 1.08996 * 110.31121 * 100.67092 * 7 5 3 32 32 H 1.09004 * 109.91605 * 118.12293 * 8 7 5 33 33 H 1.08998 * 109.91943 * 239.42111 * 8 7 5 34 34 H 1.08999 * 109.46908 * 59.99478 * 11 10 9 35 35 H 1.08999 * 109.47719 * 180.02562 * 11 10 9 36 36 H 1.09003 * 109.46796 * 299.99802 * 11 10 9 37 37 H 1.09009 * 109.46784 * 59.99708 * 12 10 9 38 38 H 1.08996 * 109.47101 * 179.97438 * 12 10 9 39 39 H 1.08999 * 109.46968 * 300.00243 * 12 10 9 40 40 H 1.08999 * 109.46457 * 52.44341 * 13 10 9 41 41 H 1.09002 * 109.46875 * 172.44078 * 13 10 9 42 42 H 1.08998 * 109.47382 * 292.44491 * 13 10 9 43 43 H 1.08995 * 110.84104 * 202.57664 * 14 9 8 44 44 H 1.09005 * 110.58715 * 79.37825 * 14 9 8 45 45 H 1.08998 * 113.41083 * 166.79170 * 15 2 1 46 46 H 1.09002 * 113.47172 * 332.73893 * 16 15 2 47 47 H 1.09010 * 113.46418 * 202.30002 * 16 15 2 48 48 H 0.97003 * 119.99909 * 179.97438 * 21 20 18 49 49 H 1.08999 * 113.47101 * 87.43905 * 26 17 16 50 50 H 1.09006 * 113.47192 * 217.88032 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 0.0006 6 9 0.4776 2.5172 1.0640 7 6 0.6598 2.6856 -1.3477 8 6 0.8292 4.1833 -1.6630 9 7 1.5809 4.7812 -0.5383 10 6 2.4645 5.8566 -1.0082 11 6 1.6446 6.8861 -1.7885 12 6 3.1250 6.5356 0.1934 13 6 3.5442 5.2683 -1.9187 14 6 2.3652 3.6710 0.0651 15 6 2.1975 -1.2688 -0.0006 16 6 1.9059 -2.1643 1.2115 17 7 0.7742 -2.7259 0.4589 18 6 -0.4282 -3.3025 0.7706 19 1 -0.7179 -3.4222 1.8040 20 6 -1.2746 -3.7333 -0.2420 21 7 -0.8572 -3.7400 -1.4902 22 14 -3.0057 -4.3034 0.1672 23 1 -3.9529 -3.1728 -0.0050 24 1 -3.3892 -5.4134 -0.7417 25 1 -3.0512 -4.7774 1.5738 26 6 1.5047 -2.4017 -0.7756 27 1 -0.3633 -0.0001 1.0278 28 1 -0.3633 0.8901 -0.5137 29 1 -0.3634 -0.8898 -0.5139 30 1 1.1232 2.0802 -2.1266 31 1 -0.3966 2.4347 -1.2526 32 1 1.3886 4.3065 -2.5905 33 1 -0.1484 4.6575 -1.7501 34 1 0.8755 7.3051 -1.1398 35 1 2.3003 7.6838 -2.1375 36 1 1.1741 6.4024 -2.6445 37 1 3.7092 5.8021 0.7494 38 1 3.7810 7.3332 -0.1553 39 1 2.3558 6.9546 0.8421 40 1 3.0744 4.6713 -2.7004 41 1 4.1162 6.0771 -2.3734 42 1 4.2110 4.6374 -1.3310 43 1 2.6275 3.8983 1.0983 44 1 3.2595 3.4689 -0.5244 45 1 3.2574 -1.1569 -0.2291 46 1 1.6039 -1.6085 2.0992 47 1 2.6942 -2.8891 1.4152 48 1 -1.4485 -4.0413 -2.1977 49 1 2.1870 -3.1890 -1.0958 50 1 0.8608 -2.0480 -1.5810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043887631.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:53 Heat of formation + Delta-G solvation = -12.542881 kcal Electronic energy + Delta-G solvation = -30388.321370 eV Core-core repulsion = 26367.299708 eV Total energy + Delta-G solvation = -4021.021661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.96596 -41.56943 -40.57964 -39.32128 -35.97202 -35.57172 -34.09105 -30.73620 -30.57612 -29.65938 -28.28608 -28.02428 -27.65966 -26.40859 -25.55696 -23.88869 -22.95412 -21.32010 -20.18909 -19.72869 -18.84323 -18.39718 -17.84000 -17.38132 -16.90220 -16.61003 -16.20352 -16.05002 -15.79212 -15.64435 -15.41941 -15.08610 -14.80129 -14.77060 -14.53592 -14.35538 -14.02172 -13.80775 -13.64630 -13.32888 -13.26894 -13.01897 -12.85021 -12.78309 -12.77567 -12.73434 -12.49584 -12.46983 -12.26625 -12.11228 -12.00491 -11.96238 -11.85735 -11.75234 -11.52297 -11.36235 -11.01071 -10.72985 -9.64470 -9.38264 -8.94578 -7.90794 -5.21974 1.20798 1.48636 1.49464 1.57585 1.71314 2.47500 2.73595 3.05878 3.14861 3.21938 3.32251 3.41655 3.60228 3.71825 3.90545 3.98582 4.01831 4.13516 4.23443 4.28842 4.35941 4.45332 4.50783 4.59618 4.62575 4.67233 4.70143 4.76330 4.77764 4.82095 4.85989 4.90778 4.91416 4.96459 5.00697 5.01841 5.07755 5.17251 5.24544 5.25039 5.33964 5.45074 5.45366 5.57848 5.79845 5.87825 6.07353 6.31822 6.84210 6.91046 7.59477 8.58374 9.26666 Molecular weight = 327.21amu Principal moments of inertia in cm(-1) A = 0.022231 B = 0.003207 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.204118 B = 8729.399792 C = 9232.410109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.566 5.566 3 C 0.503 3.497 4 O -0.557 6.557 5 C 0.105 3.895 6 F -0.188 7.188 7 C -0.148 4.148 8 C 0.038 3.962 9 N -0.508 5.508 10 C 0.089 3.911 11 C -0.136 4.136 12 C -0.136 4.136 13 C -0.184 4.184 14 C 0.037 3.963 15 C 0.098 3.902 16 C 0.108 3.892 17 N -0.625 5.625 18 C -0.223 4.223 19 H 0.080 0.920 20 C -0.053 4.053 21 N -0.946 5.946 22 Si 0.970 3.030 23 H -0.283 1.283 24 H -0.298 1.298 25 H -0.273 1.273 26 C 0.153 3.847 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.113 0.887 46 H 0.043 0.957 47 H 0.059 0.941 48 H 0.249 0.751 49 H 0.035 0.965 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.769 21.466 -1.964 22.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.295 5.295 3 C 0.289 3.711 4 O -0.437 6.437 5 C 0.083 3.917 6 F -0.168 7.168 7 C -0.186 4.186 8 C -0.089 4.089 9 N -0.233 5.233 10 C 0.000 4.000 11 C -0.193 4.193 12 C -0.193 4.193 13 C -0.242 4.242 14 C -0.091 4.091 15 C -0.007 4.007 16 C -0.019 4.019 17 N -0.352 5.352 18 C -0.351 4.351 19 H 0.098 0.902 20 C -0.246 4.246 21 N -0.594 5.594 22 Si 0.799 3.201 23 H -0.210 1.210 24 H -0.225 1.225 25 H -0.198 1.198 26 C 0.027 3.973 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.123 0.877 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.131 0.869 46 H 0.062 0.938 47 H 0.077 0.923 48 H 0.058 0.942 49 H 0.052 0.948 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.681 21.548 -1.595 22.341 hybrid contribution -0.447 -1.612 -0.223 1.688 sum 5.234 19.936 -1.819 20.692 Atomic orbital electron populations 1.21954 0.77762 1.03657 1.02027 1.47389 1.07933 1.04570 1.69567 1.20971 0.87893 0.85610 0.76641 1.90655 1.14130 1.87405 1.51481 1.21883 0.89295 0.93163 0.87397 1.92908 1.68385 1.97203 1.58316 1.23188 1.02709 0.99010 0.93705 1.22974 1.00559 0.91398 0.93982 1.65124 1.23544 1.07866 1.26756 1.21367 0.91812 0.91777 0.95086 1.21874 1.00052 0.97903 0.99520 1.21824 1.00324 1.00315 0.96856 1.22525 0.99565 1.02087 1.00027 1.23590 0.95072 0.87935 1.02541 1.22545 0.95994 0.83172 0.98968 1.22924 0.90151 0.93693 0.95097 1.46012 1.14599 1.71063 1.03523 1.19177 0.91020 1.32248 0.92634 0.90238 1.25420 1.01795 1.02107 0.95319 1.69996 1.36102 1.53784 0.99549 0.85191 0.80507 0.77256 0.77165 1.20986 1.22484 1.19846 1.22375 0.91905 0.91584 0.91461 0.93482 0.89808 0.90515 0.89298 0.87732 0.91130 0.88221 0.91996 0.90657 0.92127 0.93520 0.90589 0.92076 0.92371 0.90248 0.92986 0.89102 0.89990 0.86907 0.93823 0.92339 0.94166 0.94774 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.24 8.52 127.77 1.09 4.33 16 2 N -0.57 -20.60 3.12 -821.38 -2.56 -23.16 16 3 C 0.50 17.03 6.71 87.66 0.59 17.62 16 4 O -0.56 -20.86 15.22 -3.04 -0.05 -20.90 16 5 C 0.10 2.91 1.05 -10.33 -0.01 2.90 16 6 F -0.19 -5.80 15.61 44.97 0.70 -5.10 16 7 C -0.15 -3.32 5.15 31.47 0.16 -3.16 16 8 C 0.04 0.69 5.10 86.45 0.44 1.13 16 9 N -0.51 -10.27 5.08 -833.10 -4.24 -14.51 16 10 C 0.09 1.41 0.69 3.53 0.00 1.42 16 11 C -0.14 -1.70 8.26 71.98 0.59 -1.10 16 12 C -0.14 -2.06 8.49 71.98 0.61 -1.44 16 13 C -0.18 -2.86 7.58 71.98 0.55 -2.32 16 14 C 0.04 0.91 4.41 86.61 0.38 1.29 16 15 C 0.10 3.80 4.68 45.55 0.21 4.02 16 16 C 0.11 4.41 8.31 83.18 0.69 5.10 16 17 N -0.63 -30.51 2.48 -738.05 -1.83 -32.34 16 18 C -0.22 -11.88 10.34 84.03 0.87 -11.02 16 19 H 0.08 4.16 7.84 -2.92 -0.02 4.14 16 20 C -0.05 -2.83 5.50 84.86 0.47 -2.36 16 21 N -0.95 -53.77 11.65 21.65 0.25 -53.52 16 22 Si 0.97 43.90 29.56 68.60 2.03 45.93 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 C 0.15 6.96 6.36 83.27 0.53 7.49 16 27 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.08 2.56 4.13 -2.39 -0.01 2.55 16 29 H 0.08 3.42 5.38 -2.39 -0.01 3.41 16 30 H 0.09 2.02 7.84 -2.39 -0.02 2.00 16 31 H 0.10 2.25 6.59 -2.39 -0.02 2.23 16 32 H 0.07 1.12 5.29 -2.38 -0.01 1.11 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.72 6.75 -2.39 -0.02 0.70 16 37 H 0.05 0.79 7.18 -2.38 -0.02 0.78 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 0.93 6.07 -2.39 -0.01 0.92 16 41 H 0.08 0.98 8.13 -2.39 -0.02 0.96 16 42 H 0.05 0.95 6.39 -2.39 -0.02 0.94 16 43 H 0.09 2.31 7.74 -2.39 -0.02 2.29 16 44 H 0.08 2.08 4.80 -2.38 -0.01 2.07 16 45 H 0.11 4.12 7.30 -2.39 -0.02 4.10 16 46 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 48 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 49 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.05 2.49 6.45 -2.38 -0.02 2.48 16 Total: -1.00 -62.19 374.66 2.42 -59.77 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.94 Total: 19.94 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: 7.17 Total: 23.90 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -8.38 Total: -123.53 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.05 Total: -20.90 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.70 Total: -5.10 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -62.19 2.42 -59.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043887631.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.228 kcal (2) G-P(sol) polarization free energy of solvation -62.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds