Wall clock time and date at job start Tue Mar 31 2020 04:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00621 * 2 1 4 4 H 1.09005 * 110.77288 * 26.76634 * 3 2 1 5 5 C 1.54317 * 110.72070 * 263.52850 * 3 2 1 6 6 N 1.47023 * 107.26777 * 219.44132 * 5 3 2 7 7 C 1.36943 * 125.64472 * 178.89676 * 6 5 3 8 8 H 1.08004 * 119.99446 * 180.02562 * 7 6 5 9 9 C 1.38809 * 120.00282 * 0.02562 * 7 6 5 10 10 N 1.31622 * 119.99996 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99970 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47385 * 0.02562 * 11 9 7 13 13 H 1.48494 * 109.47215 * 120.00422 * 11 9 7 14 14 H 1.48509 * 109.47145 * 240.00226 * 11 9 7 15 15 C 1.47421 * 108.70687 * 358.93877 * 6 5 3 16 16 C 1.54910 * 104.82950 * 24.12867 * 15 6 5 17 17 H 1.08996 * 111.03780 * 81.07913 * 16 15 6 18 18 N 1.46500 * 111.00569 * 204.91547 * 16 15 6 19 19 C 1.34777 * 120.00372 * 267.20293 * 18 16 15 20 20 O 1.21286 * 119.99653 * 359.97438 * 19 18 16 21 21 C 1.50699 * 120.00025 * 180.02562 * 19 18 16 22 22 C 1.53006 * 109.46874 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.47087 * 179.97438 * 22 21 19 24 24 C 1.50696 * 109.47192 * 179.97438 * 23 22 21 25 25 O 1.21280 * 120.00095 * 0.02562 * 24 23 22 26 26 N 1.34771 * 119.99966 * 179.97438 * 24 23 22 27 27 C 1.46506 * 120.00084 * 180.02562 * 26 24 23 28 28 C 1.46496 * 120.00157 * 359.97438 * 26 24 23 29 29 H 1.08994 * 109.46788 * 59.99554 * 1 2 3 30 30 H 1.08994 * 109.47273 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46862 * 299.99699 * 1 2 3 32 32 H 1.09000 * 109.88486 * 338.85145 * 5 3 2 33 33 H 1.08997 * 109.88414 * 99.87242 * 5 3 2 34 34 H 0.96997 * 119.99747 * 179.97438 * 10 9 7 35 35 H 1.08999 * 110.36711 * 265.29497 * 15 6 5 36 36 H 1.08991 * 110.37075 * 142.96828 * 15 6 5 37 37 H 0.97007 * 119.99649 * 87.19123 * 18 16 15 38 38 H 1.08996 * 109.47141 * 59.99835 * 21 19 18 39 39 H 1.08997 * 109.46883 * 299.99566 * 21 19 18 40 40 H 1.08993 * 109.47229 * 59.99338 * 22 21 19 41 41 H 1.09007 * 109.46468 * 299.99807 * 22 21 19 42 42 H 1.09004 * 109.47223 * 59.99398 * 23 22 21 43 43 H 1.08997 * 109.46785 * 299.99881 * 23 22 21 44 44 H 1.09001 * 109.47060 * 270.00360 * 27 26 24 45 45 H 1.09004 * 109.47073 * 29.99849 * 27 26 24 46 46 H 1.09000 * 109.47212 * 149.99932 * 27 26 24 47 47 H 1.09006 * 109.47383 * 180.02562 * 28 26 24 48 48 H 1.08999 * 109.47596 * 299.99902 * 28 26 24 49 49 H 1.09000 * 109.47160 * 60.00099 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3364 2.0287 0.4590 5 6 2.3811 1.7380 -1.4342 6 7 3.6686 2.4437 -1.3580 7 6 4.3548 2.9689 -2.4204 8 1 5.2975 3.4709 -2.2594 9 6 3.8390 2.8560 -3.7041 10 7 2.6900 2.2446 -3.9003 11 14 4.7755 3.5717 -5.1533 12 1 6.0300 4.2020 -4.6694 13 1 5.1050 2.4881 -6.1136 14 1 3.9362 4.5937 -5.8291 15 6 4.0990 2.4916 0.0511 16 6 3.3818 1.2956 0.7256 17 1 3.9156 0.3637 0.5394 18 7 3.2170 1.5249 2.1631 19 6 4.1465 1.0736 3.0285 20 8 5.1192 0.4773 2.6171 21 6 3.9766 1.3090 4.5072 22 6 5.1616 0.7003 5.2599 23 6 4.9895 0.9399 6.7612 24 6 6.1562 0.3398 7.5026 25 8 7.0387 -0.2235 6.8905 26 7 6.2194 0.4301 8.8458 27 6 7.3539 -0.1528 9.5666 28 6 5.1542 1.1120 9.5851 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.4769 0.8601 -2.0731 33 1 1.6140 2.4031 -1.8307 34 1 2.3294 2.1661 -4.7973 35 1 3.7874 3.4292 0.5113 36 1 5.1803 2.3743 0.1218 37 1 2.4388 2.0016 2.4921 38 1 3.0524 0.8409 4.8458 39 1 3.9338 2.3806 4.7020 40 1 6.0860 1.1680 4.9213 41 1 5.2039 -0.3713 5.0650 42 1 4.0648 0.4725 7.1001 43 1 4.9473 2.0115 6.9556 44 1 7.1257 -1.1858 9.8290 45 1 8.2398 -0.1263 8.9321 46 1 7.5404 0.4202 10.4750 47 1 5.3773 1.0848 10.6518 48 1 5.0885 2.1485 9.2545 49 1 4.2045 0.6104 9.3994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213738607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:20 Heat of formation + Delta-G solvation = -89.849466 kcal Electronic energy + Delta-G solvation = -27994.095256 eV Core-core repulsion = 23957.348540 eV Total energy + Delta-G solvation = -4036.746716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.20643 -39.62674 -38.13450 -35.95784 -35.86180 -34.42308 -33.95906 -31.76107 -29.82408 -28.75078 -28.03481 -27.05516 -26.11861 -25.98905 -24.19892 -22.44733 -20.53831 -20.41739 -19.86623 -19.50954 -17.52684 -17.07114 -16.78050 -16.61759 -16.35926 -16.01496 -15.57278 -15.48702 -14.77363 -14.42044 -14.29053 -14.17120 -13.89214 -13.41753 -13.31160 -13.21124 -13.17428 -13.02865 -12.84306 -12.49232 -12.29965 -12.05205 -12.02573 -11.85057 -11.55684 -11.50498 -11.21232 -10.99314 -10.89148 -10.80778 -10.70940 -10.12975 -10.09584 -9.96570 -9.78301 -9.61399 -9.09204 -9.08472 -8.71602 -8.53516 -6.86741 -5.71582 -3.06485 2.36261 2.62507 2.88447 3.36092 3.42093 3.47719 3.50224 4.15862 4.19203 4.51919 4.58260 4.64302 4.72365 4.83968 4.87860 4.94718 5.10927 5.13391 5.17383 5.24794 5.27545 5.36367 5.40454 5.44218 5.50104 5.51370 5.58548 5.66898 5.74062 5.87938 5.92979 6.00918 6.03544 6.09176 6.19813 6.30672 6.57544 6.66767 6.90577 6.94987 7.27820 7.50268 7.72646 7.76010 7.88411 7.89109 8.22271 8.49795 9.19529 9.79574 10.42751 11.39908 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.018847 B = 0.002157 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.276767 B =12976.589570 C =14039.478586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.377 6.377 3 C 0.055 3.945 4 H 0.062 0.938 5 C 0.165 3.835 6 N -0.601 5.601 7 C -0.227 4.227 8 H 0.081 0.919 9 C -0.009 4.009 10 N -0.922 5.922 11 Si 0.915 3.085 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.291 1.291 15 C 0.131 3.869 16 C 0.131 3.869 17 H 0.106 0.894 18 N -0.719 5.719 19 C 0.510 3.490 20 O -0.534 6.534 21 C -0.139 4.139 22 C -0.091 4.091 23 C -0.137 4.137 24 C 0.510 3.490 25 O -0.530 6.530 26 N -0.629 5.629 27 C 0.084 3.916 28 C 0.080 3.920 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.252 0.748 35 H 0.023 0.977 36 H 0.050 0.950 37 H 0.395 0.605 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.062 0.938 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.711 -0.633 28.384 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.004 4.004 4 H 0.080 0.920 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.355 4.355 8 H 0.099 0.901 9 C -0.205 4.205 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.218 1.218 15 C 0.003 3.997 16 C 0.026 3.974 17 H 0.124 0.876 18 N -0.369 5.369 19 C 0.296 3.704 20 O -0.410 6.410 21 C -0.179 4.179 22 C -0.129 4.129 23 C -0.177 4.177 24 C 0.298 3.702 25 O -0.406 6.406 26 N -0.365 5.365 27 C -0.059 4.059 28 C -0.063 4.063 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.229 0.771 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.081 0.919 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.429 -1.535 27.522 27.671 hybrid contribution -0.405 0.905 -0.481 1.102 sum -2.834 -0.630 27.041 27.196 Atomic orbital electron populations 1.22700 0.81835 1.02011 0.99675 1.87919 1.18997 1.27609 1.95031 1.23849 0.93012 0.84001 0.99505 0.91979 1.21548 0.88210 0.97240 0.89061 1.44272 1.21383 1.66476 1.00717 1.19130 1.02277 1.29371 0.84689 0.90090 1.24827 0.97461 1.00771 0.97422 1.69953 1.19192 1.47369 1.20497 0.85998 0.78805 0.78176 0.82513 1.20422 1.21680 1.21781 1.21823 0.97809 0.93853 0.86200 1.22387 0.96248 1.01022 0.77765 0.87596 1.45969 1.25131 1.58698 1.07127 1.20586 0.82760 0.78694 0.88406 1.90748 1.29841 1.40699 1.79722 1.21666 1.00829 1.03122 0.92321 1.21093 0.98103 1.03109 0.90607 1.21718 0.97007 1.02272 0.96733 1.20828 0.88077 0.79674 0.81574 1.90749 1.40060 1.42856 1.66917 1.47832 1.24081 1.57906 1.06670 1.21664 0.89602 0.97988 0.96624 1.21798 0.90327 0.97096 0.97090 0.93677 0.90285 0.94904 0.91997 0.93403 0.93733 0.95986 0.93211 0.77149 0.89042 0.88936 0.90256 0.90317 0.88842 0.88792 0.92837 0.90484 0.91345 0.90481 0.91892 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.85 101.05 1.10 1.58 16 2 O -0.38 -7.04 10.43 -35.23 -0.37 -7.41 16 3 C 0.06 1.06 3.09 -24.90 -0.08 0.98 16 4 H 0.06 1.03 7.69 -51.93 -0.40 0.63 16 5 C 0.16 4.05 5.15 -3.07 -0.02 4.04 16 6 N -0.60 -15.70 3.39 -170.08 -0.58 -16.28 16 7 C -0.23 -6.44 10.28 -15.06 -0.15 -6.60 16 8 H 0.08 2.24 7.83 -52.48 -0.41 1.82 16 9 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 10 N -0.92 -27.29 10.31 55.49 0.57 -26.72 16 11 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 C 0.13 2.84 6.93 -2.53 -0.02 2.82 16 16 C 0.13 2.51 3.15 -65.78 -0.21 2.30 16 17 H 0.11 2.36 7.54 -51.93 -0.39 1.97 16 18 N -0.72 -10.39 5.20 -51.73 -0.27 -10.66 16 19 C 0.51 7.59 7.83 -10.99 -0.09 7.50 16 20 O -0.53 -10.66 15.62 5.55 0.09 -10.57 16 21 C -0.14 -1.30 5.70 -27.88 -0.16 -1.46 16 22 C -0.09 -1.00 3.79 -26.73 -0.10 -1.10 16 23 C -0.14 -1.02 4.52 -27.89 -0.13 -1.15 16 24 C 0.51 5.32 7.67 -10.99 -0.08 5.23 16 25 O -0.53 -8.08 15.56 5.56 0.09 -7.99 16 26 N -0.63 -4.67 3.27 -189.51 -0.62 -5.29 16 27 C 0.08 0.55 10.41 59.85 0.62 1.17 16 28 C 0.08 0.27 9.74 59.84 0.58 0.85 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 32 H 0.06 1.74 7.30 -51.93 -0.38 1.36 16 33 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 34 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.40 4.30 8.57 -40.82 -0.35 3.95 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.07 8.06 -51.93 -0.42 0.65 16 41 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 42 H 0.09 0.48 7.87 -51.93 -0.41 0.07 16 43 H 0.09 0.48 7.86 -51.93 -0.41 0.08 16 44 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.65 7.42 -51.93 -0.39 0.27 16 46 H 0.07 0.27 7.92 -51.93 -0.41 -0.14 16 47 H 0.08 0.14 7.79 -51.93 -0.40 -0.26 16 48 H 0.06 0.15 7.85 -51.93 -0.41 -0.25 16 49 H 0.06 0.15 7.85 -51.93 -0.41 -0.25 16 LS Contribution 399.78 15.07 6.02 6.02 Total: -1.00 -37.90 399.78 -7.42 -45.32 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -8.51 Total: 0.31 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 1.18 Total: 15.83 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -0.89 Total: -58.95 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.19 Total: -25.97 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.90 -7.42 -45.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213738607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.530 kcal (2) G-P(sol) polarization free energy of solvation -37.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds