Wall clock time and date at job start Tue Mar 31 2020 05:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.46684 * 2 1 4 4 C 1.36903 * 120.00108 * 264.72900 * 3 2 1 5 5 H 1.07997 * 119.99955 * 130.56531 * 4 3 2 6 6 C 1.39018 * 120.00049 * 310.55624 * 4 3 2 7 7 N 1.31376 * 120.00328 * 170.31415 * 6 4 3 8 8 Si 1.86803 * 120.00245 * 350.31634 * 6 4 3 9 9 H 1.48506 * 109.47068 * 95.28542 * 8 6 4 10 10 H 1.48494 * 109.47184 * 215.28844 * 8 6 4 11 11 H 1.48502 * 109.47049 * 335.29000 * 8 6 4 12 12 C 1.34780 * 119.99760 * 84.73093 * 3 2 1 13 13 O 1.21631 * 120.00067 * 2.18159 * 12 3 2 14 14 C 1.47428 * 120.00206 * 182.17660 * 12 3 2 15 15 C 1.39769 * 120.19692 * 307.85012 * 14 12 3 16 16 C 1.37773 * 119.89991 * 179.97438 * 15 14 12 17 17 S 1.76204 * 119.84447 * 179.97438 * 16 15 14 18 18 N 1.65602 * 107.21777 * 90.00011 * 17 16 15 19 19 O 1.42093 * 106.40188 * 203.54168 * 17 16 15 20 20 O 1.42100 * 106.40402 * 336.46247 * 17 16 15 21 21 C 1.38553 * 120.30860 * 359.97438 * 16 15 14 22 22 C 1.38077 * 120.39815 * 0.04369 * 21 16 15 23 23 C 1.38678 * 120.09483 * 359.95308 * 22 21 16 24 24 O 1.35653 * 120.15752 * 180.29764 * 23 22 21 25 25 C 1.42906 * 116.99782 * 359.72559 * 24 23 22 26 26 H 1.08992 * 109.47210 * 60.00064 * 1 2 3 27 27 H 1.09004 * 109.46742 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46970 * 299.99100 * 1 2 3 29 29 H 1.08998 * 109.46957 * 240.00357 * 2 1 3 30 30 H 1.09000 * 109.46996 * 120.00110 * 2 1 3 31 31 H 0.96997 * 120.00603 * 180.02562 * 7 6 4 32 32 H 1.08006 * 120.04765 * 359.94812 * 15 14 12 33 33 H 0.97007 * 120.00032 * 0.02562 * 18 17 16 34 34 H 0.97002 * 120.00129 * 179.97438 * 18 17 16 35 35 H 1.07998 * 119.80207 * 180.02562 * 21 16 15 36 36 H 1.08011 * 119.95049 * 180.02562 * 22 21 16 37 37 H 1.09003 * 109.46859 * 180.02562 * 25 24 23 38 38 H 1.09003 * 109.47137 * 299.99966 * 25 24 23 39 39 H 1.08998 * 109.47009 * 59.99975 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3491 1.9904 -1.1806 5 1 1.9617 2.9723 -1.4087 6 6 3.1838 1.3449 -2.0857 7 7 3.3499 1.8370 -3.2925 8 14 4.0694 -0.2222 -1.5863 9 1 3.2790 -1.3995 -2.0274 10 1 5.4096 -0.2583 -2.2246 11 1 4.2234 -0.2546 -0.1096 12 6 2.1418 2.0523 1.1623 13 8 1.8858 1.4984 2.2145 14 6 2.5873 3.4577 1.1584 15 6 3.7575 3.8223 0.4868 16 6 4.1679 5.1375 0.4867 17 16 5.6438 5.5955 -0.3599 18 7 5.2180 5.9838 -1.9124 19 8 6.0963 6.7990 0.2450 20 8 6.4392 4.4210 -0.4439 21 6 3.4255 6.1017 1.1492 22 6 2.2676 5.7553 1.8170 23 6 1.8392 4.4364 1.8278 24 8 0.6986 4.0957 2.4784 25 6 -0.0106 5.1465 3.1380 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.9320 1.3866 -3.9242 32 1 4.3395 3.0741 -0.0309 33 1 4.2896 5.9303 -2.1885 34 1 5.8968 6.2654 -2.5455 35 1 3.7545 7.1303 1.1435 36 1 1.6942 6.5129 2.3307 37 1 -0.9006 4.7388 3.6175 38 1 0.6320 5.6011 3.8919 39 1 -0.3040 5.9008 2.4079 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270967607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:12 Heat of formation + Delta-G solvation = -107.240237 kcal Electronic energy + Delta-G solvation = -27196.535650 eV Core-core repulsion = 23232.402834 eV Total energy + Delta-G solvation = -3964.132816 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.28831 -38.59016 -37.15794 -36.81987 -35.51925 -35.09296 -32.86903 -32.28427 -31.49501 -30.29644 -29.65107 -27.34440 -25.03427 -23.89186 -22.42629 -22.30579 -19.86420 -19.07170 -18.28096 -17.77082 -17.12977 -16.77389 -16.43753 -16.11168 -15.68427 -15.43770 -15.23704 -15.05249 -14.48146 -14.09193 -13.72842 -13.48976 -13.25149 -13.09510 -12.70510 -12.59590 -12.22266 -12.02917 -11.91136 -11.85561 -11.77680 -11.63497 -11.42488 -11.23735 -11.08122 -11.02643 -10.74302 -10.64603 -10.17689 -10.10450 -9.95209 -9.31148 -8.87285 -8.71742 -8.33268 -7.75516 -6.53023 -4.29511 0.71156 1.09420 1.42872 3.04296 3.20104 3.27072 3.28884 3.32498 3.49776 3.82952 4.01493 4.09907 4.31439 4.70267 4.86585 4.87648 5.09736 5.11323 5.12804 5.40358 5.45312 5.65813 5.76387 5.81671 6.01737 6.09128 6.11571 6.13967 6.27813 6.29181 6.33561 6.41869 6.62074 6.83768 6.87625 7.30427 7.37135 7.42620 8.00143 8.16068 8.86349 9.21361 9.58336 10.55331 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010113 B = 0.007276 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.052417 B = 3847.574537 C = 5968.391598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.100 3.900 3 N -0.461 5.461 4 C -0.351 4.351 5 H 0.100 0.900 6 C 0.072 3.928 7 N -0.859 5.859 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.257 1.257 12 C 0.536 3.464 13 O -0.577 6.577 14 C -0.139 4.139 15 C 0.087 3.913 16 C -0.724 4.724 17 S 2.707 3.293 18 N -1.247 6.247 19 O -0.978 6.978 20 O -0.963 6.963 21 C 0.024 3.976 22 C -0.242 4.242 23 C 0.213 3.787 24 O -0.291 6.291 25 C 0.023 3.977 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.277 0.723 32 H 0.160 0.840 33 H 0.421 0.579 34 H 0.416 0.584 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.591 8.873 3.924 10.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.023 4.023 3 N -0.182 5.182 4 C -0.478 4.478 5 H 0.118 0.882 6 C -0.136 4.136 7 N -0.493 5.493 8 Si 0.699 3.301 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.181 1.181 12 C 0.324 3.676 13 O -0.460 6.460 14 C -0.143 4.143 15 C 0.067 3.933 16 C -0.813 4.813 17 S 2.797 3.203 18 N -0.921 5.921 19 O -0.967 6.967 20 O -0.953 6.953 21 C 0.004 3.996 22 C -0.262 4.262 23 C 0.164 3.836 24 O -0.202 6.202 25 C -0.072 4.072 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.177 0.823 33 H 0.249 0.751 34 H 0.246 0.754 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.826 8.328 4.800 9.784 hybrid contribution -0.547 -0.538 -0.410 0.870 sum -2.373 7.790 4.390 9.251 Atomic orbital electron populations 1.21998 0.96427 1.00726 1.02255 1.21574 0.94468 0.85238 1.00993 1.43586 1.57229 1.11614 1.05734 1.19000 1.29859 1.04985 0.93938 0.88221 1.25468 0.95191 0.98035 0.94932 1.69612 1.35621 1.39979 1.04085 0.86913 0.79629 0.82989 0.80606 1.19902 1.20822 1.18117 1.17980 0.79984 0.85712 0.83911 1.90666 1.54432 1.69478 1.31449 1.19315 0.97423 0.94334 1.03266 1.21056 0.91723 0.93788 0.86717 1.30182 1.25788 1.01921 1.23443 1.01198 0.72880 0.73658 0.72589 1.52952 1.19414 1.88380 1.31378 1.93554 1.79336 1.47585 1.76273 1.93608 1.66393 1.49370 1.85901 1.20660 0.90976 0.98285 0.89634 1.21137 1.01165 0.94933 1.08918 1.19288 0.84553 0.92162 0.87561 1.86250 1.33872 1.36209 1.63825 1.23152 0.96627 0.90869 0.96576 0.92186 0.92989 0.92647 0.91512 0.91566 0.91221 0.82300 0.75148 0.75446 0.84088 0.84517 0.88088 0.92417 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 10.20 37.16 0.38 -2.57 16 2 C 0.10 2.19 4.51 -4.04 -0.02 2.17 16 3 N -0.46 -11.01 2.02 -116.03 -0.23 -11.24 16 4 C -0.35 -8.68 7.11 -15.00 -0.11 -8.79 16 5 H 0.10 2.59 7.77 -52.49 -0.41 2.18 16 6 C 0.07 1.83 5.40 -17.46 -0.09 1.73 16 7 N -0.86 -22.19 13.95 55.50 0.77 -21.41 16 8 Si 0.87 20.25 24.87 -169.99 -4.23 16.02 16 9 H -0.27 -6.05 6.91 56.52 0.39 -5.66 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.26 -6.12 7.00 56.52 0.40 -5.73 16 12 C 0.54 12.88 6.81 -12.52 -0.09 12.79 16 13 O -0.58 -14.87 16.33 -0.23 0.00 -14.88 16 14 C -0.14 -2.95 5.02 -104.85 -0.53 -3.48 16 15 C 0.09 1.75 7.80 -39.18 -0.31 1.45 16 16 C -0.72 -12.11 5.94 -39.64 -0.24 -12.35 16 17 S 2.71 42.45 6.28 -107.50 -0.67 41.78 16 18 N -1.25 -15.39 9.55 60.35 0.58 -14.81 16 19 O -0.98 -16.31 17.27 -57.17 -0.99 -17.30 16 20 O -0.96 -18.85 17.26 -57.17 -0.99 -19.84 16 21 C 0.02 0.35 9.51 -39.52 -0.38 -0.03 16 22 C -0.24 -3.50 9.03 -39.48 -0.36 -3.85 16 23 C 0.21 3.87 6.68 -38.68 -0.26 3.62 16 24 O -0.29 -5.08 9.64 -24.14 -0.23 -5.32 16 25 C 0.02 0.25 9.81 101.05 0.99 1.24 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.46 4.28 -51.93 -0.22 1.24 16 30 H 0.07 1.45 7.55 -51.93 -0.39 1.05 16 31 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.16 3.46 6.83 -52.48 -0.36 3.11 16 33 H 0.42 4.76 8.92 -34.47 -0.31 4.46 16 34 H 0.42 4.17 8.96 -34.47 -0.31 3.86 16 35 H 0.14 1.62 7.60 -52.49 -0.40 1.22 16 36 H 0.14 1.46 6.30 -52.48 -0.33 1.13 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 39 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 LS Contribution 340.42 15.07 5.13 5.13 Total: -1.00 -34.03 340.42 -6.22 -40.25 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -4.36 Total: 9.69 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -0.99 Total: -8.08 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 1.12 Total: -47.47 kcal Atomic # 8 Polarization: -55.12 SS G_CDS: -2.21 Total: -57.33 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.23 Total: 16.02 kcal Atomic # 16 Polarization: 42.45 SS G_CDS: -0.67 Total: 41.78 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.03 -6.22 -40.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270967607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.986 kcal (2) G-P(sol) polarization free energy of solvation -34.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds