Wall clock time and date at job start Tue Mar 31 2020 06:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.46824 * 2 1 4 4 C 1.46499 * 119.99936 * 85.00335 * 3 2 1 5 5 C 1.50704 * 109.46882 * 84.99554 * 4 3 2 6 6 H 1.07992 * 120.00253 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99387 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00317 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99593 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47390 * 89.99794 * 9 7 5 11 11 H 1.48503 * 109.47067 * 210.00006 * 9 7 5 12 12 H 1.48504 * 109.47093 * 329.99809 * 9 7 5 13 13 S 1.65597 * 120.00079 * 264.72374 * 3 2 1 14 14 O 1.42095 * 106.40469 * 203.54076 * 13 3 2 15 15 O 1.42098 * 106.40441 * 336.46418 * 13 3 2 16 16 N 1.65602 * 107.21619 * 90.00287 * 13 3 2 17 17 C 1.43754 * 120.43157 * 269.72371 * 16 13 3 18 18 C 1.53871 * 115.82293 * 267.92094 * 17 16 13 19 19 O 1.44958 * 110.70085 * 318.61608 * 18 17 16 20 20 C 1.39714 * 115.12789 * 320.77983 * 19 18 17 21 21 C 1.52679 * 106.09450 * 98.22170 * 20 19 18 22 22 F 1.39894 * 108.65863 * 150.65092 * 21 20 19 23 23 F 1.39905 * 108.54660 * 32.70984 * 21 20 19 24 24 C 1.46930 * 113.61803 * 271.72405 * 21 20 19 25 25 H 1.09003 * 109.47335 * 299.99547 * 1 2 3 26 26 H 1.09002 * 109.47311 * 59.99668 * 1 2 3 27 27 H 1.09002 * 109.46959 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46886 * 240.00642 * 2 1 3 29 29 H 1.08999 * 109.47559 * 119.99873 * 2 1 3 30 30 H 1.08991 * 109.47463 * 204.99792 * 4 3 2 31 31 H 1.09000 * 109.46878 * 325.00020 * 4 3 2 32 32 H 0.97005 * 120.00079 * 179.97438 * 8 7 5 33 33 H 1.09005 * 108.27544 * 29.34860 * 17 16 13 34 34 H 1.08999 * 108.28335 * 146.22657 * 17 16 13 35 35 H 1.09001 * 109.31029 * 198.27116 * 18 17 16 36 36 H 1.08997 * 109.16225 * 78.87071 * 18 17 16 37 37 H 1.09004 * 110.11834 * 339.07575 * 20 19 18 38 38 H 1.08995 * 110.12392 * 217.36592 * 20 19 18 39 39 H 1.08999 * 109.86811 * 298.48926 * 24 21 20 40 40 H 1.09003 * 109.93080 * 177.47535 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1582 2.1087 1.2639 5 6 3.4948 1.7888 1.8823 6 1 4.1723 1.1117 1.3835 7 6 3.8524 2.3606 3.0849 8 7 3.0275 3.1855 3.6920 9 14 5.5094 1.9646 3.8510 10 1 6.5224 2.9383 3.3705 11 1 5.4039 2.0492 5.3299 12 1 5.9192 0.5913 3.4619 13 16 2.4185 2.1180 -1.4280 14 8 3.3332 3.1554 -1.1018 15 8 2.7200 1.0763 -2.3463 16 7 1.0520 2.8611 -1.9961 17 6 0.1501 2.1588 -2.8678 18 6 0.4058 2.3296 -4.3755 19 8 0.7382 3.7060 -4.6861 20 6 0.0098 4.6662 -3.9793 21 6 0.9000 5.1026 -2.8181 22 9 0.5954 6.4291 -2.4947 23 9 2.2348 5.0393 -3.2326 24 6 0.7426 4.2769 -1.6130 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8932 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0921 3.1802 1.0757 31 1 1.3617 1.8097 1.9453 32 1 3.2791 3.5874 4.5383 33 1 0.2079 1.0955 -2.6346 34 1 -0.8642 2.4960 -2.6541 35 1 -0.4893 2.0433 -4.9276 36 1 1.2326 1.6849 -4.6734 37 1 -0.9148 4.2311 -3.5999 38 1 -0.2114 5.5177 -4.6227 39 1 -0.2820 4.3464 -1.2476 40 1 1.4348 4.6115 -0.8403 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341885708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:20 Heat of formation + Delta-G solvation = -199.983847 kcal Electronic energy + Delta-G solvation = -29093.781648 eV Core-core repulsion = 24707.230731 eV Total energy + Delta-G solvation = -4386.550916 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.110 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.98823 -46.79260 -39.31756 -36.81907 -36.16746 -35.80948 -35.23271 -32.72470 -32.07405 -30.08737 -28.26199 -27.20189 -26.65782 -23.21367 -22.40975 -21.84185 -21.69721 -18.83201 -18.02632 -17.82350 -17.36810 -16.93094 -16.52947 -16.40904 -15.80836 -15.64426 -15.30558 -15.06291 -14.59108 -14.20038 -13.86885 -13.56761 -13.50509 -13.28822 -13.11328 -13.06959 -12.76018 -12.55124 -12.17093 -12.15576 -12.03466 -11.83273 -11.73629 -11.59833 -11.43108 -11.35132 -11.04469 -10.95520 -10.85283 -10.54138 -10.45500 -10.04739 -9.87959 -9.82301 -9.30124 -8.47811 -8.17467 -6.10544 -4.14547 0.97141 3.06862 3.31242 3.37557 3.40094 3.41855 3.74879 3.90361 4.09235 4.24783 4.38495 4.42150 4.59380 4.73759 4.76266 4.89414 5.11656 5.16354 5.24346 5.28460 5.33056 5.39049 5.46912 5.53883 5.61477 5.63810 5.80480 5.91041 6.17976 6.36099 6.48043 6.56771 6.85457 7.14784 7.32400 7.53129 7.86893 8.15036 8.87676 9.51187 10.98068 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.005097 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.456412 B = 5492.006673 C = 6241.858337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.115 3.885 3 N -0.988 5.988 4 C 0.258 3.742 5 C -0.530 4.530 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.273 1.273 13 S 2.776 3.224 14 O -0.948 6.948 15 O -0.988 6.988 16 N -0.998 5.998 17 C 0.084 3.916 18 C 0.033 3.967 19 O -0.360 6.360 20 C 0.033 3.967 21 C 0.254 3.746 22 F -0.202 7.202 23 F -0.182 7.182 24 C 0.077 3.923 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.264 0.736 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.741 -1.395 -12.977 18.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.012 4.012 3 N -0.831 5.831 4 C 0.136 3.864 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.198 1.198 13 S 2.785 3.215 14 O -0.931 6.931 15 O -0.972 6.972 16 N -0.833 5.833 17 C -0.044 4.044 18 C -0.045 4.045 19 O -0.278 6.278 20 C -0.046 4.046 21 C 0.215 3.785 22 F -0.183 7.183 23 F -0.163 7.163 24 C -0.049 4.049 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.737 -1.221 -13.348 17.817 hybrid contribution 0.358 -0.030 0.981 1.045 sum -11.379 -1.251 -12.368 16.852 Atomic orbital electron populations 1.22302 0.97223 1.01550 1.02011 1.21185 0.93079 0.83202 1.03727 1.57825 1.80736 1.21365 1.23134 1.19049 0.97567 0.90940 0.78822 1.21467 1.02011 1.27891 1.05573 0.92175 1.24918 0.97393 0.94750 0.96831 1.69908 1.36084 1.30192 1.17257 0.86516 0.84021 0.78982 0.78069 1.20340 1.21123 1.19778 1.02348 0.73055 0.73284 0.72847 1.93651 1.58336 1.57345 1.83812 1.93518 1.82613 1.57477 1.63558 1.58447 1.44432 1.20713 1.59749 1.21359 0.94416 0.98461 0.90158 1.23997 1.02858 0.82694 0.94955 1.87766 1.62193 1.14725 1.63087 1.22999 0.94162 0.94505 0.92911 1.21225 0.81336 0.79524 0.96397 1.93024 1.93109 1.38157 1.94059 1.93096 1.35369 1.96092 1.91743 1.21880 1.06148 0.80685 0.96230 0.91790 0.93505 0.92064 0.90593 0.89478 0.94723 0.94546 0.92638 0.88800 0.90373 0.90688 0.87650 0.89543 0.87178 0.87409 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.11 1.87 6.40 -4.04 -0.03 1.84 16 3 N -0.99 -19.63 2.82 -115.66 -0.33 -19.96 16 4 C 0.26 6.21 5.10 -5.19 -0.03 6.18 16 5 C -0.53 -14.62 9.38 -34.44 -0.32 -14.94 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -25.65 13.29 55.43 0.74 -24.91 16 9 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 S 2.78 54.95 6.01 -107.50 -0.65 54.31 16 14 O -0.95 -23.02 15.88 -57.17 -0.91 -23.93 16 15 O -0.99 -19.98 15.72 -57.17 -0.90 -20.88 16 16 N -1.00 -14.66 2.96 -116.39 -0.34 -15.01 16 17 C 0.08 0.89 4.33 -5.05 -0.02 0.87 16 18 C 0.03 0.34 7.27 37.61 0.27 0.61 16 19 O -0.36 -4.58 9.55 -32.15 -0.31 -4.89 16 20 C 0.03 0.35 6.09 36.99 0.23 0.57 16 21 C 0.25 3.53 1.91 -29.80 -0.06 3.48 16 22 F -0.20 -2.81 16.91 2.25 0.04 -2.77 16 23 F -0.18 -3.32 15.99 2.25 0.04 -3.28 16 24 C 0.08 1.06 5.36 -5.05 -0.03 1.03 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.50 6.01 -51.93 -0.31 0.19 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.17 6.91 -51.93 -0.36 0.81 16 29 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 30 H 0.03 0.88 7.61 -51.93 -0.40 0.49 16 31 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.09 0.94 6.13 -51.93 -0.32 0.62 16 34 H 0.08 0.57 7.08 -51.93 -0.37 0.20 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.09 0.62 6.34 -51.93 -0.33 0.29 16 38 H 0.11 0.96 8.12 -51.93 -0.42 0.54 16 39 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.13 2.06 7.25 -51.93 -0.38 1.69 16 LS Contribution 340.01 15.07 5.12 5.12 Total: -1.00 -34.55 340.01 -7.60 -42.14 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -5.38 Total: -2.18 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 0.30 Total: -0.46 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: 0.07 Total: -59.88 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -2.11 Total: -49.70 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.07 Total: -6.05 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 54.95 SS G_CDS: -0.65 Total: 54.31 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.55 -7.60 -42.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341885708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.843 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds