Wall clock time and date at job start Tue Mar 31 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.46824 * 2 1 4 4 C 1.46499 * 119.99936 * 85.00335 * 3 2 1 5 5 C 1.50704 * 109.46882 * 84.99554 * 4 3 2 6 6 H 1.07992 * 120.00253 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99387 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00317 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99593 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47390 * 89.99794 * 9 7 5 11 11 H 1.48503 * 109.47067 * 210.00006 * 9 7 5 12 12 H 1.48504 * 109.47093 * 329.99809 * 9 7 5 13 13 S 1.65597 * 120.00079 * 264.72374 * 3 2 1 14 14 O 1.42095 * 106.40469 * 203.54076 * 13 3 2 15 15 O 1.42098 * 106.40441 * 336.46418 * 13 3 2 16 16 N 1.65602 * 107.21619 * 90.00287 * 13 3 2 17 17 C 1.43754 * 120.43157 * 269.72371 * 16 13 3 18 18 C 1.53871 * 115.82293 * 267.92094 * 17 16 13 19 19 O 1.44958 * 110.70085 * 318.61608 * 18 17 16 20 20 C 1.39714 * 115.12789 * 320.77983 * 19 18 17 21 21 C 1.52679 * 106.09450 * 98.22170 * 20 19 18 22 22 F 1.39894 * 108.65863 * 150.65092 * 21 20 19 23 23 F 1.39905 * 108.54660 * 32.70984 * 21 20 19 24 24 C 1.46930 * 113.61803 * 271.72405 * 21 20 19 25 25 H 1.09003 * 109.47335 * 299.99547 * 1 2 3 26 26 H 1.09002 * 109.47311 * 59.99668 * 1 2 3 27 27 H 1.09002 * 109.46959 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46886 * 240.00642 * 2 1 3 29 29 H 1.08999 * 109.47559 * 119.99873 * 2 1 3 30 30 H 1.08991 * 109.47463 * 204.99792 * 4 3 2 31 31 H 1.09000 * 109.46878 * 325.00020 * 4 3 2 32 32 H 0.97005 * 120.00079 * 179.97438 * 8 7 5 33 33 H 1.09005 * 108.27544 * 29.34860 * 17 16 13 34 34 H 1.08999 * 108.28335 * 146.22657 * 17 16 13 35 35 H 1.09001 * 109.31029 * 198.27116 * 18 17 16 36 36 H 1.08997 * 109.16225 * 78.87071 * 18 17 16 37 37 H 1.09004 * 110.11834 * 339.07575 * 20 19 18 38 38 H 1.08995 * 110.12392 * 217.36592 * 20 19 18 39 39 H 1.08999 * 109.86811 * 298.48926 * 24 21 20 40 40 H 1.09003 * 109.93080 * 177.47535 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1582 2.1087 1.2639 5 6 3.4948 1.7888 1.8823 6 1 4.1723 1.1117 1.3835 7 6 3.8524 2.3606 3.0849 8 7 3.0275 3.1855 3.6920 9 14 5.5094 1.9646 3.8510 10 1 6.5224 2.9383 3.3705 11 1 5.4039 2.0492 5.3299 12 1 5.9192 0.5913 3.4619 13 16 2.4185 2.1180 -1.4280 14 8 3.3332 3.1554 -1.1018 15 8 2.7200 1.0763 -2.3463 16 7 1.0520 2.8611 -1.9961 17 6 0.1501 2.1588 -2.8678 18 6 0.4058 2.3296 -4.3755 19 8 0.7382 3.7060 -4.6861 20 6 0.0098 4.6662 -3.9793 21 6 0.9000 5.1026 -2.8181 22 9 0.5954 6.4291 -2.4947 23 9 2.2348 5.0393 -3.2326 24 6 0.7426 4.2769 -1.6130 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8932 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0921 3.1802 1.0757 31 1 1.3617 1.8097 1.9453 32 1 3.2791 3.5874 4.5383 33 1 0.2079 1.0955 -2.6346 34 1 -0.8642 2.4960 -2.6541 35 1 -0.4893 2.0433 -4.9276 36 1 1.2326 1.6849 -4.6734 37 1 -0.9148 4.2311 -3.5999 38 1 -0.2114 5.5177 -4.6227 39 1 -0.2820 4.3464 -1.2476 40 1 1.4348 4.6115 -0.8403 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341885708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:19 Heat of formation + Delta-G solvation = -226.515132 kcal Electronic energy + Delta-G solvation = -29094.932130 eV Core-core repulsion = 24707.230731 eV Total energy + Delta-G solvation = -4387.701399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.110 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.12098 -47.97332 -40.21034 -38.45066 -37.72492 -36.94067 -36.82770 -34.74059 -33.00688 -31.54184 -29.22540 -28.51382 -28.09645 -24.97017 -23.48685 -23.18007 -22.71466 -20.08652 -19.32219 -19.06207 -18.71406 -18.41514 -17.94580 -17.84017 -17.21878 -16.75650 -16.52755 -16.22912 -15.96853 -15.48598 -15.21358 -14.81977 -14.72119 -14.65476 -14.37138 -14.28051 -14.10763 -13.80662 -13.65907 -13.54546 -13.35853 -13.32353 -13.10232 -12.93852 -12.83532 -12.79125 -12.68456 -12.43581 -12.25126 -12.15945 -11.77897 -11.74131 -11.58972 -10.76095 -10.62050 -10.36087 -9.84551 -8.23159 -6.34182 -0.52952 1.36248 1.39835 1.48127 1.79837 2.33315 2.42484 2.66273 2.81436 3.07432 3.09391 3.15676 3.30297 3.49627 3.78094 3.83272 3.98871 4.08454 4.23382 4.35008 4.41752 4.46564 4.46828 4.56083 4.57297 4.66571 4.73598 4.99995 5.03168 5.12838 5.15674 5.35455 5.43127 5.54164 5.69103 5.93868 6.08828 6.10036 6.73394 7.34569 8.84203 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.005097 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.456412 B = 5492.006673 C = 6241.858337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.104 3.896 3 N -0.993 5.993 4 C 0.276 3.724 5 C -0.551 4.551 6 H 0.048 0.952 7 C 0.015 3.985 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.282 1.282 11 H -0.271 1.271 12 H -0.266 1.266 13 S 2.787 3.213 14 O -1.005 7.005 15 O -0.999 6.999 16 N -0.990 5.990 17 C 0.065 3.935 18 C 0.028 3.972 19 O -0.388 6.388 20 C 0.039 3.961 21 C 0.240 3.760 22 F -0.205 7.205 23 F -0.216 7.216 24 C 0.073 3.927 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.014 0.986 31 H 0.034 0.966 32 H 0.268 0.732 33 H 0.102 0.898 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.083 0.917 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.157 0.843 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.383 -2.319 -13.909 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.021 4.021 3 N -0.834 5.834 4 C 0.152 3.848 5 C -0.590 4.590 6 H 0.066 0.934 7 C -0.184 4.184 8 N -0.560 5.560 9 Si 0.776 3.224 10 H -0.208 1.208 11 H -0.196 1.196 12 H -0.190 1.190 13 S 2.796 3.204 14 O -0.989 6.989 15 O -0.982 6.982 16 N -0.829 5.829 17 C -0.061 4.061 18 C -0.049 4.049 19 O -0.305 6.305 20 C -0.039 4.039 21 C 0.202 3.798 22 F -0.186 7.186 23 F -0.197 7.197 24 C -0.053 4.053 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.101 0.899 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.175 0.825 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.383 -2.183 -14.291 20.393 hybrid contribution 1.143 0.259 1.194 1.673 sum -13.239 -1.924 -13.097 18.722 Atomic orbital electron populations 1.22229 0.93740 1.03619 1.02586 1.21461 0.96046 0.81150 1.03451 1.57673 1.81427 1.22718 1.21604 1.18569 0.95789 0.90174 0.80226 1.21828 1.03458 1.27737 1.06025 0.93401 1.25675 1.00636 0.94717 0.97411 1.69982 1.37545 1.30847 1.17673 0.85663 0.79947 0.78848 0.77931 1.20788 1.19597 1.19023 1.01666 0.73527 0.72515 0.72657 1.93574 1.61580 1.59106 1.84638 1.93490 1.83381 1.57880 1.63488 1.57904 1.43790 1.21019 1.60192 1.21871 0.95711 0.98785 0.89696 1.24178 1.04089 0.81526 0.95082 1.87744 1.63472 1.15961 1.63373 1.23204 0.94281 0.94904 0.91532 1.21856 0.80565 0.79443 0.97973 1.93009 1.92949 1.38409 1.94245 1.93028 1.38312 1.96251 1.92123 1.22055 1.07806 0.79857 0.95560 0.92867 0.91247 0.89221 0.89765 0.90912 0.96769 0.94829 0.92330 0.87964 0.85302 0.86026 0.89901 0.85165 0.85528 0.82545 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 10.24 71.98 0.74 -2.90 16 2 C 0.10 3.31 6.40 86.38 0.55 3.87 16 3 N -0.99 -39.83 2.82 -519.85 -1.47 -41.30 16 4 C 0.28 13.67 5.10 85.63 0.44 14.10 16 5 C -0.55 -31.29 9.38 25.60 0.24 -31.05 16 6 H 0.05 2.76 7.81 -2.91 -0.02 2.73 16 7 C 0.02 0.88 5.46 84.66 0.46 1.34 16 8 N -0.92 -53.60 13.29 21.45 0.28 -53.32 16 9 Si 0.95 45.01 29.54 68.60 2.03 47.04 16 10 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 13 S 2.79 111.98 6.01 -56.49 -0.34 111.64 16 14 O -1.01 -51.44 15.88 -128.00 -2.03 -53.47 16 15 O -1.00 -40.55 15.72 -128.00 -2.01 -42.56 16 16 N -0.99 -27.58 2.96 -522.14 -1.54 -29.12 16 17 C 0.07 1.13 4.33 87.18 0.38 1.51 16 18 C 0.03 0.49 7.27 72.28 0.53 1.02 16 19 O -0.39 -8.87 9.55 -137.95 -1.32 -10.19 16 20 C 0.04 0.68 6.09 71.88 0.44 1.12 16 21 C 0.24 6.40 1.91 28.60 0.05 6.45 16 22 F -0.20 -5.50 16.91 44.97 0.76 -4.74 16 23 F -0.22 -8.09 15.99 44.97 0.72 -7.37 16 24 C 0.07 1.92 5.36 83.83 0.45 2.37 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 1.22 6.01 -2.39 -0.01 1.21 16 27 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 2.52 6.91 -2.39 -0.02 2.50 16 29 H 0.07 2.49 8.11 -2.39 -0.02 2.47 16 30 H 0.01 0.76 7.61 -2.39 -0.02 0.75 16 31 H 0.03 1.67 8.11 -2.39 -0.02 1.65 16 32 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 33 H 0.10 1.64 6.13 -2.38 -0.01 1.63 16 34 H 0.13 1.01 7.08 -2.39 -0.02 0.99 16 35 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.13 1.07 6.34 -2.39 -0.02 1.05 16 38 H 0.13 1.77 8.12 -2.39 -0.02 1.75 16 39 H 0.16 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.09 3.07 7.25 -2.39 -0.02 3.05 16 Total: -1.00 -79.91 340.01 0.41 -79.50 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 1.06 Total: 6.07 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 4.27 Total: -2.18 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -2.73 Total: -123.74 kcal Atomic # 8 Polarization: -100.85 SS G_CDS: -5.36 Total: -106.21 kcal Atomic # 9 Polarization: -13.59 SS G_CDS: 1.48 Total: -12.11 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 111.98 SS G_CDS: -0.34 Total: 111.64 kcal Total: -79.91 0.41 -79.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341885708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.011 kcal (2) G-P(sol) polarization free energy of solvation -79.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds