Wall clock time and date at job start Tue Mar 31 2020 04:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.46660 * 2 1 4 4 C 1.53000 * 109.47117 * 240.00809 * 2 1 3 5 5 N 1.46500 * 109.47020 * 184.89345 * 4 2 1 6 6 C 1.34783 * 120.00031 * 183.36046 * 5 4 2 7 7 O 1.21284 * 119.99590 * 359.97438 * 6 5 4 8 8 C 1.50692 * 119.99962 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.47126 * 180.02562 * 8 6 5 10 10 C 1.76201 * 100.00240 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99782 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00248 * 180.02562 * 10 9 8 13 13 N 1.31633 * 119.99823 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00059 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47461 * 59.99696 * 14 12 10 16 16 H 1.48499 * 109.47129 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47310 * 299.99411 * 14 12 10 18 18 N 1.46893 * 109.47597 * 120.00007 * 2 1 3 19 19 C 1.46901 * 111.00159 * 306.64617 * 18 2 1 20 20 C 1.39118 * 110.99623 * 70.59570 * 18 2 1 21 21 N 1.32563 * 120.11160 * 333.91012 * 20 18 2 22 22 C 1.32309 * 119.94638 * 179.97438 * 21 20 18 23 23 C 1.38062 * 120.16442 * 359.97438 * 22 21 20 24 24 N 1.32349 * 120.22428 * 0.02562 * 23 22 21 25 25 C 1.32078 * 120.04906 * 359.97438 * 24 23 22 26 26 F 1.35102 * 120.07940 * 180.02562 * 25 24 23 27 27 H 1.09010 * 109.46917 * 179.28724 * 1 2 3 28 28 H 1.09002 * 109.47053 * 299.28278 * 1 2 3 29 29 H 1.09002 * 109.47794 * 59.28912 * 1 2 3 30 30 H 1.08999 * 109.46739 * 304.88705 * 4 2 1 31 31 H 1.08993 * 109.47577 * 64.89035 * 4 2 1 32 32 H 0.97002 * 120.00442 * 3.36053 * 5 4 2 33 33 H 1.08999 * 109.47400 * 300.00010 * 8 6 5 34 34 H 1.09006 * 109.47622 * 60.00119 * 8 6 5 35 35 H 0.96998 * 119.99784 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.46734 * 186.94590 * 19 18 2 37 37 H 1.08996 * 109.46695 * 306.94650 * 19 18 2 38 38 H 1.08994 * 109.47141 * 66.94738 * 19 18 2 39 39 H 1.07997 * 119.91820 * 180.02562 * 22 21 20 40 40 H 1.07996 * 119.89171 * 180.27880 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 3.5002 -0.8239 -1.1919 6 6 4.1788 -1.3648 -2.2232 7 8 3.5804 -1.7667 -3.1986 8 6 5.6809 -1.4701 -2.1643 9 16 6.2924 -2.2334 -3.6873 10 6 8.0230 -2.2330 -3.3564 11 1 8.3946 -1.8320 -2.4250 12 6 8.9089 -2.7472 -4.2931 13 7 8.4560 -3.2356 -5.4285 14 14 10.7436 -2.7461 -3.9425 15 1 11.0142 -3.5419 -2.7183 16 1 11.4676 -3.3457 -5.0921 17 1 11.2078 -1.3504 -3.7383 18 7 2.0197 -0.6924 1.1993 19 6 1.4235 -0.1242 2.4157 20 6 1.7791 -2.0603 1.1184 21 7 0.7794 -2.5170 0.3772 22 6 0.5539 -3.8185 0.3021 23 6 1.3575 -4.7029 0.9936 24 7 2.3573 -4.2542 1.7357 25 6 2.5903 -2.9566 1.8167 26 9 3.6111 -2.4980 2.5736 27 1 -0.3633 -1.0277 -0.0128 28 1 -0.3633 0.5027 0.8964 29 1 -0.3635 0.5248 -0.8835 30 1 1.6069 -1.7203 -1.2943 31 1 1.7500 -0.1591 -2.1371 32 1 3.9788 -0.5028 -0.4116 33 1 6.1111 -0.4741 -2.0595 34 1 5.9691 -2.0822 -1.3096 35 1 9.0751 -3.5952 -6.0829 36 1 1.8934 -0.5694 3.2927 37 1 1.5805 0.9544 2.4275 38 1 0.3544 -0.3359 2.4294 39 1 -0.2604 -4.1901 -0.3022 40 1 1.1722 -5.7646 0.9256 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113498342.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:12 Heat of formation + Delta-G solvation = 4.539448 kcal Electronic energy + Delta-G solvation = -25953.285792 eV Core-core repulsion = 22038.665647 eV Total energy + Delta-G solvation = -3914.620145 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.25357 -41.79807 -39.40200 -38.37803 -34.45676 -34.23123 -32.39182 -31.96848 -30.56394 -29.22940 -27.09552 -25.60738 -25.24036 -24.86347 -23.91683 -21.15143 -20.19976 -18.83944 -18.33567 -17.90179 -17.15319 -16.87620 -16.17428 -15.97451 -15.72234 -15.35043 -14.86871 -14.77291 -14.75723 -14.31686 -14.10587 -14.01692 -13.70218 -13.50601 -13.01873 -12.91746 -12.66419 -12.44618 -12.41848 -12.24694 -11.83959 -11.60313 -11.32196 -11.10066 -11.00503 -11.00357 -10.73114 -10.02112 -9.78509 -9.50732 -9.34851 -9.02509 -8.85173 -8.70177 -8.20078 -6.45940 -6.17938 -3.88189 0.24571 0.57142 2.71522 3.02621 3.11304 3.17421 3.26741 3.28449 3.30898 3.37521 3.69969 3.81708 3.87643 4.24438 4.40850 4.55477 4.71647 4.77637 4.84142 4.97334 5.02353 5.13218 5.17114 5.23366 5.34089 5.40788 5.53304 5.56819 5.69383 5.72108 5.90609 5.95497 6.09858 6.18462 6.20620 6.55337 6.72065 6.74099 7.18044 7.63283 7.82120 8.39092 8.68637 9.27319 10.89525 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.003131 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.380800 B = 8940.836269 C = 9349.327609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.078 3.922 3 H 0.099 0.901 4 C 0.119 3.881 5 N -0.734 5.734 6 C 0.530 3.470 7 O -0.522 6.522 8 C -0.152 4.152 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.869 5.869 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.474 5.474 19 C 0.025 3.975 20 C 0.246 3.754 21 N -0.435 5.435 22 C 0.054 3.946 23 C 0.073 3.927 24 N -0.456 5.456 25 C 0.275 3.725 26 F -0.092 7.092 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.403 0.597 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.268 0.732 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.045 0.955 39 H 0.180 0.820 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.836 4.356 17.845 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.030 4.030 3 H 0.117 0.883 4 C -0.005 4.005 5 N -0.389 5.389 6 C 0.316 3.684 7 O -0.396 6.396 8 C -0.303 4.303 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.504 5.504 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 N -0.195 5.195 19 C -0.121 4.121 20 C 0.010 3.990 21 N -0.154 5.154 22 C -0.106 4.106 23 C -0.086 4.086 24 N -0.176 5.176 25 C 0.115 3.885 26 F -0.071 7.071 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.237 0.763 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.197 0.803 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -20.237 3.742 16.107 26.134 hybrid contribution 1.627 0.576 1.763 2.467 sum -18.610 4.318 17.870 26.159 Atomic orbital electron populations 1.22732 0.94620 1.05793 1.02071 1.22045 0.95231 0.98063 0.87650 0.88287 1.21569 0.81037 1.01630 0.96311 1.45962 1.06798 1.64873 1.21246 1.20316 0.89482 0.76517 0.82062 1.90688 1.70217 1.46770 1.31950 1.23515 0.93645 1.05468 1.07636 1.85341 1.04428 1.77981 1.15638 1.22841 0.91538 1.47274 1.06696 0.90984 1.24981 0.99561 0.94543 0.94434 1.70013 1.35426 1.37854 1.07110 0.86228 0.82784 0.78552 0.77975 1.19923 1.20818 1.19921 1.59985 1.56274 0.97985 1.05227 1.22531 0.97983 1.01304 0.90242 1.20575 0.91340 0.92163 0.94879 1.68733 1.14280 1.16152 1.16238 1.23770 1.00286 0.88644 0.97909 1.23538 0.90109 1.02457 0.92505 1.67809 1.18359 1.13340 1.18047 1.18671 0.87436 0.88681 0.93700 1.91674 1.55409 1.87440 1.72598 0.88114 0.92512 0.91770 0.90470 0.90732 0.76281 0.89230 0.89441 0.92175 0.90593 0.89382 0.93606 0.80255 0.80140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.46 8.40 37.16 0.31 -1.15 16 2 C 0.08 0.70 2.67 -67.72 -0.18 0.51 16 3 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 4 C 0.12 1.51 4.59 -4.04 -0.02 1.49 16 5 N -0.73 -10.88 5.31 -60.30 -0.32 -11.20 16 6 C 0.53 10.54 7.85 -10.99 -0.09 10.46 16 7 O -0.52 -12.34 15.86 5.55 0.09 -12.25 16 8 C -0.15 -3.26 6.16 36.00 0.22 -3.04 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16 10 C -0.54 -15.68 9.50 30.94 0.29 -15.38 16 11 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 12 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16 13 N -0.87 -26.65 13.22 55.49 0.73 -25.91 16 14 Si 0.92 21.86 29.55 -169.99 -5.02 16.83 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 N -0.47 -4.37 4.10 -173.21 -0.71 -5.08 16 19 C 0.03 0.17 8.69 60.07 0.52 0.69 16 20 C 0.25 2.63 4.73 -154.59 -0.73 1.90 16 21 N -0.44 -4.27 4.63 -12.17 -0.06 -4.32 16 22 C 0.05 0.43 11.21 -17.41 -0.20 0.23 16 23 C 0.07 0.63 11.21 -17.39 -0.19 0.43 16 24 N -0.46 -5.49 10.50 -13.24 -0.14 -5.63 16 25 C 0.28 3.37 8.42 -16.93 -0.14 3.23 16 26 F -0.09 -1.18 17.12 2.25 0.04 -1.14 16 27 H 0.10 0.86 5.27 -51.92 -0.27 0.59 16 28 H 0.06 0.36 6.44 -51.93 -0.33 0.02 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 1.09 5.63 -51.93 -0.29 0.80 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.40 5.24 8.09 -40.82 -0.33 4.91 16 33 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 34 H 0.09 1.79 8.14 -51.91 -0.42 1.37 16 35 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.44 8.11 -51.93 -0.42 0.02 16 38 H 0.05 0.28 6.62 -51.93 -0.34 -0.06 16 39 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -36.64 352.33 -7.51 -44.15 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.92 Total: 1.72 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -0.30 Total: 1.43 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.49 Total: -52.14 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.64 -7.51 -44.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113498342.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.692 kcal (2) G-P(sol) polarization free energy of solvation -36.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds