Wall clock time and date at job start Tue Mar 31 2020 04:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.46660 * 2 1 4 4 C 1.53000 * 109.47117 * 240.00809 * 2 1 3 5 5 N 1.46500 * 109.47020 * 184.89345 * 4 2 1 6 6 C 1.34783 * 120.00031 * 183.36046 * 5 4 2 7 7 O 1.21284 * 119.99590 * 359.97438 * 6 5 4 8 8 C 1.50692 * 119.99962 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.47126 * 180.02562 * 8 6 5 10 10 C 1.76201 * 100.00240 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99782 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00248 * 180.02562 * 10 9 8 13 13 N 1.31633 * 119.99823 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00059 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47461 * 59.99696 * 14 12 10 16 16 H 1.48499 * 109.47129 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47310 * 299.99411 * 14 12 10 18 18 N 1.46893 * 109.47597 * 120.00007 * 2 1 3 19 19 C 1.46901 * 111.00159 * 306.64617 * 18 2 1 20 20 C 1.39118 * 110.99623 * 70.59570 * 18 2 1 21 21 N 1.32563 * 120.11160 * 333.91012 * 20 18 2 22 22 C 1.32309 * 119.94638 * 179.97438 * 21 20 18 23 23 C 1.38062 * 120.16442 * 359.97438 * 22 21 20 24 24 N 1.32349 * 120.22428 * 0.02562 * 23 22 21 25 25 C 1.32078 * 120.04906 * 359.97438 * 24 23 22 26 26 F 1.35102 * 120.07940 * 180.02562 * 25 24 23 27 27 H 1.09010 * 109.46917 * 179.28724 * 1 2 3 28 28 H 1.09002 * 109.47053 * 299.28278 * 1 2 3 29 29 H 1.09002 * 109.47794 * 59.28912 * 1 2 3 30 30 H 1.08999 * 109.46739 * 304.88705 * 4 2 1 31 31 H 1.08993 * 109.47577 * 64.89035 * 4 2 1 32 32 H 0.97002 * 120.00442 * 3.36053 * 5 4 2 33 33 H 1.08999 * 109.47400 * 300.00010 * 8 6 5 34 34 H 1.09006 * 109.47622 * 60.00119 * 8 6 5 35 35 H 0.96998 * 119.99784 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.46734 * 186.94590 * 19 18 2 37 37 H 1.08996 * 109.46695 * 306.94650 * 19 18 2 38 38 H 1.08994 * 109.47141 * 66.94738 * 19 18 2 39 39 H 1.07997 * 119.91820 * 180.02562 * 22 21 20 40 40 H 1.07996 * 119.89171 * 180.27880 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 3.5002 -0.8239 -1.1919 6 6 4.1788 -1.3648 -2.2232 7 8 3.5804 -1.7667 -3.1986 8 6 5.6809 -1.4701 -2.1643 9 16 6.2924 -2.2334 -3.6873 10 6 8.0230 -2.2330 -3.3564 11 1 8.3946 -1.8320 -2.4250 12 6 8.9089 -2.7472 -4.2931 13 7 8.4560 -3.2356 -5.4285 14 14 10.7436 -2.7461 -3.9425 15 1 11.0142 -3.5419 -2.7183 16 1 11.4676 -3.3457 -5.0921 17 1 11.2078 -1.3504 -3.7383 18 7 2.0197 -0.6924 1.1993 19 6 1.4235 -0.1242 2.4157 20 6 1.7791 -2.0603 1.1184 21 7 0.7794 -2.5170 0.3772 22 6 0.5539 -3.8185 0.3021 23 6 1.3575 -4.7029 0.9936 24 7 2.3573 -4.2542 1.7357 25 6 2.5903 -2.9566 1.8167 26 9 3.6111 -2.4980 2.5736 27 1 -0.3633 -1.0277 -0.0128 28 1 -0.3633 0.5027 0.8964 29 1 -0.3635 0.5248 -0.8835 30 1 1.6069 -1.7203 -1.2943 31 1 1.7500 -0.1591 -2.1371 32 1 3.9788 -0.5028 -0.4116 33 1 6.1111 -0.4741 -2.0595 34 1 5.9691 -2.0822 -1.3096 35 1 9.0751 -3.5952 -6.0829 36 1 1.8934 -0.5694 3.2927 37 1 1.5805 0.9544 2.4275 38 1 0.3544 -0.3359 2.4294 39 1 -0.2604 -4.1901 -0.3022 40 1 1.1722 -5.7646 0.9256 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113498342.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:11 Heat of formation + Delta-G solvation = -22.524764 kcal Electronic energy + Delta-G solvation = -25954.459384 eV Core-core repulsion = 22038.665647 eV Total energy + Delta-G solvation = -3915.793737 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.12262 -42.53514 -40.68754 -39.39190 -35.64744 -35.04930 -34.60285 -32.89186 -31.46058 -30.57273 -27.91713 -27.61513 -26.24341 -25.66236 -24.67759 -21.95884 -21.67585 -19.87342 -19.59052 -19.13615 -18.20740 -17.74725 -17.67083 -16.95530 -16.89266 -16.82216 -16.18039 -16.04372 -15.83103 -15.58226 -15.05120 -14.91826 -14.67851 -14.57958 -14.39486 -14.26826 -13.93300 -13.41868 -13.19232 -13.12367 -13.09476 -12.88612 -12.82942 -12.65775 -12.42958 -12.14286 -11.85442 -11.74589 -11.14681 -11.02186 -10.69329 -10.32693 -10.30105 -10.03676 -9.47725 -8.69434 -8.36300 -6.15019 -0.47553 -0.17239 1.24275 1.42824 1.44390 1.54958 1.56281 1.99111 2.24640 2.27173 2.38383 2.59858 2.97636 3.03887 3.19077 3.30117 3.60476 3.87122 3.94825 4.06556 4.18246 4.22369 4.28052 4.34459 4.43016 4.44587 4.49714 4.62513 4.77845 4.84700 4.88506 5.02308 5.07567 5.36666 5.39574 5.47604 5.57480 5.87489 6.03090 6.17832 6.46025 6.46641 7.04653 7.19130 8.72859 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.003131 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.380800 B = 8940.836269 C = 9349.327609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.087 3.913 3 H 0.117 0.883 4 C 0.117 3.883 5 N -0.709 5.709 6 C 0.532 3.468 7 O -0.565 6.565 8 C -0.129 4.129 9 S -0.144 6.144 10 C -0.551 4.551 11 H 0.080 0.920 12 C 0.016 3.984 13 N -0.910 5.910 14 Si 0.998 3.002 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.261 1.261 18 N -0.482 5.482 19 C 0.026 3.974 20 C 0.242 3.758 21 N -0.443 5.443 22 C 0.061 3.939 23 C 0.070 3.930 24 N -0.486 5.486 25 C 0.243 3.757 26 F -0.106 7.106 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.414 0.586 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.272 0.728 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.052 0.948 39 H 0.217 0.783 40 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.270 5.275 19.357 28.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.021 4.021 3 H 0.135 0.865 4 C -0.007 4.007 5 N -0.362 5.362 6 C 0.318 3.682 7 O -0.443 6.443 8 C -0.280 4.280 9 S 0.083 5.917 10 C -0.699 4.699 11 H 0.098 0.902 12 C -0.189 4.189 13 N -0.547 5.547 14 Si 0.819 3.181 15 H -0.188 1.188 16 H -0.201 1.201 17 H -0.186 1.186 18 N -0.203 5.203 19 C -0.119 4.119 20 C 0.008 3.992 21 N -0.162 5.162 22 C -0.100 4.100 23 C -0.090 4.090 24 N -0.206 5.206 25 C 0.084 3.916 26 F -0.085 7.085 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.251 0.749 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.127 0.873 38 H 0.070 0.930 39 H 0.233 0.767 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -20.685 4.713 17.686 27.620 hybrid contribution 1.595 0.257 1.337 2.097 sum -19.090 4.971 19.024 27.405 Atomic orbital electron populations 1.22663 0.93202 1.05543 1.03148 1.22012 0.96182 0.98070 0.85799 0.86501 1.21740 0.79027 1.01572 0.98331 1.45751 1.07937 1.62615 1.19920 1.20036 0.88811 0.76785 0.82597 1.90674 1.70663 1.49121 1.33885 1.23350 0.95001 1.05798 1.03898 1.85471 1.05679 1.79544 1.20980 1.23176 0.91714 1.47700 1.07273 0.90173 1.26114 1.05219 0.93627 0.93935 1.70171 1.37471 1.38715 1.08295 0.85012 0.75628 0.79232 0.78186 1.18817 1.20095 1.18567 1.60007 1.56791 0.97441 1.06062 1.22617 0.98118 1.02297 0.88892 1.20637 0.91243 0.92659 0.94667 1.68831 1.14099 1.17106 1.16191 1.24446 1.00485 0.88048 0.97003 1.24177 0.89090 1.04226 0.91464 1.67780 1.19833 1.13676 1.19306 1.18889 0.88235 0.89291 0.95189 1.91624 1.56089 1.87618 1.73141 0.89011 0.90741 0.91359 0.91616 0.91235 0.74915 0.87299 0.88352 0.91892 0.90990 0.87346 0.92973 0.76651 0.76921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 8.40 71.98 0.60 -1.73 16 2 C 0.09 1.36 2.67 44.92 0.12 1.48 16 3 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 4 C 0.12 2.82 4.59 86.38 0.40 3.21 16 5 N -0.71 -20.24 5.31 -463.07 -2.46 -22.70 16 6 C 0.53 21.09 7.85 87.65 0.69 21.78 16 7 O -0.56 -27.20 15.86 -3.04 -0.05 -27.25 16 8 C -0.13 -5.53 6.16 71.23 0.44 -5.09 16 9 S -0.14 -8.27 20.57 -56.49 -1.16 -9.43 16 10 C -0.55 -32.47 9.50 67.95 0.65 -31.83 16 11 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 12 C 0.02 0.93 5.49 84.86 0.47 1.40 16 13 N -0.91 -56.75 13.22 21.65 0.29 -56.46 16 14 Si 1.00 44.52 29.55 68.60 2.03 46.54 16 15 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 16 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 18 N -0.48 -8.04 4.10 -701.90 -2.88 -10.92 16 19 C 0.03 0.29 8.69 127.69 1.11 1.39 16 20 C 0.24 4.93 4.73 133.09 0.63 5.56 16 21 N -0.44 -8.03 4.63 -192.42 -0.89 -8.92 16 22 C 0.06 0.85 11.21 84.58 0.95 1.80 16 23 C 0.07 1.10 11.21 84.57 0.95 2.05 16 24 N -0.49 -11.58 10.50 -195.79 -2.06 -13.64 16 25 C 0.24 5.92 8.42 84.99 0.72 6.64 16 26 F -0.11 -2.75 17.12 44.97 0.77 -1.98 16 27 H 0.09 1.37 5.27 -2.38 -0.01 1.36 16 28 H 0.07 0.69 6.44 -2.39 -0.02 0.68 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 1.79 5.63 -2.39 -0.01 1.78 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.41 10.09 8.09 -92.71 -0.75 9.34 16 33 H 0.11 4.21 8.14 -2.40 -0.02 4.19 16 34 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 35 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.11 0.75 8.11 -2.39 -0.02 0.73 16 38 H 0.05 0.52 6.62 -2.39 -0.02 0.50 16 39 H 0.22 1.25 8.06 -2.91 -0.02 1.23 16 40 H 0.21 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -82.14 352.33 1.63 -80.51 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.34 Total: 17.59 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 7.71 Total: 6.66 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -8.00 Total: -112.64 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.05 Total: -27.25 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.77 Total: -1.98 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.43 kcal Total: -82.14 1.63 -80.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113498342.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.983 kcal (2) G-P(sol) polarization free energy of solvation -82.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds