Wall clock time and date at job start Tue Mar 31 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00353 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00445 * 3 2 1 7 7 C 1.38798 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99738 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47234 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99701 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00005 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99680 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.46275 * 324.97445 * 14 13 11 16 16 C 1.53041 * 109.45902 * 84.93204 * 14 13 11 17 17 C 1.53194 * 109.31312 * 181.38363 * 16 14 13 18 18 N 1.46929 * 108.77475 * 305.36362 * 17 16 14 19 19 C 1.34778 * 120.62722 * 233.58332 * 18 17 16 20 20 O 1.21284 * 119.99304 * 180.02562 * 19 18 17 21 21 C 1.50695 * 120.00383 * 0.02655 * 19 18 17 22 22 C 1.53005 * 117.49789 * 248.74394 * 21 19 18 23 23 C 1.52997 * 117.49795 * 180.08381 * 21 19 18 24 24 C 1.46923 * 118.73753 * 53.60753 * 18 17 16 25 25 C 1.53044 * 109.46181 * 204.99764 * 14 13 11 26 26 H 1.08999 * 109.49337 * 58.66231 * 25 14 13 27 27 O 1.42903 * 109.49676 * 298.60254 * 25 14 13 28 28 H 0.97005 * 119.99723 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47255 * 299.99975 * 10 9 7 30 30 H 1.09001 * 109.46783 * 60.00283 * 10 9 7 31 31 H 0.96995 * 120.00238 * 359.97438 * 13 11 10 32 32 H 1.09002 * 109.49653 * 301.33352 * 16 14 13 33 33 H 1.09007 * 109.49994 * 61.43431 * 16 14 13 34 34 H 1.08999 * 109.58911 * 185.57710 * 17 16 14 35 35 H 1.09000 * 109.58899 * 65.15075 * 17 16 14 36 36 H 1.09002 * 115.54906 * 34.41574 * 21 19 18 37 37 H 1.08991 * 117.49660 * 359.97438 * 22 21 19 38 38 H 1.09002 * 117.49513 * 145.02049 * 22 21 19 39 39 H 1.08999 * 117.49884 * 214.97592 * 23 21 19 40 40 H 1.09004 * 117.50399 * 0.02562 * 23 21 19 41 41 H 1.09000 * 109.58764 * 186.60150 * 24 18 17 42 42 H 1.09004 * 109.58207 * 66.18081 * 24 18 17 43 43 H 0.96701 * 114.00078 * 179.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6966 -1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0021 11 6 1.9876 -5.3027 -0.0017 12 8 0.7913 -5.5023 -0.0009 13 7 2.8444 -6.3430 -0.0022 14 6 2.3307 -7.7150 -0.0024 15 1 1.4153 -7.7601 0.5877 16 6 2.0321 -8.1474 -1.4397 17 6 1.4628 -9.5696 -1.4331 18 7 2.3982 -10.4501 -0.7200 19 6 2.8577 -11.5769 -1.2994 20 8 3.6292 -12.2957 -0.7001 21 6 2.4128 -11.9438 -2.6917 22 6 1.5065 -13.1670 -2.8444 23 6 2.9683 -13.2362 -3.2932 24 6 2.8228 -10.0791 0.6367 25 6 3.3768 -8.6513 0.6069 26 1 3.6062 -8.3287 1.6224 27 8 4.5662 -8.6169 -0.1845 28 1 -0.4850 -0.8401 0.0004 29 1 3.1239 -3.7308 -0.8925 30 1 3.1252 -3.7316 0.8875 31 1 3.8011 -6.1834 -0.0032 32 1 1.3043 -7.4663 -1.8808 33 1 2.9518 -8.1265 -2.0245 34 1 1.3411 -9.9193 -2.4582 35 1 0.4978 -9.5746 -0.9262 36 1 2.2450 -11.1054 -3.3678 37 1 1.2324 -13.7065 -1.9380 38 1 0.7426 -13.1334 -3.6213 39 1 3.1655 -13.2483 -4.3651 40 1 3.6553 -13.8214 -2.6818 41 1 3.5985 -10.7650 0.9772 42 1 1.9687 -10.1256 1.3124 43 1 5.2740 -9.1880 0.1441 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001685456385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:34 Heat of formation + Delta-G solvation = -97.482633 kcal Electronic energy + Delta-G solvation = -25636.855107 eV Core-core repulsion = 21808.978507 eV Total energy + Delta-G solvation = -3827.876600 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94697 -39.61458 -38.28191 -36.44750 -35.86823 -34.50903 -32.54515 -31.56335 -30.76707 -29.04101 -25.98278 -24.85259 -24.13038 -23.36006 -22.83631 -20.92703 -20.38799 -19.40842 -18.36837 -18.13872 -17.30050 -16.63088 -16.50778 -16.03296 -15.88899 -15.19288 -15.14342 -14.68696 -14.52165 -14.43019 -14.06058 -13.85588 -13.42682 -13.25461 -13.12936 -12.71921 -12.43196 -12.38046 -12.27250 -12.16919 -11.97031 -11.80131 -11.55548 -11.02140 -10.97406 -10.93114 -10.89861 -10.61862 -10.18605 -10.09318 -9.61452 -9.57483 -9.06127 -9.00489 -8.95777 -8.24872 -6.69235 -6.63934 -4.01896 2.12359 2.51343 2.86277 2.93135 3.33375 3.36835 3.42294 3.51314 3.57537 3.83421 3.99963 4.23545 4.27893 4.35833 4.45296 4.46573 4.47546 4.64947 4.80395 4.93506 4.94857 5.14864 5.16277 5.17964 5.20690 5.22355 5.33521 5.34948 5.41656 5.52707 5.54658 5.68051 5.71198 5.74815 6.00150 6.04788 6.10484 6.50650 6.97843 7.22705 7.61501 7.80919 7.90414 8.46570 8.48369 9.25148 10.79955 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.031767 B = 0.002171 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.206187 B =12892.590203 C =13206.152142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.035 3.965 3 Si 1.084 2.916 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.066 0.934 9 S -0.115 6.115 10 C -0.131 4.131 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.728 5.728 14 C 0.159 3.841 15 H 0.100 0.900 16 C -0.145 4.145 17 C 0.110 3.890 18 N -0.600 5.600 19 C 0.550 3.450 20 O -0.547 6.547 21 C -0.197 4.197 22 C -0.152 4.152 23 C -0.148 4.148 24 C 0.082 3.918 25 C 0.084 3.916 26 H 0.075 0.925 27 O -0.555 6.555 28 H 0.278 0.722 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.404 0.596 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.127 0.873 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.270 -25.575 -3.220 26.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.175 4.175 3 Si 0.910 3.090 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.756 4.756 8 H 0.084 0.916 9 S 0.111 5.889 10 C -0.282 4.282 11 C 0.318 3.682 12 O -0.394 6.394 13 N -0.382 5.382 14 C 0.053 3.947 15 H 0.118 0.882 16 C -0.184 4.184 17 C -0.013 4.013 18 N -0.333 5.333 19 C 0.339 3.661 20 O -0.425 6.425 21 C -0.218 4.218 22 C -0.189 4.189 23 C -0.185 4.185 24 C -0.041 4.041 25 C 0.024 3.976 26 H 0.093 0.907 27 O -0.360 6.360 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.239 0.761 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.144 0.856 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.099 0.901 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.100 -24.210 -3.232 24.952 hybrid contribution 2.516 -1.464 0.321 2.929 sum 7.616 -25.674 -2.911 26.938 Atomic orbital electron populations 1.70808 1.06692 1.30940 1.43350 1.26061 0.96331 1.02149 0.93006 0.83330 0.74762 0.74193 0.76727 1.20274 1.21136 1.21123 1.23702 0.96033 0.92189 1.63635 0.91616 1.84782 1.08091 0.98816 1.97234 1.23317 1.05120 0.94485 1.05284 1.20321 0.86566 0.86334 0.74970 1.90694 1.15289 1.85577 1.47841 1.45957 1.10344 1.04629 1.77258 1.20851 0.96029 0.80885 0.96914 0.88249 1.22285 1.02855 0.95648 0.97644 1.21836 0.92063 0.89420 0.98001 1.47884 1.46281 1.23029 1.16064 1.19624 0.79708 0.80070 0.86683 1.90670 1.35588 1.51246 1.65014 1.22233 1.08800 0.94690 0.96072 1.22957 0.94141 0.98035 1.03799 1.22971 0.96752 0.97400 1.01370 1.22323 1.01614 0.96207 0.83968 1.22466 0.86174 0.94059 0.94926 0.90689 1.86511 1.24548 1.69747 1.55234 0.91011 0.88933 0.88989 0.76112 0.89631 0.90184 0.89011 0.90649 0.85570 0.88283 0.87633 0.87835 0.87460 0.88167 0.90128 0.77205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.37 13.67 55.49 0.76 -26.61 16 2 C 0.04 1.02 5.49 -17.43 -0.10 0.92 16 3 Si 1.08 24.84 29.92 -169.99 -5.09 19.75 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.61 -17.44 9.50 30.94 0.29 -17.14 16 8 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 9 S -0.12 -3.07 19.60 -107.50 -2.11 -5.18 16 10 C -0.13 -2.61 6.16 36.01 0.22 -2.39 16 11 C 0.53 9.49 7.81 -10.99 -0.09 9.40 16 12 O -0.52 -11.04 15.52 5.55 0.09 -10.95 16 13 N -0.73 -9.44 5.05 -53.76 -0.27 -9.71 16 14 C 0.16 1.73 2.20 -67.89 -0.15 1.58 16 15 H 0.10 1.19 7.58 -51.93 -0.39 0.80 16 16 C -0.14 -1.49 5.51 -26.61 -0.15 -1.64 16 17 C 0.11 0.88 6.35 -3.71 -0.02 0.86 16 18 N -0.60 -5.31 2.91 -172.77 -0.50 -5.82 16 19 C 0.55 5.61 7.48 -10.99 -0.08 5.53 16 20 O -0.55 -7.23 15.67 5.55 0.09 -7.15 16 21 C -0.20 -1.50 5.12 -91.77 -0.47 -1.97 16 22 C -0.15 -0.94 10.24 -26.69 -0.27 -1.21 16 23 C -0.15 -1.02 10.05 -26.69 -0.27 -1.28 16 24 C 0.08 0.66 6.08 -3.72 -0.02 0.64 16 25 C 0.08 0.70 3.38 -26.61 -0.09 0.61 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 O -0.55 -4.76 12.09 -35.23 -0.43 -5.18 16 28 H 0.28 8.76 7.12 -40.82 -0.29 8.47 16 29 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 30 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 31 H 0.40 4.57 8.25 -40.82 -0.34 4.23 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 0.88 7.61 -51.93 -0.40 0.49 16 34 H 0.09 0.59 5.51 -51.93 -0.29 0.31 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.13 0.79 6.57 -51.93 -0.34 0.45 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.11 0.89 7.67 -51.93 -0.40 0.49 16 41 H 0.10 0.84 7.01 -51.93 -0.36 0.48 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.38 2.14 9.08 45.56 0.41 2.56 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -36.70 368.60 -8.50 -45.20 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.40 Total: 6.20 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.19 Total: -6.10 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: -0.02 Total: -42.14 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.25 Total: -23.28 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.09 Total: 19.75 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -2.11 Total: -5.18 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.70 -8.50 -45.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001685456385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.284 kcal (2) G-P(sol) polarization free energy of solvation -36.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds