Wall clock time and date at job start Tue Mar 31 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00353 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00445 * 3 2 1 7 7 C 1.38798 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99738 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47234 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99701 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00005 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99680 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.46275 * 324.97445 * 14 13 11 16 16 C 1.53041 * 109.45902 * 84.93204 * 14 13 11 17 17 C 1.53194 * 109.31312 * 181.38363 * 16 14 13 18 18 N 1.46929 * 108.77475 * 305.36362 * 17 16 14 19 19 C 1.34778 * 120.62722 * 233.58332 * 18 17 16 20 20 O 1.21284 * 119.99304 * 180.02562 * 19 18 17 21 21 C 1.50695 * 120.00383 * 0.02655 * 19 18 17 22 22 C 1.53005 * 117.49789 * 248.74394 * 21 19 18 23 23 C 1.52997 * 117.49795 * 180.08381 * 21 19 18 24 24 C 1.46923 * 118.73753 * 53.60753 * 18 17 16 25 25 C 1.53044 * 109.46181 * 204.99764 * 14 13 11 26 26 H 1.08999 * 109.49337 * 58.66231 * 25 14 13 27 27 O 1.42903 * 109.49676 * 298.60254 * 25 14 13 28 28 H 0.97005 * 119.99723 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47255 * 299.99975 * 10 9 7 30 30 H 1.09001 * 109.46783 * 60.00283 * 10 9 7 31 31 H 0.96995 * 120.00238 * 359.97438 * 13 11 10 32 32 H 1.09002 * 109.49653 * 301.33352 * 16 14 13 33 33 H 1.09007 * 109.49994 * 61.43431 * 16 14 13 34 34 H 1.08999 * 109.58911 * 185.57710 * 17 16 14 35 35 H 1.09000 * 109.58899 * 65.15075 * 17 16 14 36 36 H 1.09002 * 115.54906 * 34.41574 * 21 19 18 37 37 H 1.08991 * 117.49660 * 359.97438 * 22 21 19 38 38 H 1.09002 * 117.49513 * 145.02049 * 22 21 19 39 39 H 1.08999 * 117.49884 * 214.97592 * 23 21 19 40 40 H 1.09004 * 117.50399 * 0.02562 * 23 21 19 41 41 H 1.09000 * 109.58764 * 186.60150 * 24 18 17 42 42 H 1.09004 * 109.58207 * 66.18081 * 24 18 17 43 43 H 0.96701 * 114.00078 * 179.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6966 -1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0021 11 6 1.9876 -5.3027 -0.0017 12 8 0.7913 -5.5023 -0.0009 13 7 2.8444 -6.3430 -0.0022 14 6 2.3307 -7.7150 -0.0024 15 1 1.4153 -7.7601 0.5877 16 6 2.0321 -8.1474 -1.4397 17 6 1.4628 -9.5696 -1.4331 18 7 2.3982 -10.4501 -0.7200 19 6 2.8577 -11.5769 -1.2994 20 8 3.6292 -12.2957 -0.7001 21 6 2.4128 -11.9438 -2.6917 22 6 1.5065 -13.1670 -2.8444 23 6 2.9683 -13.2362 -3.2932 24 6 2.8228 -10.0791 0.6367 25 6 3.3768 -8.6513 0.6069 26 1 3.6062 -8.3287 1.6224 27 8 4.5662 -8.6169 -0.1845 28 1 -0.4850 -0.8401 0.0004 29 1 3.1239 -3.7308 -0.8925 30 1 3.1252 -3.7316 0.8875 31 1 3.8011 -6.1834 -0.0032 32 1 1.3043 -7.4663 -1.8808 33 1 2.9518 -8.1265 -2.0245 34 1 1.3411 -9.9193 -2.4582 35 1 0.4978 -9.5746 -0.9262 36 1 2.2450 -11.1054 -3.3678 37 1 1.2324 -13.7065 -1.9380 38 1 0.7426 -13.1334 -3.6213 39 1 3.1655 -13.2483 -4.3651 40 1 3.6553 -13.8214 -2.6818 41 1 3.5985 -10.7650 0.9772 42 1 1.9687 -10.1256 1.3124 43 1 5.2740 -9.1880 0.1441 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001685456385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:34 Heat of formation + Delta-G solvation = -125.733495 kcal Electronic energy + Delta-G solvation = -25638.080157 eV Core-core repulsion = 21808.978507 eV Total energy + Delta-G solvation = -3829.101650 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.75049 -40.74585 -39.24284 -37.06661 -36.59171 -35.64031 -34.74653 -32.67125 -31.50321 -30.40159 -27.17440 -26.67580 -24.87739 -24.11477 -23.32875 -21.80112 -21.65863 -20.45436 -20.06303 -18.87314 -18.07439 -17.97384 -17.56808 -16.87873 -16.68531 -16.49693 -16.28306 -15.82508 -15.70234 -15.39747 -15.29854 -14.96753 -14.75708 -14.48935 -14.14896 -14.05783 -13.84057 -13.58567 -13.44344 -13.05351 -12.87657 -12.73947 -12.49349 -12.42244 -11.95666 -11.83049 -11.56861 -11.54695 -11.44483 -11.30951 -11.09767 -11.07087 -10.84617 -10.33184 -10.17761 -9.72810 -8.92354 -8.86269 -6.27264 1.18652 1.40426 1.49888 1.52265 1.60568 1.80895 1.83771 2.14421 2.34555 2.88234 3.02138 3.10000 3.16222 3.34656 3.58100 3.69781 3.76946 3.82588 3.83702 3.94906 4.01452 4.10004 4.16169 4.25538 4.37211 4.42622 4.49864 4.60419 4.61399 4.64602 4.72205 4.83277 4.91472 5.01483 5.15729 5.20316 5.38907 5.39106 5.64267 6.15502 6.25895 6.41389 6.70062 7.05906 7.06426 7.13350 8.51200 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.031767 B = 0.002171 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.206187 B =12892.590203 C =13206.152142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.019 4.019 3 Si 1.136 2.864 4 H -0.280 1.280 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.615 4.615 8 H 0.074 0.926 9 S -0.189 6.189 10 C -0.111 4.111 11 C 0.537 3.463 12 O -0.559 6.559 13 N -0.704 5.704 14 C 0.152 3.848 15 H 0.090 0.910 16 C -0.137 4.137 17 C 0.114 3.886 18 N -0.598 5.598 19 C 0.544 3.456 20 O -0.584 6.584 21 C -0.208 4.208 22 C -0.140 4.140 23 C -0.151 4.151 24 C 0.081 3.919 25 C 0.097 3.903 26 H 0.091 0.909 27 O -0.567 6.567 28 H 0.261 0.739 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.416 0.584 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.143 0.857 37 H 0.090 0.910 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.904 -26.252 -3.712 27.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.222 4.222 3 Si 0.953 3.047 4 H -0.205 1.205 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.763 4.763 8 H 0.092 0.908 9 S 0.038 5.962 10 C -0.263 4.263 11 C 0.322 3.678 12 O -0.437 6.437 13 N -0.357 5.357 14 C 0.047 3.953 15 H 0.108 0.892 16 C -0.177 4.177 17 C -0.009 4.009 18 N -0.329 5.329 19 C 0.334 3.666 20 O -0.465 6.465 21 C -0.228 4.228 22 C -0.177 4.177 23 C -0.188 4.188 24 C -0.042 4.042 25 C 0.037 3.963 26 H 0.109 0.891 27 O -0.375 6.375 28 H 0.072 0.928 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.253 0.747 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.101 0.899 36 H 0.161 0.839 37 H 0.108 0.892 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.110 0.890 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 6.778 -24.938 -3.722 26.109 hybrid contribution 2.075 -1.399 0.481 2.548 sum 8.853 -26.337 -3.241 27.974 Atomic orbital electron populations 1.70925 1.07958 1.30026 1.45860 1.27813 0.96344 1.06346 0.91738 0.82725 0.73953 0.69584 0.78410 1.20513 1.18839 1.18859 1.24040 0.96494 0.92940 1.62789 0.90817 1.84974 1.12901 1.00911 1.97463 1.23232 1.02259 0.93965 1.06830 1.19947 0.86320 0.86409 0.75104 1.90687 1.16933 1.85917 1.50142 1.45739 1.10337 1.04555 1.75073 1.21066 0.96724 0.79862 0.97611 0.89158 1.22168 1.02098 0.96661 0.96752 1.21871 0.91853 0.87834 0.99317 1.47950 1.45956 1.22742 1.16264 1.20095 0.79126 0.79867 0.87484 1.90650 1.37315 1.52419 1.66133 1.22315 1.09924 0.95693 0.94887 1.23044 0.94247 0.96448 1.03973 1.23017 0.97003 0.96672 1.02146 1.22390 1.02091 0.95787 0.83947 1.22311 0.85519 0.93315 0.95194 0.89122 1.86463 1.24974 1.70347 1.55678 0.92809 0.87417 0.87234 0.74736 0.91587 0.90683 0.87045 0.89901 0.83902 0.89178 0.85256 0.85841 0.89386 0.88339 0.88988 0.75544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.61 13.67 21.65 0.30 -57.31 16 2 C -0.02 -1.11 5.49 84.86 0.47 -0.64 16 3 Si 1.14 49.02 29.92 68.60 2.05 51.07 16 4 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.62 -35.26 9.50 67.95 0.65 -34.61 16 8 H 0.07 3.97 7.80 -2.91 -0.02 3.95 16 9 S -0.19 -10.25 19.60 -56.49 -1.11 -11.36 16 10 C -0.11 -4.33 6.16 71.24 0.44 -3.90 16 11 C 0.54 18.75 7.81 87.66 0.68 19.43 16 12 O -0.56 -23.97 15.52 -3.04 -0.05 -24.02 16 13 N -0.70 -17.10 5.05 -442.40 -2.23 -19.34 16 14 C 0.15 3.09 2.20 45.02 0.10 3.19 16 15 H 0.09 2.08 7.58 -2.39 -0.02 2.06 16 16 C -0.14 -2.65 5.51 30.67 0.17 -2.48 16 17 C 0.11 1.63 6.35 86.36 0.55 2.18 16 18 N -0.60 -9.63 2.91 -818.92 -2.39 -12.02 16 19 C 0.54 10.45 7.48 87.66 0.66 11.11 16 20 O -0.58 -15.23 15.67 -3.04 -0.05 -15.28 16 21 C -0.21 -2.78 5.12 -11.54 -0.06 -2.84 16 22 C -0.14 -1.45 10.24 30.62 0.31 -1.14 16 23 C -0.15 -1.86 10.05 30.62 0.31 -1.55 16 24 C 0.08 1.17 6.08 86.36 0.52 1.69 16 25 C 0.10 1.40 3.38 30.67 0.10 1.51 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 27 O -0.57 -8.45 12.09 -148.98 -1.80 -10.25 16 28 H 0.26 17.08 7.12 -92.70 -0.66 16.42 16 29 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 30 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 31 H 0.42 8.37 8.25 -92.71 -0.77 7.60 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.54 7.61 -2.38 -0.02 1.52 16 34 H 0.11 1.17 5.51 -2.39 -0.01 1.16 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.14 1.39 6.57 -2.39 -0.02 1.38 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.09 1.44 7.67 -2.38 -0.02 1.42 16 41 H 0.10 1.52 7.01 -2.39 -0.02 1.50 16 42 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.39 3.60 9.08 -74.06 -0.67 2.93 16 Total: -1.00 -81.43 368.60 -0.65 -82.08 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -0.28 Total: 24.47 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 4.90 Total: -8.04 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -4.33 Total: -88.67 kcal Atomic # 8 Polarization: -47.65 SS G_CDS: -1.90 Total: -49.55 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 2.05 Total: 51.07 kcal Atomic # 16 Polarization: -10.25 SS G_CDS: -1.11 Total: -11.36 kcal Total: -81.43 -0.65 -82.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001685456385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.649 kcal (2) G-P(sol) polarization free energy of solvation -81.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds