Wall clock time and date at job start Tue Mar 31 2020 05:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35901 * 116.99785 * 2 1 4 4 C 1.38727 * 120.05484 * 179.97438 * 3 2 1 5 5 C 1.38148 * 119.94448 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.05372 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94364 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.46892 * 90.00190 * 7 6 5 9 9 N 1.46506 * 109.46985 * 179.97438 * 8 7 6 10 10 S 1.65601 * 119.99498 * 164.44607 * 9 8 7 11 11 O 1.42103 * 106.39696 * 176.31863 * 10 9 8 12 12 O 1.42094 * 106.40316 * 309.23445 * 10 9 8 13 13 N 1.65595 * 107.22052 * 62.77885 * 10 9 8 14 14 C 1.46500 * 120.00225 * 273.11296 * 13 10 9 15 15 C 1.46500 * 119.99866 * 93.10630 * 13 10 9 16 16 C 1.50702 * 109.47055 * 95.57491 * 15 13 10 17 17 H 1.08001 * 119.99846 * 4.71427 * 16 15 13 18 18 C 1.37883 * 120.00076 * 184.71712 * 16 15 13 19 19 N 1.31514 * 119.99891 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99868 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47459 * 59.99590 * 20 18 16 22 22 H 1.48496 * 109.46967 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46691 * 299.99803 * 20 18 16 24 24 C 1.38260 * 120.11538 * 0.26042 * 6 5 4 25 25 C 1.38147 * 120.05505 * 359.44147 * 24 6 5 26 26 H 1.09004 * 109.46906 * 60.00535 * 1 2 3 27 27 H 1.09004 * 109.46786 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47051 * 300.00360 * 1 2 3 29 29 H 1.08005 * 120.02950 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.97172 * 180.02562 * 5 4 3 31 31 H 1.08996 * 109.47682 * 210.00738 * 7 6 5 32 32 H 1.09007 * 109.47450 * 330.00919 * 7 6 5 33 33 H 1.08992 * 109.47706 * 300.00320 * 8 7 6 34 34 H 1.09005 * 109.46739 * 60.00607 * 8 7 6 35 35 H 0.96992 * 119.99853 * 344.44952 * 9 8 7 36 36 H 1.08997 * 109.47061 * 89.99596 * 14 13 10 37 37 H 1.08997 * 109.47031 * 210.00245 * 14 13 10 38 38 H 1.09001 * 109.46506 * 329.99389 * 14 13 10 39 39 H 1.09003 * 109.47231 * 215.57392 * 15 13 10 40 40 H 1.08998 * 109.47863 * 335.57555 * 15 13 10 41 41 H 0.97000 * 119.99589 * 179.97438 * 19 18 16 42 42 H 1.08005 * 119.97725 * 179.70083 * 24 6 5 43 43 H 1.08000 * 120.03030 * 180.25948 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0561 2.5170 0.0011 6 6 3.3019 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 6 4.2179 5.4740 -1.4394 9 7 4.8825 6.7797 -1.4383 10 16 5.6013 7.3439 -2.8193 11 8 6.0719 8.6512 -2.5212 12 8 6.4464 6.3015 -3.2865 13 7 4.4091 7.5236 -3.9544 14 6 4.0247 6.3898 -4.7988 15 6 3.7385 8.8163 -4.1140 16 6 4.3986 9.5907 -5.2256 17 1 5.1835 9.1336 -5.8100 18 6 4.0005 10.8827 -5.4966 19 7 3.0444 11.4390 -4.7853 20 14 4.8193 11.8428 -6.8741 21 1 4.6210 11.1288 -8.1610 22 1 4.2157 13.1968 -6.9603 23 1 6.2727 11.9661 -6.5953 24 6 1.9211 3.6048 0.0070 25 6 1.2915 2.3752 0.0003 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 4.0209 0.3800 0.0005 30 1 5.1345 2.5751 0.0011 31 1 3.3579 5.7460 0.5170 32 1 4.9439 4.9380 0.5168 33 1 4.8461 4.7467 -1.9536 34 1 3.2601 5.5547 -1.9534 35 1 4.9014 7.3135 -0.6287 36 1 3.2257 5.8295 -4.3132 37 1 3.6762 6.7573 -5.7639 38 1 4.8864 5.7391 -4.9475 39 1 2.6888 8.6534 -4.3583 40 1 3.8118 9.3810 -3.1846 41 1 2.7647 12.3480 -4.9758 42 1 1.3341 4.5114 0.0123 43 1 0.2129 2.3202 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028082921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:09 Heat of formation + Delta-G solvation = -92.935542 kcal Electronic energy + Delta-G solvation = -25560.472845 eV Core-core repulsion = 21732.793421 eV Total energy + Delta-G solvation = -3827.679424 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.40895 -38.16779 -36.59017 -35.63624 -35.41235 -35.12187 -32.42137 -31.93590 -31.29096 -28.40899 -27.75412 -26.94916 -25.04982 -23.37030 -22.85984 -22.26642 -21.14759 -18.90428 -18.41680 -17.27128 -16.70864 -16.55421 -16.39608 -16.07132 -15.95407 -15.38549 -14.94193 -14.80712 -14.47713 -14.25396 -13.91852 -13.62434 -13.33130 -13.24828 -13.08398 -12.42493 -12.32053 -12.28567 -12.13097 -11.93846 -11.63485 -11.58568 -11.39389 -11.30111 -11.14120 -11.03947 -11.00436 -10.97380 -10.69211 -10.47285 -10.02893 -9.76545 -9.32247 -9.21294 -8.42939 -8.33661 -8.04435 -6.05279 -4.09333 1.09837 1.12965 1.30699 2.97074 3.34518 3.38087 3.42473 3.46601 3.58502 4.16488 4.45833 4.49925 4.60847 4.69551 4.74449 4.79651 4.93026 4.96342 5.09869 5.12210 5.14539 5.26475 5.30345 5.37851 5.50216 5.63519 5.70270 5.75010 5.86907 6.01824 6.03145 6.07791 6.14967 6.33043 6.43350 6.51227 6.57848 7.09718 7.12307 7.28611 7.43402 7.64669 7.92319 8.22029 8.92923 9.55867 11.03368 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.021322 B = 0.002541 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.861532 B =11017.852080 C =11575.076686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.121 3.879 4 C -0.150 4.150 5 C -0.074 4.074 6 C -0.117 4.117 7 C -0.083 4.083 8 C 0.126 3.874 9 N -1.136 6.136 10 S 2.783 3.217 11 O -0.964 6.964 12 O -0.999 6.999 13 N -0.995 5.995 14 C 0.094 3.906 15 C 0.257 3.743 16 C -0.531 4.531 17 H 0.060 0.940 18 C 0.062 3.938 19 N -0.896 5.896 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.073 4.073 25 C -0.206 4.206 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.412 0.588 36 H 0.038 0.962 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.031 0.969 40 H 0.043 0.957 41 H 0.264 0.736 42 H 0.127 0.873 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.609 -20.515 12.083 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.169 4.169 5 C -0.092 4.092 6 C -0.118 4.118 7 C -0.122 4.122 8 C -0.001 4.001 9 N -0.895 5.895 10 S 2.790 3.210 11 O -0.948 6.948 12 O -0.982 6.982 13 N -0.838 5.838 14 C -0.053 4.053 15 C 0.135 3.865 16 C -0.570 4.570 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.535 5.535 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.091 4.091 25 C -0.225 4.225 26 H 0.075 0.925 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.245 0.755 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.145 0.855 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.724 -20.468 11.797 24.092 hybrid contribution -0.443 0.898 -0.376 1.070 sum -5.167 -19.570 11.422 23.241 Atomic orbital electron populations 1.23055 0.78383 1.03895 1.01446 1.86063 1.21404 1.27084 1.88807 1.19062 0.92426 0.84121 0.96806 1.20424 0.91336 0.98695 1.06405 1.20934 1.00076 0.90930 0.97277 1.19692 0.93550 0.94921 1.03612 1.20731 1.01156 0.93532 0.96740 1.21191 0.97519 0.84113 0.97294 1.56271 1.75153 1.28233 1.29841 1.01910 0.73577 0.72764 0.72740 1.93643 1.78989 1.38025 1.84155 1.93520 1.64433 1.59593 1.80646 1.57585 1.57974 1.19108 1.49166 1.21375 0.99473 0.88079 0.96375 1.19056 0.92749 0.76703 0.97997 1.21467 1.20409 0.98469 1.16687 0.92206 1.24938 0.95043 0.97287 0.96729 1.69908 1.28835 1.14757 1.39951 0.86571 0.79969 0.78890 0.82096 1.20176 1.21170 1.19994 1.20903 0.93973 0.97209 0.97016 1.21231 1.00033 0.92327 1.08887 0.92531 0.88300 0.92668 0.85209 0.85055 0.90209 0.90160 0.90590 0.91786 0.75531 0.94377 0.90415 0.91609 0.95060 0.93954 0.92638 0.85472 0.85484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.02 10.50 -19.43 -0.20 -3.22 16 3 C 0.12 1.20 6.69 -39.22 -0.26 0.94 16 4 C -0.15 -1.44 9.99 -39.43 -0.39 -1.84 16 5 C -0.07 -0.69 9.69 -39.61 -0.38 -1.08 16 6 C -0.12 -1.12 5.13 -104.61 -0.54 -1.66 16 7 C -0.08 -0.78 5.49 -27.88 -0.15 -0.93 16 8 C 0.13 1.50 6.24 -4.04 -0.03 1.47 16 9 N -1.14 -16.24 6.05 -10.61 -0.06 -16.30 16 10 S 2.78 54.84 6.09 -107.50 -0.65 54.19 16 11 O -0.96 -23.08 16.99 -57.17 -0.97 -24.06 16 12 O -1.00 -20.83 16.34 -57.17 -0.93 -21.77 16 13 N -1.00 -20.57 3.23 -123.05 -0.40 -20.97 16 14 C 0.09 1.60 10.69 59.85 0.64 2.24 16 15 C 0.26 6.44 5.10 -5.19 -0.03 6.42 16 16 C -0.53 -14.98 9.38 -34.44 -0.32 -15.30 16 17 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 20 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 C -0.07 -0.67 9.69 -39.61 -0.38 -1.06 16 25 C -0.21 -1.86 9.04 -39.43 -0.36 -2.22 16 26 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 27 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 29 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 30 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 31 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.08 0.93 7.79 -51.93 -0.40 0.53 16 34 H 0.06 0.74 8.05 -51.93 -0.42 0.33 16 35 H 0.41 5.07 8.66 -34.47 -0.30 4.77 16 36 H 0.04 0.53 8.05 -51.93 -0.42 0.12 16 37 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 38 H 0.07 1.07 7.05 -51.93 -0.37 0.70 16 39 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 40 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 42 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 43 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 LS Contribution 375.26 15.07 5.66 5.66 Total: -1.00 -35.33 375.26 -9.50 -44.83 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.34 Total: 0.41 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -1.31 Total: -10.18 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: 0.28 Total: -62.79 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -2.11 Total: -49.04 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 54.84 SS G_CDS: -0.65 Total: 54.19 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.33 -9.50 -44.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028082921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.103 kcal (2) G-P(sol) polarization free energy of solvation -35.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds