Wall clock time and date at job start Tue Mar 31 2020 05:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46821 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46996 * 120.00312 * 8 6 4 11 11 H 1.48495 * 109.46665 * 239.99993 * 8 6 4 12 12 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 13 13 C 1.46503 * 120.00249 * 60.00308 * 12 2 1 14 14 S 1.65603 * 119.99847 * 240.00000 * 12 2 1 15 15 O 1.42105 * 106.40178 * 203.54115 * 14 12 2 16 16 O 1.42100 * 106.40428 * 336.46445 * 14 12 2 17 17 N 1.65603 * 107.21853 * 90.00274 * 14 12 2 18 18 C 1.46504 * 119.99815 * 64.99851 * 17 14 12 19 19 C 1.53000 * 109.46819 * 165.00484 * 18 17 14 20 20 H 1.09005 * 109.47173 * 304.99544 * 19 18 17 21 21 O 1.42893 * 109.47386 * 64.99993 * 19 18 17 22 22 C 1.50706 * 109.46854 * 185.00054 * 19 18 17 23 23 C 1.38230 * 119.99777 * 279.72160 * 22 19 18 24 24 C 1.38236 * 119.99831 * 179.78688 * 23 22 19 25 25 C 1.38240 * 120.00015 * 0.44570 * 24 23 22 26 26 C 1.38230 * 119.99577 * 359.80912 * 25 24 23 27 27 C 1.38231 * 120.00545 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.46807 * 89.99603 * 13 12 2 33 33 H 1.08998 * 109.47196 * 209.99887 * 13 12 2 34 34 H 1.09000 * 109.46808 * 330.00267 * 13 12 2 35 35 H 0.96992 * 120.00147 * 244.99971 * 17 14 12 36 36 H 1.09004 * 109.47272 * 285.00087 * 18 17 14 37 37 H 1.09001 * 109.47328 * 45.00178 * 18 17 14 38 38 H 0.96698 * 114.00291 * 59.99950 * 21 19 18 39 39 H 1.07998 * 120.00315 * 0.02562 * 23 22 19 40 40 H 1.07999 * 120.00128 * 180.27380 * 24 23 22 41 41 H 1.07998 * 119.99828 * 179.83415 * 25 24 23 42 42 H 1.08001 * 119.99505 * 180.02562 * 26 25 24 43 43 H 1.07996 * 120.00411 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 3.1456 -2.2874 -3.6039 10 1 1.1662 -1.5863 -4.8162 11 1 3.1467 -0.1870 -4.8165 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7119 -0.8790 2.9814 16 8 3.5794 1.1830 1.5749 17 7 1.9607 0.8089 3.3999 18 6 1.1510 -0.0355 4.2817 19 6 0.6086 0.8073 5.4378 20 1 1.4364 1.3001 5.9478 21 8 -0.2912 1.7931 4.9275 22 6 -0.1211 -0.0838 6.4098 23 6 -1.4181 -0.4810 6.1435 24 6 -2.0859 -1.3020 7.0329 25 6 -1.4599 -1.7182 8.1930 26 6 -0.1648 -1.3166 8.4618 27 6 0.5046 -0.4993 7.5703 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.7095 1.1620 -3.4843 32 1 2.4158 -2.7377 0.9715 33 1 1.6239 -2.2854 2.5001 34 1 0.6905 -2.3003 0.9844 35 1 1.9054 1.7748 3.4683 36 1 0.3188 -0.4569 3.7177 37 1 1.7670 -0.8426 4.6782 38 1 -1.0538 1.4253 4.4602 39 1 -1.9083 -0.1532 5.2387 40 1 -3.0976 -1.6160 6.8227 41 1 -1.9826 -2.3574 8.8892 42 1 0.3244 -1.6421 9.3680 43 1 1.5166 -0.1859 7.7800 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282995182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:27 Heat of formation + Delta-G solvation = -100.180082 kcal Electronic energy + Delta-G solvation = -26638.963799 eV Core-core repulsion = 22810.970229 eV Total energy + Delta-G solvation = -3827.993571 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.95168 -37.48896 -36.64817 -36.17129 -35.22574 -34.34113 -32.58416 -31.84525 -31.14120 -29.10916 -27.69943 -25.60892 -25.13690 -23.71098 -22.83824 -21.37362 -20.76797 -18.84173 -17.92277 -17.35359 -16.91909 -16.63824 -16.16131 -16.12447 -15.46964 -15.19960 -14.84146 -14.50053 -14.29444 -13.97459 -13.65533 -13.47150 -13.27729 -13.03393 -12.90485 -12.72533 -12.07479 -12.03544 -11.75665 -11.64970 -11.52091 -11.44919 -11.36452 -11.25881 -11.21137 -10.99003 -10.80769 -10.48021 -10.30661 -10.27153 -10.03184 -9.41590 -9.23903 -9.19771 -9.02290 -8.46133 -7.98525 -6.07545 -4.13929 0.98868 1.11734 1.23239 3.27674 3.35904 3.38765 3.41699 3.52639 4.10302 4.22004 4.34607 4.40467 4.54310 4.65932 4.76445 4.83432 4.93541 5.03876 5.20274 5.24083 5.26576 5.40068 5.53954 5.62603 5.66840 5.77430 5.94746 6.10602 6.16507 6.22733 6.28319 6.34867 6.60429 6.68881 6.74960 6.77591 7.00856 7.15857 7.37420 7.48613 7.63426 7.78804 8.03897 8.27454 8.88737 9.52001 10.98210 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.019682 B = 0.003253 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.245115 B = 8604.524315 C = 8995.209933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.990 5.990 13 C 0.109 3.891 14 S 2.780 3.220 15 O -0.997 6.997 16 O -0.973 6.973 17 N -1.129 6.129 18 C 0.095 3.905 19 C 0.143 3.857 20 H 0.115 0.885 21 O -0.549 6.549 22 C -0.116 4.116 23 C -0.109 4.109 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.107 4.107 28 H 0.032 0.968 29 H 0.011 0.989 30 H 0.093 0.907 31 H 0.262 0.738 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.416 0.584 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.377 0.623 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 -3.408 19.829 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.833 5.833 13 C -0.038 4.038 14 S 2.788 3.212 15 O -0.981 6.981 16 O -0.957 6.957 17 N -0.888 5.888 18 C -0.032 4.032 19 C 0.083 3.917 20 H 0.133 0.867 21 O -0.355 6.355 22 C -0.117 4.117 23 C -0.127 4.127 24 C -0.135 4.135 25 C -0.138 4.138 26 C -0.137 4.137 27 C -0.125 4.125 28 H 0.052 0.948 29 H 0.030 0.970 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.250 0.750 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.225 0.775 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.514 -3.041 19.937 20.908 hybrid contribution -0.636 -0.573 -1.084 1.381 sum -6.150 -3.614 18.853 20.157 Atomic orbital electron populations 1.22112 0.98311 0.99598 1.00643 1.18734 0.91253 0.93033 0.80485 0.92293 1.21379 1.31493 1.12978 0.90052 0.91909 1.24911 0.94982 0.95014 0.99018 1.69867 1.36652 1.22708 1.23672 0.86443 0.78594 0.79678 0.82706 1.19737 1.21016 1.20896 1.57689 1.70025 1.19721 1.35835 1.21159 1.01769 0.82260 0.98581 1.01949 0.73635 0.73159 0.72429 1.93535 1.69133 1.60794 1.74595 1.93619 1.74297 1.55949 1.71798 1.56153 1.62157 1.17677 1.52856 1.21860 0.95972 0.93710 0.91667 1.21020 0.91537 0.88064 0.91123 0.86724 1.86632 1.38436 1.34552 1.75849 1.20485 0.95370 0.99341 0.96482 1.20934 0.94266 0.97826 0.99685 1.21142 1.00052 0.97833 0.94465 1.21202 0.95275 0.99949 0.97377 1.21160 0.95019 0.98010 0.99494 1.21047 1.00006 0.97852 0.93606 0.94846 0.97036 0.88885 0.92760 0.93215 0.93519 0.90972 0.74982 0.91300 0.89667 0.77458 0.85915 0.85845 0.86055 0.85893 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.95 37.16 0.33 -2.91 16 2 C 0.27 6.47 2.62 -69.08 -0.18 6.29 16 3 H 0.06 1.59 6.91 -51.93 -0.36 1.23 16 4 C -0.52 -13.95 8.37 -34.44 -0.29 -14.24 16 5 H 0.06 1.69 7.65 -52.49 -0.40 1.29 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.69 11.32 55.43 0.63 -24.06 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.99 -20.14 3.12 -115.85 -0.36 -20.50 16 13 C 0.11 1.89 9.53 59.85 0.57 2.46 16 14 S 2.78 53.83 6.10 -107.50 -0.66 53.17 16 15 O -1.00 -20.45 16.68 -57.17 -0.95 -21.40 16 16 O -0.97 -22.71 16.70 -57.17 -0.95 -23.66 16 17 N -1.13 -16.34 6.02 -10.61 -0.06 -16.41 16 18 C 0.10 1.12 5.86 -4.04 -0.02 1.10 16 19 C 0.14 1.44 3.30 -27.88 -0.09 1.35 16 20 H 0.12 1.12 8.00 -51.93 -0.42 0.70 16 21 O -0.55 -5.82 12.99 -35.23 -0.46 -6.28 16 22 C -0.12 -1.10 4.97 -104.62 -0.52 -1.62 16 23 C -0.11 -0.95 9.32 -39.58 -0.37 -1.32 16 24 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 25 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 26 C -0.12 -0.96 10.05 -39.59 -0.40 -1.35 16 27 C -0.11 -0.95 9.67 -39.58 -0.38 -1.34 16 28 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.67 7.79 -51.93 -0.40 0.27 16 34 H 0.07 1.20 6.43 -51.93 -0.33 0.87 16 35 H 0.42 5.61 8.51 -34.47 -0.29 5.32 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.01 7.75 -51.93 -0.40 0.61 16 38 H 0.38 3.01 7.50 45.56 0.34 3.35 16 39 H 0.12 0.86 6.78 -52.49 -0.36 0.51 16 40 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.13 0.94 8.04 -52.49 -0.42 0.51 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -33.54 366.82 -9.93 -43.47 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.38 Total: 6.66 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -2.24 Total: -12.62 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.20 Total: -60.97 kcal Atomic # 8 Polarization: -48.98 SS G_CDS: -2.37 Total: -51.35 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 53.83 SS G_CDS: -0.66 Total: 53.17 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.54 -9.93 -43.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282995182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.708 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds