Wall clock time and date at job start Tue Mar 31 2020 05:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86800 * 120.00599 * 2 1 4 4 H 1.48500 * 109.47387 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.47016 * 59.99664 * 3 2 1 6 6 H 1.48494 * 109.47100 * 300.00176 * 3 2 1 7 7 C 1.40038 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99714 * 155.37678 * 7 2 1 9 9 C 1.41534 * 120.00203 * 335.37518 * 7 2 1 10 10 C 1.41182 * 120.99530 * 329.38715 * 9 7 2 11 11 C 1.37588 * 119.01628 * 179.97438 * 10 9 7 12 12 N 1.32085 * 121.10624 * 0.02562 * 11 10 9 13 13 C 1.32465 * 122.23480 * 359.97438 * 12 11 10 14 14 N 1.39473 * 119.58155 * 180.02562 * 13 12 11 15 15 C 1.34780 * 119.99821 * 355.53155 * 14 13 12 16 16 O 1.21278 * 119.99915 * 4.72560 * 15 14 13 17 17 C 1.50698 * 120.00072 * 184.72671 * 15 14 13 18 18 H 1.09009 * 107.90536 * 296.60970 * 17 15 14 19 19 C 1.51010 * 108.05323 * 53.18155 * 17 15 14 20 20 C 1.53672 * 110.86759 * 193.85287 * 19 17 15 21 21 C 1.51810 * 106.96148 * 281.00097 * 20 19 17 22 22 N 1.30308 * 127.91051 * 245.60201 * 21 20 19 23 23 N 1.29269 * 107.46409 * 180.02562 * 22 21 20 24 24 N 1.29151 * 109.42739 * 359.97438 * 23 22 21 25 25 N 1.28386 * 108.36075 * 359.97438 * 24 23 22 26 26 C 1.47655 * 127.75817 * 180.02562 * 25 24 23 27 27 C 1.50875 * 108.05434 * 180.02562 * 17 15 14 28 28 C 1.38600 * 120.83957 * 359.72119 * 13 12 11 29 29 H 0.96994 * 120.00957 * 174.19175 * 1 2 3 30 30 H 1.08000 * 120.48964 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.44529 * 180.02562 * 11 10 9 32 32 H 0.96995 * 120.00396 * 175.53083 * 14 13 12 33 33 H 1.08999 * 109.20654 * 314.21710 * 19 17 15 34 34 H 1.09004 * 109.19874 * 73.50598 * 19 17 15 35 35 H 1.09001 * 109.95465 * 161.63648 * 20 19 17 36 36 H 1.08997 * 109.94435 * 40.36500 * 20 19 17 37 37 H 1.09007 * 109.91540 * 354.84209 * 26 25 24 38 38 H 1.09005 * 109.92070 * 233.67154 * 26 25 24 39 39 H 1.09000 * 109.12502 * 286.15785 * 27 17 15 40 40 H 1.09000 * 109.13131 * 45.26019 * 27 17 15 41 41 H 1.08001 * 120.60326 * 180.30808 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3462 0.0006 5 1 1.8827 2.3964 1.2125 6 1 1.8828 2.3964 -1.2124 7 6 2.0075 -1.2128 0.0005 8 1 3.0138 -1.2555 -0.3892 9 6 1.3963 -2.3826 0.5118 10 6 0.4438 -2.3102 1.5513 11 6 -0.1253 -3.4731 2.0172 12 7 0.2059 -4.6463 1.5087 13 6 1.0935 -4.7683 0.5330 14 7 1.4015 -6.0348 0.0368 15 6 0.8661 -7.1313 0.6092 16 8 0.0508 -7.0139 1.4993 17 6 1.2805 -8.5032 0.1431 18 1 0.9761 -8.6095 -0.8982 19 6 2.7875 -8.5812 0.1997 20 6 3.3017 -9.8056 -0.5737 21 6 3.1041 -11.0125 0.3257 22 7 4.0189 -11.7699 0.8617 23 7 3.4136 -12.6802 1.5517 24 7 2.1366 -12.5100 1.4607 25 7 1.9168 -11.4899 0.7127 26 6 0.6122 -10.9170 0.3254 27 6 0.5229 -9.5224 0.9576 28 6 1.7154 -3.6527 -0.0054 29 1 -0.4851 -0.8356 -0.0850 30 1 0.1660 -1.3563 1.9746 31 1 -0.8551 -3.4258 2.8119 32 1 2.0010 -6.1266 -0.7202 33 1 3.2101 -7.6771 -0.2385 34 1 3.1038 -8.6559 1.2402 35 1 4.3600 -9.6825 -0.8040 36 1 2.7316 -9.9301 -1.4943 37 1 -0.1954 -11.5467 0.6988 38 1 0.5496 -10.8359 -0.7598 39 1 0.9424 -9.5595 1.9630 40 1 -0.5237 -9.2241 1.0192 41 1 2.4348 -3.7562 -0.8042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570049285.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:16 Heat of formation + Delta-G solvation = 110.748726 kcal Electronic energy + Delta-G solvation = -27031.538757 eV Core-core repulsion = 23141.833297 eV Total energy + Delta-G solvation = -3889.705460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.57169 -40.44685 -38.60031 -37.25163 -35.29604 -34.88450 -33.84706 -32.85935 -31.67943 -30.62968 -29.05519 -27.49995 -25.84964 -25.33796 -23.91109 -22.93576 -22.12608 -21.46086 -21.18322 -19.80308 -18.37240 -18.15428 -17.51382 -17.04935 -16.21233 -15.80062 -15.28710 -15.04168 -14.67916 -14.56537 -14.31912 -14.19878 -14.05880 -13.71793 -13.43692 -13.12941 -12.95561 -12.74433 -12.43552 -12.37906 -12.26712 -12.07341 -11.89150 -11.61606 -11.33149 -11.26869 -11.24579 -11.08098 -10.64504 -10.53330 -10.28974 -10.05525 -9.97289 -9.61541 -9.25563 -8.30214 -7.97019 -7.47530 -7.24553 -4.78847 1.04163 1.69713 2.00543 2.22253 2.65345 2.98684 3.07442 3.14243 3.24794 3.28286 3.51480 3.83677 3.89106 4.00817 4.10093 4.28809 4.51400 4.52900 4.53656 4.60076 4.77647 4.88445 4.99531 5.11127 5.28167 5.32034 5.34874 5.40857 5.49513 5.62928 5.70933 5.74625 5.93005 6.29227 6.31246 6.49974 6.61254 7.10522 7.12617 7.40198 7.47547 7.71763 7.90708 8.02947 8.38120 8.39024 8.50279 8.65835 9.40470 9.89142 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.030053 B = 0.002363 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.470097 B =11845.520494 C =12406.231773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.041 3.959 3 Si 1.071 2.929 4 H -0.276 1.276 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.080 0.920 9 C 0.132 3.868 10 C -0.271 4.271 11 C 0.124 3.876 12 N -0.559 5.559 13 C 0.355 3.645 14 N -0.659 5.659 15 C 0.500 3.500 16 O -0.473 6.473 17 C -0.113 4.113 18 H 0.101 0.899 19 C -0.117 4.117 20 C -0.034 4.034 21 C 0.181 3.819 22 N -0.302 5.302 23 N -0.086 5.086 24 N -0.094 5.094 25 N -0.302 5.302 26 C 0.116 3.884 27 C -0.122 4.122 28 C -0.304 4.304 29 H 0.299 0.701 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.407 0.593 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.306 -14.287 -5.843 15.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.182 4.182 3 Si 0.895 3.105 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.203 1.203 7 C -0.549 4.549 8 H 0.098 0.902 9 C 0.123 3.877 10 C -0.295 4.295 11 C -0.028 4.028 12 N -0.279 5.279 13 C 0.129 3.871 14 N -0.305 5.305 15 C 0.284 3.716 16 O -0.342 6.342 17 C -0.135 4.135 18 H 0.119 0.881 19 C -0.156 4.156 20 C -0.075 4.075 21 C -0.097 4.097 22 N -0.151 5.151 23 N -0.079 5.079 24 N -0.079 5.079 25 N -0.105 5.105 26 C -0.004 4.004 27 C -0.161 4.161 28 C -0.330 4.330 29 H 0.112 0.888 30 H 0.129 0.871 31 H 0.144 0.856 32 H 0.242 0.758 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.140 0.860 38 H 0.131 0.869 39 H 0.101 0.899 40 H 0.133 0.867 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.467 -14.512 -3.957 15.113 hybrid contribution 0.404 -0.254 -1.282 1.368 sum 1.871 -14.765 -5.239 15.779 Atomic orbital electron populations 1.70366 1.08246 1.34323 1.28324 1.27070 0.95625 1.04373 0.91112 0.83551 0.75471 0.73258 0.78243 1.20044 1.19809 1.20273 1.20556 1.02841 0.93515 1.37953 0.90179 1.17633 0.89144 0.92126 0.88749 1.22039 1.06662 0.98410 1.02346 1.21850 0.96634 0.87461 0.96865 1.67263 1.18770 1.27257 1.14580 1.18064 0.93420 0.82998 0.92644 1.43480 1.48220 1.04530 1.34295 1.20491 0.82198 0.85500 0.83444 1.90817 1.29798 1.85929 1.27686 1.20779 0.96391 0.93876 1.02405 0.88076 1.21439 0.93258 0.98292 1.02629 1.20736 1.05436 0.86349 0.94950 1.26015 0.81887 1.00360 1.01469 1.74961 1.26091 1.03473 1.10538 1.78873 0.96192 1.16935 1.15923 1.78853 1.13822 1.04209 1.11037 1.48688 1.10351 1.19631 1.31821 1.22852 0.80037 0.95362 1.02184 1.21519 1.04183 0.90336 1.00034 1.21212 1.11632 0.92282 1.07836 0.88780 0.87087 0.85605 0.75783 0.88721 0.90319 0.86611 0.88122 0.85967 0.86923 0.89878 0.86679 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.88 12.54 55.55 0.70 -19.18 16 2 C 0.04 0.98 4.97 -17.34 -0.09 0.90 16 3 Si 1.07 20.27 30.00 -169.99 -5.10 15.17 16 4 H -0.28 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.52 -12.82 9.02 -37.65 -0.34 -13.16 16 8 H 0.08 1.92 7.96 -52.49 -0.42 1.50 16 9 C 0.13 3.26 5.19 -106.55 -0.55 2.71 16 10 C -0.27 -6.60 8.11 -38.70 -0.31 -6.92 16 11 C 0.12 2.87 11.15 -17.68 -0.20 2.68 16 12 N -0.56 -13.13 7.85 -12.52 -0.10 -13.23 16 13 C 0.36 7.52 7.42 -154.70 -1.15 6.37 16 14 N -0.66 -10.05 5.05 -11.49 -0.06 -10.11 16 15 C 0.50 7.16 7.08 -10.99 -0.08 7.09 16 16 O -0.47 -9.09 13.79 5.56 0.08 -9.01 16 17 C -0.11 -0.91 1.97 -93.84 -0.18 -1.09 16 18 H 0.10 0.49 7.68 -51.92 -0.40 0.09 16 19 C -0.12 -0.83 4.89 -27.38 -0.13 -0.97 16 20 C -0.03 -0.19 6.00 -26.99 -0.16 -0.35 16 21 C 0.18 1.76 7.11 -156.73 -1.11 0.65 16 22 N -0.30 -3.98 12.37 32.63 0.40 -3.57 16 23 N -0.09 -1.24 13.45 60.32 0.81 -0.43 16 24 N -0.09 -1.18 13.36 60.35 0.81 -0.38 16 25 N -0.30 -2.86 3.36 -57.37 -0.19 -3.05 16 26 C 0.12 0.64 6.72 -3.21 -0.02 0.62 16 27 C -0.12 -0.97 4.47 -27.60 -0.12 -1.09 16 28 C -0.30 -6.75 9.73 -38.48 -0.37 -7.13 16 29 H 0.30 7.77 6.88 -40.82 -0.28 7.49 16 30 H 0.11 2.75 6.99 -52.49 -0.37 2.38 16 31 H 0.13 2.62 8.06 -52.49 -0.42 2.19 16 32 H 0.41 4.47 7.64 -40.82 -0.31 4.15 16 33 H 0.09 0.58 6.69 -51.93 -0.35 0.23 16 34 H 0.08 0.75 7.92 -51.93 -0.41 0.34 16 35 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.27 7.89 -51.93 -0.41 -0.14 16 37 H 0.12 0.52 8.14 -51.92 -0.42 0.09 16 38 H 0.11 0.28 7.87 -51.93 -0.41 -0.13 16 39 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 40 H 0.12 0.98 7.41 -51.93 -0.38 0.59 16 41 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 LS Contribution 342.32 15.07 5.16 5.16 Total: -1.00 -34.34 342.32 -6.97 -41.31 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -4.64 Total: 7.04 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -4.83 Total: -9.70 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 2.37 Total: -49.96 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.10 Total: 15.17 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.34 -6.97 -41.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570049285.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.055 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds