Wall clock time and date at job start Tue Mar 31 2020 05:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86800 * 120.00599 * 2 1 4 4 H 1.48500 * 109.47387 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.47016 * 59.99664 * 3 2 1 6 6 H 1.48494 * 109.47100 * 300.00176 * 3 2 1 7 7 C 1.40038 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99714 * 155.37678 * 7 2 1 9 9 C 1.41534 * 120.00203 * 335.37518 * 7 2 1 10 10 C 1.41182 * 120.99530 * 329.38715 * 9 7 2 11 11 C 1.37588 * 119.01628 * 179.97438 * 10 9 7 12 12 N 1.32085 * 121.10624 * 0.02562 * 11 10 9 13 13 C 1.32465 * 122.23480 * 359.97438 * 12 11 10 14 14 N 1.39473 * 119.58155 * 180.02562 * 13 12 11 15 15 C 1.34780 * 119.99821 * 355.53155 * 14 13 12 16 16 O 1.21278 * 119.99915 * 4.72560 * 15 14 13 17 17 C 1.50698 * 120.00072 * 184.72671 * 15 14 13 18 18 H 1.09009 * 107.90536 * 296.60970 * 17 15 14 19 19 C 1.51010 * 108.05323 * 53.18155 * 17 15 14 20 20 C 1.53672 * 110.86759 * 193.85287 * 19 17 15 21 21 C 1.51810 * 106.96148 * 281.00097 * 20 19 17 22 22 N 1.30308 * 127.91051 * 245.60201 * 21 20 19 23 23 N 1.29269 * 107.46409 * 180.02562 * 22 21 20 24 24 N 1.29151 * 109.42739 * 359.97438 * 23 22 21 25 25 N 1.28386 * 108.36075 * 359.97438 * 24 23 22 26 26 C 1.47655 * 127.75817 * 180.02562 * 25 24 23 27 27 C 1.50875 * 108.05434 * 180.02562 * 17 15 14 28 28 C 1.38600 * 120.83957 * 359.72119 * 13 12 11 29 29 H 0.96994 * 120.00957 * 174.19175 * 1 2 3 30 30 H 1.08000 * 120.48964 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.44529 * 180.02562 * 11 10 9 32 32 H 0.96995 * 120.00396 * 175.53083 * 14 13 12 33 33 H 1.08999 * 109.20654 * 314.21710 * 19 17 15 34 34 H 1.09004 * 109.19874 * 73.50598 * 19 17 15 35 35 H 1.09001 * 109.95465 * 161.63648 * 20 19 17 36 36 H 1.08997 * 109.94435 * 40.36500 * 20 19 17 37 37 H 1.09007 * 109.91540 * 354.84209 * 26 25 24 38 38 H 1.09005 * 109.92070 * 233.67154 * 26 25 24 39 39 H 1.09000 * 109.12502 * 286.15785 * 27 17 15 40 40 H 1.09000 * 109.13131 * 45.26019 * 27 17 15 41 41 H 1.08001 * 120.60326 * 180.30808 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3462 0.0006 5 1 1.8827 2.3964 1.2125 6 1 1.8828 2.3964 -1.2124 7 6 2.0075 -1.2128 0.0005 8 1 3.0138 -1.2555 -0.3892 9 6 1.3963 -2.3826 0.5118 10 6 0.4438 -2.3102 1.5513 11 6 -0.1253 -3.4731 2.0172 12 7 0.2059 -4.6463 1.5087 13 6 1.0935 -4.7683 0.5330 14 7 1.4015 -6.0348 0.0368 15 6 0.8661 -7.1313 0.6092 16 8 0.0508 -7.0139 1.4993 17 6 1.2805 -8.5032 0.1431 18 1 0.9761 -8.6095 -0.8982 19 6 2.7875 -8.5812 0.1997 20 6 3.3017 -9.8056 -0.5737 21 6 3.1041 -11.0125 0.3257 22 7 4.0189 -11.7699 0.8617 23 7 3.4136 -12.6802 1.5517 24 7 2.1366 -12.5100 1.4607 25 7 1.9168 -11.4899 0.7127 26 6 0.6122 -10.9170 0.3254 27 6 0.5229 -9.5224 0.9576 28 6 1.7154 -3.6527 -0.0054 29 1 -0.4851 -0.8356 -0.0850 30 1 0.1660 -1.3563 1.9746 31 1 -0.8551 -3.4258 2.8119 32 1 2.0010 -6.1266 -0.7202 33 1 3.2101 -7.6771 -0.2385 34 1 3.1038 -8.6559 1.2402 35 1 4.3600 -9.6825 -0.8040 36 1 2.7316 -9.9301 -1.4943 37 1 -0.1954 -11.5467 0.6988 38 1 0.5496 -10.8359 -0.7598 39 1 0.9424 -9.5595 1.9630 40 1 -0.5237 -9.2241 1.0192 41 1 2.4348 -3.7562 -0.8042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570049285.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:15 Heat of formation + Delta-G solvation = 87.359339 kcal Electronic energy + Delta-G solvation = -27032.552997 eV Core-core repulsion = 23141.833297 eV Total energy + Delta-G solvation = -3890.719700 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.37985 -41.66338 -40.10546 -38.22789 -36.52546 -36.05736 -35.38244 -33.67062 -32.46317 -32.38139 -30.58499 -28.36234 -27.64542 -26.05550 -24.76846 -24.15735 -23.86063 -22.47871 -22.08338 -20.96067 -20.01314 -18.93762 -18.54388 -18.01508 -17.59192 -16.57807 -16.50415 -16.37034 -16.22994 -15.88775 -15.63594 -15.18621 -14.98107 -14.89358 -14.61452 -14.46556 -14.08527 -13.87307 -13.71316 -13.56484 -13.10911 -12.94918 -12.84184 -12.82896 -12.43573 -12.33337 -12.05146 -11.98493 -11.92051 -11.79359 -11.73882 -11.51153 -11.14297 -11.01883 -10.86533 -10.16062 -9.71455 -9.29656 -8.95521 -6.68769 0.26533 0.57585 0.87230 1.08681 1.14732 1.53474 1.62673 1.80451 1.81642 2.01525 2.32206 2.73765 2.92619 3.22351 3.30596 3.40227 3.53689 3.67760 3.83551 3.99706 4.02685 4.11684 4.17966 4.35096 4.35786 4.43757 4.58986 4.67772 4.71860 4.74547 4.79380 4.82267 4.85495 4.91951 5.04350 5.09571 5.28089 5.30405 5.43423 5.54914 5.72761 6.07118 6.13016 6.49619 6.56622 6.81542 7.23281 7.52645 7.70592 7.99248 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.030053 B = 0.002363 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.470097 B =11845.520494 C =12406.231773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.007 3.993 3 Si 1.121 2.879 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.083 0.917 9 C 0.107 3.893 10 C -0.288 4.288 11 C 0.119 3.881 12 N -0.577 5.577 13 C 0.357 3.643 14 N -0.647 5.647 15 C 0.496 3.504 16 O -0.526 6.526 17 C -0.095 4.095 18 H 0.155 0.845 19 C -0.113 4.113 20 C -0.025 4.025 21 C 0.187 3.813 22 N -0.336 5.336 23 N -0.123 5.123 24 N -0.110 5.110 25 N -0.296 5.296 26 C 0.116 3.884 27 C -0.117 4.117 28 C -0.311 4.311 29 H 0.283 0.717 30 H 0.097 0.903 31 H 0.142 0.858 32 H 0.429 0.571 33 H 0.112 0.888 34 H 0.047 0.953 35 H 0.130 0.870 36 H 0.148 0.852 37 H 0.136 0.864 38 H 0.161 0.839 39 H 0.048 0.952 40 H 0.110 0.890 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.012 -14.978 -8.548 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.210 4.210 3 Si 0.938 3.062 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.191 1.191 7 C -0.574 4.574 8 H 0.101 0.899 9 C 0.098 3.902 10 C -0.312 4.312 11 C -0.033 4.033 12 N -0.298 5.298 13 C 0.129 3.871 14 N -0.296 5.296 15 C 0.283 3.717 16 O -0.398 6.398 17 C -0.116 4.116 18 H 0.173 0.827 19 C -0.152 4.152 20 C -0.065 4.065 21 C -0.092 4.092 22 N -0.185 5.185 23 N -0.116 5.116 24 N -0.097 5.097 25 N -0.100 5.100 26 C -0.002 4.002 27 C -0.156 4.156 28 C -0.336 4.336 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.159 0.841 32 H 0.269 0.731 33 H 0.130 0.870 34 H 0.066 0.934 35 H 0.148 0.852 36 H 0.165 0.835 37 H 0.154 0.846 38 H 0.179 0.821 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.194 -15.254 -6.702 16.805 hybrid contribution 0.122 -0.135 -0.409 0.447 sum 2.316 -15.389 -7.111 17.110 Atomic orbital electron populations 1.70484 1.09062 1.33240 1.30549 1.28452 0.95580 1.07504 0.89487 0.82944 0.75023 0.69547 0.78639 1.18425 1.19548 1.19076 1.20776 1.03181 0.94321 1.39104 0.89863 1.18016 0.89515 0.93562 0.89064 1.21977 1.07811 0.98165 1.03254 1.22135 0.96709 0.87344 0.97144 1.67409 1.19724 1.27054 1.15575 1.18368 0.91955 0.85322 0.91449 1.43495 1.48463 1.02720 1.34883 1.21671 0.80699 0.87172 0.82135 1.90804 1.32196 1.86885 1.29949 1.20843 0.96950 0.88913 1.04922 0.82747 1.21413 0.92338 1.00040 1.01441 1.21023 1.07200 0.83042 0.95200 1.26749 0.81282 1.00436 1.00704 1.74864 1.27666 1.04395 1.11575 1.78834 0.96998 1.18396 1.17416 1.78757 1.13380 1.05670 1.11851 1.48974 1.11568 1.18697 1.30739 1.23236 0.78800 0.93414 1.04787 1.21427 1.03563 0.91995 0.98629 1.21436 1.12046 0.91796 1.08350 0.90532 0.88521 0.84054 0.73109 0.86989 0.93416 0.85229 0.83468 0.84593 0.82102 0.93323 0.87161 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.72 12.54 21.84 0.27 -41.45 16 2 C 0.01 0.35 4.97 85.29 0.42 0.77 16 3 Si 1.12 40.26 30.00 68.60 2.06 42.32 16 4 H -0.26 -8.61 7.11 99.48 0.71 -7.91 16 5 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 6 H -0.27 -9.02 7.11 99.48 0.71 -8.31 16 7 C -0.54 -27.10 9.02 23.52 0.21 -26.89 16 8 H 0.08 3.97 7.96 -2.91 -0.02 3.95 16 9 C 0.11 5.36 5.19 -21.12 -0.11 5.25 16 10 C -0.29 -14.50 8.11 22.84 0.19 -14.31 16 11 C 0.12 5.65 11.15 84.50 0.94 6.59 16 12 N -0.58 -27.22 7.85 -193.53 -1.52 -28.74 16 13 C 0.36 14.78 7.42 132.75 0.98 15.76 16 14 N -0.65 -18.09 5.05 -308.65 -1.56 -19.64 16 15 C 0.50 13.11 7.08 87.66 0.62 13.73 16 16 O -0.53 -19.96 13.79 -3.02 -0.04 -20.00 16 17 C -0.10 -1.15 1.97 -12.88 -0.03 -1.17 16 18 H 0.16 0.37 7.68 -2.38 -0.02 0.35 16 19 C -0.11 -1.18 4.89 30.17 0.15 -1.03 16 20 C -0.02 -0.15 6.00 30.43 0.18 0.03 16 21 C 0.19 3.14 7.11 139.13 0.99 4.12 16 22 N -0.34 -8.57 12.37 -50.67 -0.63 -9.20 16 23 N -0.12 -3.57 13.45 36.91 0.50 -3.07 16 24 N -0.11 -2.71 13.36 37.02 0.49 -2.21 16 25 N -0.30 -4.90 3.36 -335.41 -1.13 -6.03 16 26 C 0.12 0.83 6.72 86.29 0.58 1.41 16 27 C -0.12 -1.57 4.47 30.03 0.13 -1.44 16 28 C -0.31 -13.60 9.73 22.98 0.22 -13.37 16 29 H 0.28 15.27 6.88 -92.71 -0.64 14.63 16 30 H 0.10 5.03 6.99 -2.91 -0.02 5.01 16 31 H 0.14 6.03 8.06 -2.91 -0.02 6.01 16 32 H 0.43 7.69 7.64 -92.71 -0.71 6.98 16 33 H 0.11 0.84 6.69 -2.39 -0.02 0.82 16 34 H 0.05 0.83 7.92 -2.39 -0.02 0.81 16 35 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.15 -0.35 7.89 -2.39 -0.02 -0.37 16 37 H 0.14 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.16 -0.31 7.87 -2.38 -0.02 -0.33 16 39 H 0.05 1.00 8.08 -2.39 -0.02 0.98 16 40 H 0.11 1.67 7.41 -2.39 -0.02 1.65 16 41 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -81.61 342.32 4.46 -77.15 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.52 Total: 21.43 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 5.49 Total: -10.55 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -3.57 Total: -110.34 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.04 Total: -20.00 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.06 Total: 42.32 kcal Total: -81.61 4.46 -77.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570049285.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.507 kcal (2) G-P(sol) polarization free energy of solvation -81.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds