Wall clock time and date at job start Tue Mar 31 2020 05:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00410 * 2 1 4 4 H 1.48495 * 109.47153 * 240.00652 * 3 2 1 5 5 H 1.48508 * 109.46475 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47262 * 119.99920 * 3 2 1 7 7 C 1.38812 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00425 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99835 * 359.97438 * 7 2 1 10 10 C 1.47017 * 125.64968 * 359.97438 * 9 7 2 11 11 C 1.54326 * 107.27325 * 178.98490 * 10 9 7 12 12 C 1.55160 * 102.94096 * 337.80557 * 11 10 9 13 13 H 1.08999 * 111.00576 * 153.61705 * 12 11 10 14 14 N 1.46496 * 111.00051 * 277.42732 * 12 11 10 15 15 C 1.34781 * 119.99900 * 204.99677 * 14 12 11 16 16 O 1.21581 * 119.99775 * 0.02562 * 15 14 12 17 17 C 1.47678 * 120.00175 * 180.02562 * 15 14 12 18 18 C 1.40217 * 120.49581 * 180.02562 * 17 15 14 19 19 C 1.38043 * 118.35145 * 179.97438 * 18 17 15 20 20 C 1.39138 * 119.25781 * 0.02562 * 19 18 17 21 21 N 1.39547 * 119.52950 * 180.02562 * 20 19 18 22 22 C 1.34878 * 126.85067 * 180.02562 * 21 20 19 23 23 N 1.30783 * 108.00818 * 180.02562 * 22 21 20 24 24 C 1.33319 * 109.84877 * 359.97438 * 23 22 21 25 25 N 1.30695 * 109.03051 * 359.71739 * 24 23 22 26 26 N 1.32435 * 120.94359 * 359.74461 * 20 19 18 27 27 C 1.31629 * 121.80123 * 0.52448 * 26 20 19 28 28 C 1.47423 * 125.64620 * 180.02562 * 9 7 2 29 29 H 0.97000 * 119.99690 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.88568 * 59.56396 * 10 9 7 31 31 H 1.09000 * 109.87978 * 298.40151 * 10 9 7 32 32 H 1.09001 * 110.71780 * 219.44212 * 11 10 9 33 33 H 1.08997 * 110.72342 * 96.16694 * 11 10 9 34 34 H 0.96996 * 120.00591 * 25.00379 * 14 12 11 35 35 H 1.07998 * 120.82248 * 359.95650 * 18 17 15 36 36 H 1.07999 * 120.36701 * 180.02562 * 19 18 17 37 37 H 1.08004 * 125.99617 * 359.97438 * 22 21 20 38 38 H 1.08011 * 125.48179 * 180.02562 * 24 23 22 39 39 H 1.08002 * 119.68478 * 179.75962 * 27 26 20 40 40 H 1.08998 * 110.36827 * 85.25033 * 28 9 7 41 41 H 1.08997 * 110.37404 * 322.92329 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1375 -2.5327 0.0005 11 6 -0.4486 -4.0441 -0.0260 12 6 0.8514 -4.6561 -0.6117 13 1 0.9831 -5.6856 -0.2786 14 7 0.8569 -4.5757 -2.0744 15 6 1.5883 -5.4492 -2.7946 16 8 2.2430 -6.3042 -2.2303 17 6 1.5943 -5.3678 -4.2691 18 6 2.3510 -6.2716 -5.0286 19 6 2.3240 -6.1556 -6.4039 20 6 1.5539 -5.1540 -6.9868 21 7 1.5221 -5.0319 -8.3766 22 6 0.8315 -4.1215 -9.0930 23 7 1.0658 -4.3422 -10.3606 24 6 1.8956 -5.3771 -10.4940 25 7 2.2078 -5.8287 -9.3080 26 7 0.8464 -4.3184 -6.2419 27 6 0.8474 -4.3900 -4.9275 28 6 1.9334 -3.7311 -0.0005 29 1 -0.4850 0.8401 0.0004 30 1 -0.5583 -2.0521 -0.8826 31 1 -0.5537 -2.0844 0.9027 32 1 -1.2991 -4.2514 -0.6754 33 1 -0.6310 -4.4181 0.9814 34 1 0.3343 -3.8938 -2.5247 35 1 2.9405 -7.0392 -4.5494 36 1 2.8942 -6.8346 -7.0204 37 1 0.1957 -3.3467 -8.6905 38 1 2.2561 -5.7748 -11.4313 39 1 0.2606 -3.6883 -4.3532 40 1 2.1669 -4.0418 1.0178 41 1 2.8325 -3.7407 -0.6166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015458854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:54 Heat of formation + Delta-G solvation = 138.604080 kcal Electronic energy + Delta-G solvation = -26733.010559 eV Core-core repulsion = 22844.512998 eV Total energy + Delta-G solvation = -3888.497561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.74752 -40.86710 -39.32086 -37.31391 -34.70055 -33.94416 -33.05943 -32.06281 -31.66401 -30.46390 -29.19300 -27.37874 -25.46554 -24.51483 -24.41369 -22.65956 -21.93601 -21.10150 -20.18098 -19.95591 -19.10113 -17.96616 -17.10176 -16.81830 -16.43390 -15.93659 -15.65859 -15.07640 -15.00600 -14.68716 -14.56598 -14.35564 -14.11177 -13.80311 -13.69498 -13.39158 -13.03426 -12.64593 -12.53959 -12.01139 -11.88473 -11.33348 -11.02628 -10.94700 -10.82696 -10.61305 -10.52854 -10.39940 -10.31865 -10.30026 -10.21412 -10.04247 -9.77972 -9.74131 -9.11304 -8.85234 -8.60831 -6.89459 -5.78211 -3.11125 -0.10446 0.74084 1.33574 1.50485 2.47149 2.76997 3.18588 3.36846 3.41922 3.42376 3.53575 3.69766 3.92467 4.01029 4.36330 4.45025 4.46685 4.62960 4.76010 4.81293 5.17212 5.22000 5.35031 5.41323 5.43638 5.59926 5.68014 5.73588 5.74537 5.86419 5.95650 6.09258 6.26805 6.38485 6.40177 6.43795 6.60215 6.88484 7.10913 7.45538 7.48230 7.60096 7.63589 7.73358 8.18087 8.24940 9.15786 9.75480 10.40502 11.33542 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.002905 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.657550 B = 9636.744172 C =11005.371557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.174 3.826 11 C -0.154 4.154 12 C 0.127 3.873 13 H 0.094 0.906 14 N -0.694 5.694 15 C 0.563 3.437 16 O -0.540 6.540 17 C -0.184 4.184 18 C 0.005 3.995 19 C -0.164 4.164 20 C 0.376 3.624 21 N -0.335 5.335 22 C 0.296 3.704 23 N -0.540 5.540 24 C 0.215 3.785 25 N -0.310 5.310 26 N -0.502 5.502 27 C 0.174 3.826 28 C 0.125 3.875 29 H 0.253 0.747 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.402 0.598 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.230 0.770 38 H 0.227 0.773 39 H 0.177 0.823 40 H 0.030 0.970 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.517 -12.571 -14.541 19.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.050 3.950 11 C -0.193 4.193 12 C 0.022 3.978 13 H 0.112 0.888 14 N -0.344 5.344 15 C 0.348 3.652 16 O -0.419 6.419 17 C -0.190 4.190 18 C -0.022 4.022 19 C -0.186 4.186 20 C 0.148 3.852 21 N -0.120 5.120 22 C 0.000 4.000 23 N -0.266 5.266 24 C -0.088 4.088 25 N -0.135 5.135 26 N -0.214 5.214 27 C 0.015 3.985 28 C -0.002 4.002 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.238 0.762 35 H 0.177 0.823 36 H 0.173 0.827 37 H 0.247 0.753 38 H 0.243 0.757 39 H 0.194 0.806 40 H 0.047 0.953 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.266 -12.713 -14.680 19.422 hybrid contribution 0.571 0.934 0.308 1.138 sum 0.305 -11.779 -14.372 18.584 Atomic orbital electron populations 1.69926 1.04805 1.25188 1.57158 1.24766 0.95724 0.97584 1.02234 0.86214 0.78486 0.83222 0.77928 1.21217 1.21575 1.21200 1.18997 0.90398 0.82354 1.43787 0.90609 1.44474 1.01443 0.99851 1.87318 1.21192 0.84575 0.87882 1.01380 1.23247 0.95555 1.00067 1.00427 1.22228 0.97745 0.99763 0.78074 0.88841 1.45774 1.47777 1.33111 1.07740 1.17780 0.79934 0.81806 0.85657 1.90777 1.42690 1.36495 1.71893 1.21162 1.02562 0.99754 0.95502 1.21683 0.92897 0.95721 0.91890 1.21621 1.01748 0.99765 0.95493 1.17851 0.93979 0.92738 0.80630 1.47493 1.35252 1.24859 1.04391 1.26542 0.93691 0.93269 0.86456 1.70751 1.20023 1.18782 1.17051 1.26317 0.93741 0.91795 0.96936 1.78172 1.19277 1.17395 0.98650 1.66840 1.21356 1.25475 1.07777 1.22848 0.93610 0.94396 0.87690 1.21948 0.94697 0.86365 0.97225 0.93689 0.93544 0.93659 0.91474 0.90739 0.76201 0.82250 0.82720 0.75345 0.75677 0.80619 0.95258 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.72 10.31 55.49 0.57 -25.14 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.07 10.28 -15.06 -0.15 -6.23 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -14.38 3.39 -170.08 -0.58 -14.96 16 10 C 0.17 3.81 5.36 -3.07 -0.02 3.79 16 11 C -0.15 -2.50 6.55 -24.89 -0.16 -2.66 16 12 C 0.13 2.07 3.43 -65.78 -0.23 1.84 16 13 H 0.09 1.47 7.54 -51.93 -0.39 1.07 16 14 N -0.69 -10.15 5.14 -52.72 -0.27 -10.42 16 15 C 0.56 8.19 7.77 -12.40 -0.10 8.10 16 16 O -0.54 -9.35 16.05 5.29 0.09 -9.26 16 17 C -0.18 -2.20 5.89 -104.81 -0.62 -2.81 16 18 C 0.00 0.05 9.70 -38.91 -0.38 -0.33 16 19 C -0.16 -1.68 9.70 -39.32 -0.38 -2.06 16 20 C 0.38 4.25 7.56 -154.45 -1.17 3.09 16 21 N -0.33 -3.71 3.80 -13.32 -0.05 -3.76 16 22 C 0.30 2.95 12.25 -90.29 -1.11 1.84 16 23 N -0.54 -5.63 11.19 -15.72 -0.18 -5.81 16 24 C 0.21 1.92 13.03 -91.76 -1.20 0.73 16 25 N -0.31 -3.32 11.99 29.30 0.35 -2.97 16 26 N -0.50 -5.70 9.86 -11.98 -0.12 -5.82 16 27 C 0.17 1.92 10.71 -17.15 -0.18 1.73 16 28 C 0.12 2.49 6.93 -2.53 -0.02 2.48 16 29 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.05 1.10 7.38 -51.93 -0.38 0.71 16 31 H 0.05 1.13 7.51 -51.93 -0.39 0.74 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.40 5.40 6.72 -40.82 -0.27 5.13 16 35 H 0.16 1.53 7.73 -52.49 -0.41 1.12 16 36 H 0.16 1.39 7.71 -52.49 -0.40 0.99 16 37 H 0.23 1.67 8.06 -52.48 -0.42 1.25 16 38 H 0.23 1.04 8.06 -52.48 -0.42 0.61 16 39 H 0.18 1.66 6.41 -52.49 -0.34 1.32 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 353.08 15.07 5.32 5.32 Total: -1.00 -32.87 353.08 -10.35 -43.22 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -4.67 Total: 3.85 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: -5.80 Total: 9.23 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: -0.27 Total: -68.89 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.87 -10.35 -43.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015458854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.826 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds