Wall clock time and date at job start Tue Mar 31 2020 05:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00410 * 2 1 4 4 H 1.48495 * 109.47153 * 240.00652 * 3 2 1 5 5 H 1.48508 * 109.46475 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47262 * 119.99920 * 3 2 1 7 7 C 1.38812 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00425 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99835 * 359.97438 * 7 2 1 10 10 C 1.47017 * 125.64968 * 359.97438 * 9 7 2 11 11 C 1.54326 * 107.27325 * 178.98490 * 10 9 7 12 12 C 1.55160 * 102.94096 * 337.80557 * 11 10 9 13 13 H 1.08999 * 111.00576 * 153.61705 * 12 11 10 14 14 N 1.46496 * 111.00051 * 277.42732 * 12 11 10 15 15 C 1.34781 * 119.99900 * 204.99677 * 14 12 11 16 16 O 1.21581 * 119.99775 * 0.02562 * 15 14 12 17 17 C 1.47678 * 120.00175 * 180.02562 * 15 14 12 18 18 C 1.40217 * 120.49581 * 180.02562 * 17 15 14 19 19 C 1.38043 * 118.35145 * 179.97438 * 18 17 15 20 20 C 1.39138 * 119.25781 * 0.02562 * 19 18 17 21 21 N 1.39547 * 119.52950 * 180.02562 * 20 19 18 22 22 C 1.34878 * 126.85067 * 180.02562 * 21 20 19 23 23 N 1.30783 * 108.00818 * 180.02562 * 22 21 20 24 24 C 1.33319 * 109.84877 * 359.97438 * 23 22 21 25 25 N 1.30695 * 109.03051 * 359.71739 * 24 23 22 26 26 N 1.32435 * 120.94359 * 359.74461 * 20 19 18 27 27 C 1.31629 * 121.80123 * 0.52448 * 26 20 19 28 28 C 1.47423 * 125.64620 * 180.02562 * 9 7 2 29 29 H 0.97000 * 119.99690 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.88568 * 59.56396 * 10 9 7 31 31 H 1.09000 * 109.87978 * 298.40151 * 10 9 7 32 32 H 1.09001 * 110.71780 * 219.44212 * 11 10 9 33 33 H 1.08997 * 110.72342 * 96.16694 * 11 10 9 34 34 H 0.96996 * 120.00591 * 25.00379 * 14 12 11 35 35 H 1.07998 * 120.82248 * 359.95650 * 18 17 15 36 36 H 1.07999 * 120.36701 * 180.02562 * 19 18 17 37 37 H 1.08004 * 125.99617 * 359.97438 * 22 21 20 38 38 H 1.08011 * 125.48179 * 180.02562 * 24 23 22 39 39 H 1.08002 * 119.68478 * 179.75962 * 27 26 20 40 40 H 1.08998 * 110.36827 * 85.25033 * 28 9 7 41 41 H 1.08997 * 110.37404 * 322.92329 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1375 -2.5327 0.0005 11 6 -0.4486 -4.0441 -0.0260 12 6 0.8514 -4.6561 -0.6117 13 1 0.9831 -5.6856 -0.2786 14 7 0.8569 -4.5757 -2.0744 15 6 1.5883 -5.4492 -2.7946 16 8 2.2430 -6.3042 -2.2303 17 6 1.5943 -5.3678 -4.2691 18 6 2.3510 -6.2716 -5.0286 19 6 2.3240 -6.1556 -6.4039 20 6 1.5539 -5.1540 -6.9868 21 7 1.5221 -5.0319 -8.3766 22 6 0.8315 -4.1215 -9.0930 23 7 1.0658 -4.3422 -10.3606 24 6 1.8956 -5.3771 -10.4940 25 7 2.2078 -5.8287 -9.3080 26 7 0.8464 -4.3184 -6.2419 27 6 0.8474 -4.3900 -4.9275 28 6 1.9334 -3.7311 -0.0005 29 1 -0.4850 0.8401 0.0004 30 1 -0.5583 -2.0521 -0.8826 31 1 -0.5537 -2.0844 0.9027 32 1 -1.2991 -4.2514 -0.6754 33 1 -0.6310 -4.4181 0.9814 34 1 0.3343 -3.8938 -2.5247 35 1 2.9405 -7.0392 -4.5494 36 1 2.8942 -6.8346 -7.0204 37 1 0.1957 -3.3467 -8.6905 38 1 2.2561 -5.7748 -11.4313 39 1 0.2606 -3.6883 -4.3532 40 1 2.1669 -4.0418 1.0178 41 1 2.8325 -3.7407 -0.6166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015458854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:53 Heat of formation + Delta-G solvation = 119.659612 kcal Electronic energy + Delta-G solvation = -26733.832053 eV Core-core repulsion = 22844.512998 eV Total energy + Delta-G solvation = -3889.319055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.50090 -41.81547 -40.48516 -38.80832 -35.62597 -35.38385 -33.93793 -33.69527 -32.43007 -31.57983 -30.76506 -28.91979 -26.68127 -26.01039 -25.32126 -23.56396 -22.68779 -22.26275 -21.85002 -21.30015 -19.91288 -19.19827 -18.59476 -18.03705 -17.22736 -17.07667 -16.64809 -16.49965 -16.15383 -15.99003 -15.68072 -15.41481 -15.21688 -15.02324 -14.95634 -14.39643 -14.06462 -13.99235 -13.79278 -13.54131 -13.40463 -12.88461 -12.78528 -12.29016 -12.14880 -12.10293 -12.04014 -11.78356 -11.57104 -11.41122 -11.35177 -11.24455 -11.08215 -10.83803 -10.69402 -10.18683 -9.85526 -8.83570 -7.83231 -5.16667 -0.96800 -0.08509 0.53560 0.73352 1.47583 1.48648 1.55070 1.69101 1.80496 2.05956 2.50590 2.59453 2.90199 3.21026 3.33946 3.35723 3.45293 3.62312 3.70659 3.72925 3.85787 3.98559 4.06018 4.09913 4.34996 4.41939 4.59801 4.71767 4.76388 4.80065 4.92827 4.94444 5.01154 5.08358 5.09764 5.26615 5.47284 5.52856 5.65843 5.71359 5.80922 6.22766 6.27164 6.47845 6.85341 7.09535 7.14615 7.80171 8.43524 9.26192 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.002905 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.657550 B = 9636.744172 C =11005.371557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.057 4.057 3 Si 0.970 3.030 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.621 5.621 10 C 0.182 3.818 11 C -0.134 4.134 12 C 0.142 3.858 13 H 0.109 0.891 14 N -0.693 5.693 15 C 0.568 3.432 16 O -0.569 6.569 17 C -0.195 4.195 18 C 0.011 3.989 19 C -0.160 4.160 20 C 0.371 3.629 21 N -0.346 5.346 22 C 0.294 3.706 23 N -0.558 5.558 24 C 0.220 3.780 25 N -0.331 5.331 26 N -0.509 5.509 27 C 0.179 3.821 28 C 0.121 3.879 29 H 0.247 0.753 30 H 0.024 0.976 31 H 0.008 0.992 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.408 0.592 35 H 0.169 0.831 36 H 0.167 0.833 37 H 0.249 0.751 38 H 0.264 0.736 39 H 0.189 0.811 40 H 0.033 0.967 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.455 -13.495 -15.799 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.250 4.250 3 Si 0.799 3.201 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.369 4.369 8 H 0.090 0.910 9 N -0.347 5.347 10 C 0.057 3.943 11 C -0.173 4.173 12 C 0.036 3.964 13 H 0.127 0.873 14 N -0.343 5.343 15 C 0.355 3.645 16 O -0.449 6.449 17 C -0.201 4.201 18 C -0.015 4.015 19 C -0.183 4.183 20 C 0.143 3.857 21 N -0.131 5.131 22 C -0.001 4.001 23 N -0.283 5.283 24 C -0.082 4.082 25 N -0.156 5.156 26 N -0.221 5.221 27 C 0.019 3.981 28 C -0.005 4.005 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.026 0.974 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.245 0.755 35 H 0.187 0.813 36 H 0.185 0.815 37 H 0.264 0.736 38 H 0.279 0.721 39 H 0.206 0.794 40 H 0.050 0.950 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.197 -13.659 -15.960 21.008 hybrid contribution 0.596 1.204 0.623 1.481 sum 0.399 -12.455 -15.337 19.761 Atomic orbital electron populations 1.70117 1.05795 1.25247 1.58100 1.25459 0.96558 1.00319 1.02687 0.85288 0.77276 0.79621 0.77930 1.20646 1.21882 1.20931 1.19276 0.90644 0.83864 1.43143 0.90984 1.44697 1.02501 1.00474 1.87072 1.20991 0.83331 0.91527 0.98473 1.23100 0.96464 0.95454 1.02246 1.22023 0.96013 0.99438 0.78936 0.87293 1.45733 1.48012 1.33439 1.07125 1.18044 0.78928 0.80967 0.86558 1.90760 1.43827 1.37632 1.72701 1.20963 1.04139 1.01079 0.93957 1.21800 0.92319 0.95411 0.91975 1.21712 1.01559 0.99673 0.95324 1.18079 0.93821 0.92780 0.80972 1.47580 1.35805 1.25385 1.04350 1.27010 0.93379 0.93242 0.86489 1.70803 1.20730 1.19533 1.17270 1.27109 0.92496 0.90830 0.97756 1.78156 1.20160 1.18158 0.99162 1.66884 1.21742 1.25752 1.07767 1.23015 0.93218 0.94148 0.87719 1.22083 0.95383 0.85575 0.97506 0.94344 0.95799 0.97401 0.88506 0.89096 0.75492 0.81326 0.81529 0.73562 0.72093 0.79429 0.94962 0.95176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.55 10.31 21.65 0.22 -53.33 16 2 C -0.06 -3.09 5.49 84.86 0.47 -2.63 16 3 Si 0.97 44.64 29.55 68.60 2.03 46.66 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.24 -12.99 10.28 84.03 0.86 -12.13 16 8 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 9 N -0.62 -29.77 3.39 -692.00 -2.35 -32.12 16 10 C 0.18 7.97 5.36 86.73 0.47 8.43 16 11 C -0.13 -4.09 6.55 31.78 0.21 -3.88 16 12 C 0.14 4.37 3.43 46.39 0.16 4.53 16 13 H 0.11 3.14 7.54 -2.39 -0.02 3.12 16 14 N -0.69 -19.28 5.14 -438.96 -2.26 -21.54 16 15 C 0.57 15.81 7.77 86.74 0.67 16.49 16 16 O -0.57 -19.00 16.05 -3.97 -0.06 -19.07 16 17 C -0.20 -4.42 5.89 -19.98 -0.12 -4.54 16 18 C 0.01 0.23 9.70 22.70 0.22 0.45 16 19 C -0.16 -3.05 9.70 22.44 0.22 -2.83 16 20 C 0.37 7.91 7.56 132.87 1.00 8.92 16 21 N -0.35 -7.21 3.80 -196.07 -0.75 -7.96 16 22 C 0.29 5.47 12.25 180.23 2.21 7.67 16 23 N -0.56 -10.74 11.19 -203.64 -2.28 -13.02 16 24 C 0.22 3.51 13.03 180.75 2.35 5.86 16 25 N -0.33 -6.59 11.99 -61.20 -0.73 -7.32 16 26 N -0.51 -10.90 9.86 -191.82 -1.89 -12.79 16 27 C 0.18 3.71 10.71 85.04 0.91 4.62 16 28 C 0.12 4.78 6.93 86.86 0.60 5.38 16 29 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 30 H 0.02 1.14 7.38 -2.39 -0.02 1.12 16 31 H 0.01 0.39 7.51 -2.39 -0.02 0.38 16 32 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.41 10.42 6.72 -92.71 -0.62 9.79 16 35 H 0.17 3.00 7.73 -2.91 -0.02 2.98 16 36 H 0.17 2.73 7.71 -2.91 -0.02 2.71 16 37 H 0.25 3.28 8.06 -2.91 -0.02 3.26 16 38 H 0.26 1.68 8.06 -2.90 -0.02 1.66 16 39 H 0.19 3.30 6.41 -2.91 -0.02 3.29 16 40 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -70.98 353.08 2.63 -68.35 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.46 Total: 15.79 kcal Atomic # 6 Polarization: 26.11 SS G_CDS: 10.23 Total: 36.34 kcal Atomic # 7 Polarization: -138.04 SS G_CDS: -10.03 Total: -148.08 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.06 Total: -19.07 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -70.98 2.63 -68.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015458854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.009 kcal (2) G-P(sol) polarization free energy of solvation -70.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds